Wall clock time and date at job start Sat Apr 11 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93214 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48175 * 12 11 10 14 14 C 1.38274 * 120.13728 * 359.76763 * 13 12 11 15 15 C 1.50705 * 119.96893 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21591 * 120.00251 * 359.97438 * 17 16 15 19 19 C 1.47539 * 119.99699 * 180.02562 * 17 16 15 20 20 C 1.39525 * 120.05183 * 359.72460 * 19 17 16 21 21 C 1.37786 * 120.18575 * 179.84925 * 20 19 17 22 22 C 1.38648 * 119.97146 * 0.39289 * 21 20 19 23 23 C 1.37657 * 120.31843 * 359.65880 * 22 21 20 24 24 C 1.38877 * 120.88042 * 0.32358 * 23 22 21 25 25 O 1.35848 * 111.31766 * 179.29993 * 24 23 22 26 26 C 1.43773 * 109.29573 * 18.84642 * 25 24 23 27 27 C 1.51683 * 132.13138 * 180.56964 * 23 22 21 28 28 C 1.38123 * 120.07195 * 0.02562 * 14 13 12 29 29 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 30 30 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.96718 * 180.23027 * 12 11 10 32 32 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 33 33 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 34 34 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 35 35 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.90799 * 0.09196 * 20 19 17 37 37 H 1.07997 * 120.01477 * 180.10107 * 21 20 19 38 38 H 1.08000 * 119.83677 * 179.67956 * 22 21 20 39 39 H 1.09002 * 110.75265 * 90.66830 * 26 25 24 40 40 H 1.08998 * 110.75185 * 213.84125 * 26 25 24 41 41 H 1.09003 * 110.94413 * 46.13742 * 27 23 22 42 42 H 1.09001 * 110.97661 * 282.44715 * 27 23 22 43 43 H 1.07998 * 120.03894 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8531 -4.7989 -0.1977 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4785 -3.7729 -0.4665 16 7 8.0828 -3.8566 0.8654 17 6 9.4223 -3.9319 0.9940 18 8 10.1291 -3.9310 0.0046 19 6 10.0310 -4.0167 2.3353 20 6 9.2212 -4.0132 3.4715 21 6 9.7865 -4.0954 4.7254 22 6 11.1641 -4.1737 4.8603 23 6 11.9724 -4.1769 3.7460 24 6 11.4286 -4.0955 2.4707 25 8 12.3982 -4.0989 1.5192 26 6 13.6144 -4.6196 2.0821 27 6 13.4778 -4.2625 3.5812 28 6 5.3550 -2.4724 -0.2262 29 1 -0.4849 0.8401 -0.0004 30 1 2.1493 -3.5267 0.0145 31 1 3.2704 -5.7082 -0.1864 32 1 5.7198 -5.8205 -0.4034 33 1 7.7495 -4.6564 -1.0447 34 1 7.8422 -2.8802 -0.9752 35 1 7.5190 -3.8577 1.6547 36 1 8.1481 -3.9497 3.3678 37 1 9.1570 -4.0940 5.6029 38 1 11.6052 -4.2328 5.8444 39 1 13.6715 -5.6996 1.9460 40 1 14.4837 -4.1301 1.6432 41 1 13.8944 -5.0503 4.2090 42 1 13.9493 -3.3039 3.7980 43 1 5.9409 -1.5652 -0.2380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361432315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:05 Heat of formation + Delta-G solvation = -56.717589 kcal Electronic energy + Delta-G solvation = -27462.727008 eV Core-core repulsion = 23438.373931 eV Total energy + Delta-G solvation = -4024.353076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.25520 -41.08310 -40.44244 -38.61079 -38.24739 -35.82742 -34.45959 -33.82323 -32.35311 -31.29695 -30.93031 -30.14323 -27.56462 -26.94638 -24.95316 -23.76559 -23.30959 -22.97895 -22.27656 -21.38804 -19.75715 -19.25632 -18.48278 -18.19552 -17.66819 -17.16187 -16.90873 -16.78079 -16.57598 -16.14567 -15.90750 -15.72939 -15.64928 -15.22776 -14.92162 -14.49768 -14.47998 -14.22529 -14.09989 -13.95361 -13.85081 -13.62759 -13.28826 -13.11511 -12.82852 -12.70321 -12.60162 -12.48313 -12.39683 -12.21350 -11.95277 -11.82080 -11.33488 -11.06391 -10.91443 -10.27043 -9.90632 -9.81056 -9.19378 -9.13900 -8.50591 -6.23156 -0.20055 0.28059 0.32678 0.63145 1.31303 1.34582 1.50995 1.80946 2.16639 2.26980 2.28602 2.75993 2.78115 2.96856 3.14534 3.42674 3.56243 3.69964 3.78390 3.95603 4.04455 4.13370 4.19220 4.24834 4.30351 4.38526 4.43525 4.48027 4.55633 4.64227 4.70146 4.80936 4.86046 4.90731 4.96298 5.13821 5.16805 5.29723 5.29996 5.36700 5.38741 5.61549 5.62055 5.67317 5.74119 5.87983 6.11989 6.17676 6.47822 6.83977 7.15228 7.57753 8.60722 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.002244 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.610256 B =12472.621543 C =12986.373330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.085 0.915 9 O -0.245 6.245 10 C 0.121 3.879 11 C -0.226 4.226 12 C -0.072 4.072 13 C -0.158 4.158 14 C -0.061 4.061 15 C 0.174 3.826 16 N -0.710 5.710 17 C 0.554 3.446 18 O -0.574 6.574 19 C -0.187 4.187 20 C -0.056 4.056 21 C -0.151 4.151 22 C -0.038 4.038 23 C -0.194 4.194 24 C 0.138 3.862 25 O -0.316 6.316 26 C 0.034 3.966 27 C -0.100 4.100 28 C -0.170 4.170 29 H 0.284 0.716 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.411 0.589 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.083 -12.116 12.050 31.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.102 0.898 9 O -0.152 6.152 10 C 0.072 3.928 11 C -0.245 4.245 12 C -0.090 4.090 13 C -0.177 4.177 14 C -0.061 4.061 15 C 0.051 3.949 16 N -0.362 5.362 17 C 0.343 3.657 18 O -0.455 6.455 19 C -0.190 4.190 20 C -0.074 4.074 21 C -0.169 4.169 22 C -0.056 4.056 23 C -0.195 4.195 24 C 0.090 3.910 25 O -0.230 6.230 26 C -0.040 4.040 27 C -0.137 4.137 28 C -0.190 4.190 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 26.480 -11.707 11.100 31.008 hybrid contribution -0.846 0.791 -0.068 1.160 sum 25.635 -10.916 11.032 29.967 Atomic orbital electron populations 1.69722 1.06801 1.29553 1.50089 1.25233 0.95845 1.02009 0.95632 0.85266 0.78851 0.77753 0.79161 1.19382 1.19194 1.18762 1.20709 0.77985 0.96164 1.52532 0.89764 1.83524 1.21324 1.27369 1.83031 1.19543 0.92805 0.85291 0.95186 1.21411 1.00489 0.93170 1.09431 1.21144 0.95041 0.96504 0.96275 1.21026 0.93243 0.98090 1.05363 1.19415 0.94260 0.92179 1.00292 1.20056 0.87375 1.02927 0.84508 1.45893 1.06086 1.74505 1.09759 1.18500 0.82131 0.75879 0.89175 1.90784 1.62313 1.51816 1.40607 1.19334 0.90524 1.15477 0.93710 1.21372 1.00109 0.94761 0.91165 1.21411 0.95229 1.02642 0.97635 1.20953 0.92890 0.93262 0.98509 1.21225 0.97351 1.08407 0.92492 1.19852 0.89164 0.93220 0.88775 1.86956 1.20524 1.78656 1.36822 1.24269 0.85753 1.00683 0.93306 1.21880 0.90294 1.05261 0.96220 1.20254 0.90708 0.98737 1.09296 0.90586 0.86999 0.83637 0.83405 0.89648 0.91489 0.75136 0.83212 0.81666 0.81813 0.89575 0.85600 0.86076 0.87840 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.96 21.61 0.30 -54.04 16 2 C 0.01 0.66 5.49 84.83 0.47 1.12 16 3 Si 0.97 45.22 28.62 68.60 1.96 47.18 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.40 -22.94 9.95 67.92 0.68 -22.27 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 9 O -0.24 -13.02 8.59 -22.74 -0.20 -13.21 16 10 C 0.12 5.43 6.65 22.58 0.15 5.58 16 11 C -0.23 -9.32 9.17 22.39 0.21 -9.11 16 12 C -0.07 -2.25 10.04 22.25 0.22 -2.02 16 13 C -0.16 -4.35 9.70 22.30 0.22 -4.13 16 14 C -0.06 -1.82 5.25 -19.88 -0.10 -1.92 16 15 C 0.17 4.71 5.80 85.64 0.50 5.21 16 16 N -0.71 -17.95 5.50 -469.99 -2.58 -20.54 16 17 C 0.55 16.50 7.76 86.70 0.67 17.17 16 18 O -0.57 -21.74 15.87 10.91 0.17 -21.57 16 19 C -0.19 -4.62 5.89 -19.93 -0.12 -4.74 16 20 C -0.06 -0.96 9.51 22.47 0.21 -0.75 16 21 C -0.15 -1.88 10.05 22.26 0.22 -1.66 16 22 C -0.04 -0.45 10.02 22.23 0.22 -0.22 16 23 C -0.19 -3.14 6.27 -19.53 -0.12 -3.26 16 24 C 0.14 3.36 6.73 23.01 0.15 3.51 16 25 O -0.32 -8.38 10.12 -76.93 -0.78 -9.16 16 26 C 0.03 0.47 8.01 72.56 0.58 1.06 16 27 C -0.10 -0.99 7.12 30.74 0.22 -0.77 16 28 C -0.17 -6.33 9.65 22.39 0.22 -6.11 16 29 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 31 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.09 2.19 8.09 -2.38 -0.02 2.17 16 34 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.41 8.62 6.47 -92.71 -0.60 8.02 16 36 H 0.15 2.03 6.37 -2.91 -0.02 2.01 16 37 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -77.53 368.28 3.94 -73.59 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.47 Total: 21.07 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.59 Total: -23.33 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -2.28 Total: -74.58 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.80 Total: -43.94 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.96 Total: 47.18 kcal Total: -77.53 3.94 -73.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361432315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.872 kcal (2) G-P(sol) polarization free energy of solvation -77.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds