Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48493 * 109.47313 * 270.00478 * 3 2 1 5 5 H 1.48507 * 109.46921 * 30.00724 * 3 2 1 6 6 H 1.48504 * 109.47237 * 149.99962 * 3 2 1 7 7 C 1.38691 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99967 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.35519 * 116.99754 * 185.06568 * 9 7 2 11 11 C 1.38829 * 120.16721 * 354.37583 * 10 9 7 12 12 C 1.38026 * 120.07789 * 179.97438 * 11 10 9 13 13 C 1.38574 * 120.39654 * 359.97438 * 12 11 10 14 14 C 1.37825 * 120.32696 * 359.74057 * 13 12 11 15 15 C 1.39673 * 119.91482 * 0.53568 * 14 13 12 16 16 C 1.47541 * 120.19384 * 179.74944 * 15 14 13 17 17 O 1.21586 * 119.99966 * 179.72297 * 16 15 14 18 18 N 1.34776 * 120.00190 * 359.71413 * 16 15 14 19 19 C 1.46499 * 120.00214 * 185.38239 * 18 16 15 20 20 C 1.50703 * 113.56550 * 281.23762 * 19 18 16 21 21 C 1.38227 * 120.00050 * 169.56263 * 20 19 18 22 22 C 1.38240 * 120.00092 * 179.78645 * 21 20 19 23 23 C 1.38233 * 119.99739 * 0.46369 * 22 21 20 24 24 C 1.38235 * 119.99926 * 359.76586 * 23 22 21 25 25 C 1.38228 * 120.00230 * 0.02562 * 24 23 22 26 26 C 1.53356 * 114.56411 * 55.51135 * 19 18 16 27 27 O 1.43345 * 88.45061 * 86.60769 * 26 19 18 28 28 C 1.43349 * 88.31848 * 28.14999 * 27 26 19 29 29 H 0.97003 * 120.00203 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.96328 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.80405 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.83562 * 179.97438 * 13 12 11 33 33 H 1.08000 * 120.04366 * 180.25607 * 14 13 12 34 34 H 0.97004 * 119.99407 * 5.38873 * 18 16 15 35 35 H 1.08003 * 120.00079 * 359.97438 * 21 20 19 36 36 H 1.08002 * 119.99719 * 180.25234 * 22 21 20 37 37 H 1.07997 * 120.00118 * 179.79187 * 23 22 21 38 38 H 1.08004 * 119.99397 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00171 * 179.97438 * 25 24 23 40 40 H 1.09001 * 113.39789 * 331.70717 * 26 19 18 41 41 H 1.09009 * 113.43480 * 201.51542 * 26 19 18 42 42 H 1.09007 * 113.39575 * 86.74781 * 28 27 26 43 43 H 1.09004 * 113.39347 * 216.95081 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0086 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0010 9 8 1.3346 -2.3687 -0.0005 10 6 2.0687 -3.5028 0.1055 11 6 3.4555 -3.4402 0.0906 12 6 4.2014 -4.5965 0.1993 13 6 3.5746 -5.8260 0.3244 14 6 2.1989 -5.9068 0.3470 15 6 1.4310 -4.7458 0.2321 16 6 -0.0421 -4.8257 0.2500 17 8 -0.7071 -3.8122 0.1548 18 7 -0.6507 -6.0220 0.3717 19 6 -2.1093 -6.1155 0.2712 20 6 -2.8278 -5.6989 1.5288 21 6 -4.1993 -5.5275 1.5166 22 6 -4.8589 -5.1496 2.6712 23 6 -4.1457 -4.9339 3.8355 24 6 -2.7735 -5.1007 3.8465 25 6 -2.1145 -5.4827 2.6930 26 6 -2.6977 -5.5362 -1.0210 27 8 -2.4796 -6.8083 -1.6446 28 6 -2.6231 -7.4177 -0.3551 29 1 -0.4850 0.8400 0.0004 30 1 3.9513 -2.4856 -0.0062 31 1 5.2799 -4.5427 0.1868 32 1 4.1671 -6.7251 0.4085 33 1 1.7152 -6.8670 0.4489 34 1 -0.1229 -6.8211 0.5259 35 1 -4.7560 -5.6917 0.6058 36 1 -5.9311 -5.0196 2.6627 37 1 -4.6606 -4.6354 4.7367 38 1 -2.2163 -4.9317 4.7561 39 1 -1.0423 -5.6127 2.7015 40 1 -2.0956 -4.7351 -1.4498 41 1 -3.7516 -5.2706 -0.9365 42 1 -3.6574 -7.6439 -0.0959 43 1 -1.9554 -8.2653 -0.2002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361658255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -20.917507 kcal Electronic energy + Delta-G solvation = -29422.454625 eV Core-core repulsion = 25399.653957 eV Total energy + Delta-G solvation = -4022.800668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70497 -41.04681 -39.63826 -39.41023 -38.02116 -35.32696 -34.32634 -33.01059 -31.92694 -31.44812 -30.57754 -28.94491 -27.42972 -27.36840 -25.02301 -23.89091 -23.27627 -23.08087 -21.79684 -20.60372 -19.81426 -19.33518 -18.63963 -17.95872 -17.51574 -16.78334 -16.63755 -16.55902 -16.32197 -16.01592 -15.82282 -15.79600 -15.56158 -15.34816 -15.08166 -14.86866 -14.31395 -14.28244 -14.17067 -13.76918 -13.55744 -13.45583 -13.05988 -12.97136 -12.70211 -12.54330 -12.37815 -12.18816 -12.13129 -11.99018 -11.91757 -11.45477 -11.15630 -10.83963 -10.54061 -10.14106 -9.83632 -9.82141 -9.61196 -9.04861 -8.45052 -6.15776 0.10903 0.35909 0.48476 0.71691 1.31165 1.42396 1.49824 1.99013 2.08244 2.14785 2.66876 2.81302 2.88864 3.20557 3.27612 3.45299 3.60748 3.89694 4.00981 4.04239 4.07018 4.12507 4.25047 4.26332 4.27925 4.40490 4.50983 4.55881 4.58761 4.65123 4.70965 4.82186 4.90442 4.96288 5.04134 5.06451 5.11085 5.12214 5.38605 5.46555 5.53434 5.59090 5.59675 5.68422 5.72268 5.94938 6.08533 6.15391 6.61497 6.94255 7.45528 7.79250 8.74875 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.004219 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.346287 B = 6634.619651 C = 7986.530650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.020 4.020 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.427 4.427 8 H 0.105 0.895 9 O -0.186 6.186 10 C 0.151 3.849 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.201 4.201 14 C -0.031 4.031 15 C -0.245 4.245 16 C 0.556 3.444 17 O -0.548 6.548 18 N -0.696 5.696 19 C 0.144 3.856 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.117 4.117 26 C 0.029 3.971 27 O -0.379 6.379 28 C 0.052 3.948 29 H 0.270 0.730 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.415 0.585 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -17.261 5.413 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.503 4.503 8 H 0.122 0.878 9 O -0.088 6.088 10 C 0.095 3.905 11 C -0.278 4.278 12 C -0.058 4.058 13 C -0.219 4.219 14 C -0.049 4.049 15 C -0.250 4.250 16 C 0.346 3.654 17 O -0.425 6.425 18 N -0.352 5.352 19 C 0.056 3.944 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.135 4.135 26 C -0.048 4.048 27 O -0.298 6.298 28 C -0.024 4.024 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.171 0.829 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.254 0.746 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.974 -16.435 5.015 17.637 hybrid contribution 0.667 1.178 0.044 1.354 sum -3.307 -15.257 5.059 16.411 Atomic orbital electron populations 1.70319 1.08255 1.28464 1.46726 1.26704 0.96721 1.02974 0.95555 0.84597 0.77920 0.74374 0.79306 1.18722 1.19743 1.17167 1.21999 0.92614 0.81833 1.53852 0.87758 1.84173 1.35037 1.12077 1.77546 1.20050 0.91602 0.87560 0.91243 1.21300 0.92400 1.00925 1.13141 1.21431 1.00702 0.91293 0.92392 1.21164 0.93947 0.98419 1.08383 1.21306 0.94507 0.95600 0.93506 1.19275 0.92328 0.92891 1.20525 1.18414 0.88032 0.83046 0.75887 1.90940 1.66721 1.35949 1.48844 1.45118 1.05080 1.09425 1.75570 1.21242 0.81524 0.99121 0.92486 1.19870 0.94462 1.01088 0.93923 1.21212 0.92897 1.00156 0.99663 1.21463 1.01317 0.98765 0.92266 1.21495 0.93835 0.99377 0.99557 1.21391 0.95743 0.99802 0.98300 1.21032 0.99544 0.99512 0.93414 1.24109 1.01709 0.88127 0.90891 1.89875 1.92633 1.19790 1.27538 1.24235 1.03743 0.94581 0.79888 0.92121 0.85973 0.82916 0.81901 0.82388 0.74618 0.83987 0.82975 0.83631 0.85235 0.87691 0.92413 0.87119 0.85910 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.96 13.67 21.62 0.30 -58.66 16 2 C -0.02 -1.19 5.49 84.85 0.47 -0.73 16 3 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 7 C -0.43 -25.88 9.49 67.93 0.64 -25.24 16 8 H 0.11 5.70 5.21 -2.91 -0.02 5.68 16 9 O -0.19 -11.80 7.84 0.82 0.01 -11.79 16 10 C 0.15 7.77 6.66 22.91 0.15 7.93 16 11 C -0.26 -11.11 9.16 22.36 0.20 -10.90 16 12 C -0.04 -1.26 10.03 22.30 0.22 -1.03 16 13 C -0.20 -5.40 10.02 22.25 0.22 -5.17 16 14 C -0.03 -0.93 9.53 22.52 0.21 -0.72 16 15 C -0.25 -10.64 5.89 -19.98 -0.12 -10.75 16 16 C 0.56 24.82 6.85 86.70 0.59 25.42 16 17 O -0.55 -31.30 13.68 16.91 0.23 -31.07 16 18 N -0.70 -22.17 4.10 -434.49 -1.78 -23.96 16 19 C 0.14 4.22 1.19 3.10 0.00 4.23 16 20 C -0.09 -2.72 5.28 -19.87 -0.10 -2.83 16 21 C -0.12 -3.00 8.59 22.27 0.19 -2.81 16 22 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 23 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 24 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 25 C -0.12 -3.71 9.25 22.27 0.21 -3.50 16 26 C 0.03 0.96 7.47 63.83 0.48 1.44 16 27 O -0.38 -11.27 12.74 -148.98 -1.90 -13.16 16 28 C 0.05 1.08 8.06 63.83 0.51 1.59 16 29 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 30 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.16 3.24 6.42 -2.91 -0.02 3.22 16 34 H 0.41 9.69 6.87 -92.71 -0.64 9.06 16 35 H 0.14 2.78 6.48 -2.91 -0.02 2.76 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.10 3.52 6.97 -2.91 -0.02 3.50 16 40 H 0.06 2.51 6.71 -2.39 -0.02 2.49 16 41 H 0.11 3.08 6.29 -2.38 -0.01 3.06 16 42 H 0.12 1.84 7.56 -2.38 -0.02 1.82 16 43 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -89.46 360.87 3.88 -85.58 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.44 Total: 38.37 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.56 Total: -31.79 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.49 Total: -82.62 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -1.66 Total: -56.03 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -89.46 3.88 -85.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361658255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.661 kcal (2) G-P(sol) polarization free energy of solvation -89.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds