Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48496 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46687 * 300.00209 * 3 2 1 6 6 H 1.48502 * 109.46905 * 60.00081 * 3 2 1 7 7 C 1.39941 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00016 * 197.85318 * 7 2 1 9 9 C 1.41392 * 120.00049 * 17.85630 * 7 2 1 10 10 C 1.40719 * 120.24224 * 204.37655 * 9 7 2 11 11 C 1.37621 * 119.74206 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.25147 * 0.03137 * 11 10 9 13 13 C 1.50697 * 119.75171 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47670 * 89.99294 * 13 12 11 15 15 C 1.34772 * 120.00370 * 179.97438 * 14 13 12 16 16 O 1.21589 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.47548 * 120.00281 * 180.02562 * 15 14 13 18 18 C 1.39768 * 120.13976 * 0.02562 * 17 15 14 19 19 C 1.37739 * 119.95461 * 179.97438 * 18 17 15 20 20 C 1.38493 * 120.32800 * 0.09495 * 19 18 17 21 21 C 1.38589 * 120.40752 * 0.23847 * 20 19 18 22 22 C 1.38990 * 119.91063 * 359.36412 * 21 20 19 23 23 O 1.35812 * 120.87427 * 180.54603 * 22 21 20 24 24 C 1.43179 * 116.73690 * 343.00329 * 23 22 21 25 25 C 1.53467 * 108.25465 * 46.15811 * 24 23 22 26 26 O 1.36141 * 119.36269 * 179.97438 * 21 20 19 27 27 C 1.38639 * 120.49891 * 0.24343 * 12 11 10 28 28 C 1.37612 * 120.24957 * 359.45298 * 27 12 11 29 29 H 0.97003 * 120.00451 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.12914 * 0.02562 * 10 9 7 31 31 H 1.08007 * 119.87278 * 179.97438 * 11 10 9 32 32 H 1.09000 * 109.46910 * 329.99286 * 13 12 11 33 33 H 1.09002 * 109.46915 * 209.99837 * 13 12 11 34 34 H 0.96999 * 119.99437 * 0.02562 * 14 13 12 35 35 H 1.08003 * 120.02031 * 359.96797 * 18 17 15 36 36 H 1.07997 * 119.83872 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.79607 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.70979 * 165.84978 * 24 23 22 39 39 H 1.09005 * 109.70301 * 286.46659 * 24 23 22 40 40 H 1.08997 * 109.71038 * 60.01754 * 25 24 23 41 41 H 1.09003 * 109.71275 * 180.60311 * 25 24 23 42 42 H 1.07999 * 119.87271 * 179.70671 * 27 12 11 43 43 H 1.08004 * 120.13155 * 180.27453 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3522 -2.4068 -0.3765 10 6 1.8261 -3.6499 0.0820 11 6 1.1801 -4.8065 -0.2907 12 6 0.0671 -4.7501 -1.1153 13 6 -0.6312 -6.0237 -1.5169 14 7 -1.6743 -6.3386 -0.5377 15 6 -2.4343 -7.4407 -0.6934 16 8 -2.2539 -8.1739 -1.6464 17 6 -3.4852 -7.7575 0.2926 18 6 -3.6955 -6.9164 1.3890 19 6 -4.6780 -7.2156 2.3068 20 6 -5.4593 -8.3484 2.1507 21 6 -5.2585 -9.1959 1.0728 22 6 -4.2764 -8.9026 0.1340 23 8 -4.0703 -9.7136 -0.9357 24 6 -4.6203 -11.0334 -0.8588 25 6 -6.0640 -10.9236 -0.3501 26 8 -6.0385 -10.3039 0.9404 27 6 -0.4051 -3.5314 -1.5776 28 6 0.2212 -2.3617 -1.2126 29 1 -0.4851 0.8400 0.0004 30 1 2.6933 -3.6961 0.7241 31 1 1.5423 -5.7618 0.0597 32 1 0.0917 -6.8387 -1.5525 33 1 -1.0830 -5.8956 -2.5006 34 1 -1.8184 -5.7534 0.2224 35 1 -3.0879 -6.0326 1.5163 36 1 -4.8391 -6.5642 3.1530 37 1 -6.2270 -8.5749 2.8758 38 1 -4.6128 -11.4928 -1.8472 39 1 -4.0319 -11.6371 -0.1678 40 1 -6.6511 -10.3156 -1.0383 41 1 -6.5030 -11.9183 -0.2723 42 1 -1.2702 -3.4996 -2.2233 43 1 -0.1510 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361892443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -64.317771 kcal Electronic energy + Delta-G solvation = -27783.297136 eV Core-core repulsion = 23758.614491 eV Total energy + Delta-G solvation = -4024.682645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50773 -39.40049 -37.79343 -37.57325 -37.14532 -34.67977 -33.43756 -31.50552 -31.28139 -30.05730 -29.34843 -28.63627 -26.96402 -24.98749 -24.34411 -23.16374 -21.21252 -21.07526 -20.34719 -20.09704 -18.97147 -17.68164 -17.50766 -17.39243 -16.47585 -15.69294 -15.51377 -15.33791 -15.24514 -14.86521 -14.74875 -14.42301 -14.19450 -14.01909 -13.77974 -13.66777 -13.37391 -13.07197 -12.54528 -12.37101 -12.09751 -12.02003 -11.91981 -11.68372 -11.37410 -11.31673 -11.16722 -11.03506 -10.86926 -10.71508 -10.44776 -9.77075 -9.56019 -9.47394 -9.22093 -8.89670 -8.53754 -8.27471 -7.57212 -7.45121 -6.87475 -4.46626 0.70559 1.11690 2.56509 2.74437 2.97916 3.00054 3.01629 3.02911 3.04070 3.07933 3.62892 3.80308 3.85402 3.98205 4.40817 4.52849 4.55698 4.61877 4.80126 4.89467 4.94021 5.12508 5.19137 5.29140 5.48854 5.60132 5.77516 5.84890 5.92189 5.94139 6.18672 6.24896 6.32293 6.35890 6.37064 6.67337 6.86950 6.88259 6.97532 7.18467 7.19559 7.26649 7.51381 7.70873 7.95670 7.97065 8.02423 8.19368 8.53683 8.58153 8.78756 8.86541 10.06496 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.002162 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.226918 B =12945.774563 C =13663.129606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.245 4.245 13 C 0.186 3.814 14 N -0.714 5.714 15 C 0.551 3.449 16 O -0.530 6.530 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.124 4.124 20 C -0.092 4.092 21 C 0.034 3.966 22 C 0.106 3.894 23 O -0.269 6.269 24 C 0.014 3.986 25 C 0.019 3.981 26 O -0.307 6.307 27 C -0.081 4.081 28 C -0.169 4.169 29 H 0.281 0.719 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 -14.897 3.085 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.247 4.247 13 C 0.064 3.936 14 N -0.366 5.366 15 C 0.337 3.663 16 O -0.408 6.408 17 C -0.134 4.134 18 C -0.099 4.099 19 C -0.143 4.143 20 C -0.111 4.111 21 C -0.011 4.011 22 C 0.059 3.941 23 O -0.181 6.181 24 C -0.061 4.061 25 C -0.056 4.056 26 O -0.222 6.222 27 C -0.100 4.100 28 C -0.188 4.188 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.106 0.894 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.157 -15.315 2.335 19.692 hybrid contribution 0.129 0.917 0.374 0.999 sum -12.027 -14.398 2.709 18.955 Atomic orbital electron populations 1.69826 1.07635 1.29346 1.34413 1.25950 0.94753 1.01480 0.92133 0.86260 0.81056 0.80804 0.78649 1.18321 1.19614 1.19914 1.19687 0.98226 0.91266 1.39472 0.90244 1.17678 0.90882 0.92059 0.88050 1.20977 1.03963 0.92803 1.07173 1.20414 0.95109 0.96522 0.96814 1.18993 1.02053 0.92722 1.10885 1.19951 0.87932 0.95094 0.90576 1.46437 1.35858 1.25252 1.29021 1.17985 0.81440 0.81664 0.85230 1.90782 1.69520 1.49202 1.31300 1.19528 0.98917 0.96514 0.98447 1.21261 0.97661 0.98573 0.92402 1.20855 0.96164 0.97068 1.00171 1.20583 1.00636 0.92860 0.96993 1.18779 0.93410 0.90867 0.98055 1.18900 0.93858 0.92496 0.88890 1.86629 1.72838 1.22939 1.35718 1.23715 0.93769 0.83853 1.04809 1.23662 0.97546 1.00123 0.84281 1.86305 1.64073 1.39432 1.32416 1.20569 0.98064 0.92551 0.98834 1.21314 0.99538 0.96768 1.01228 0.90760 0.88897 0.89354 0.92352 0.92290 0.76525 0.84259 0.84304 0.84510 0.85899 0.90443 0.90397 0.86032 0.89366 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.47 10.95 55.55 0.61 -18.86 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.46 -11.66 9.05 -37.75 -0.34 -12.00 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.12 2.96 5.57 -106.82 -0.60 2.36 16 10 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 11 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 12 C -0.24 -5.06 5.27 -104.33 -0.55 -5.61 16 13 C 0.19 3.43 5.79 -5.20 -0.03 3.40 16 14 N -0.71 -12.01 5.50 -62.53 -0.34 -12.35 16 15 C 0.55 9.66 7.76 -12.47 -0.10 9.56 16 16 O -0.53 -10.93 15.10 -16.87 -0.25 -11.19 16 17 C -0.13 -1.94 5.89 -104.84 -0.62 -2.56 16 18 C -0.08 -0.96 9.53 -39.19 -0.37 -1.33 16 19 C -0.12 -1.24 10.02 -39.67 -0.40 -1.64 16 20 C -0.09 -0.95 9.95 -39.36 -0.39 -1.35 16 21 C 0.03 0.41 6.49 -39.17 -0.25 0.16 16 22 C 0.11 1.53 6.51 -38.61 -0.25 1.28 16 23 O -0.27 -3.96 8.42 -47.38 -0.40 -4.36 16 24 C 0.01 0.13 7.26 37.40 0.27 0.40 16 25 C 0.02 0.15 7.26 37.40 0.27 0.42 16 26 O -0.31 -3.36 10.42 -33.01 -0.34 -3.70 16 27 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 28 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 29 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 30 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 32 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.40 6.13 6.49 -40.82 -0.26 5.87 16 35 H 0.14 1.49 6.40 -52.48 -0.34 1.15 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.12 3.05 6.16 -52.48 -0.32 2.72 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -30.67 364.90 -10.31 -40.98 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.12 Total: 10.54 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -4.93 Total: -19.50 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.26 Total: -31.21 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -1.00 Total: -19.25 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.67 -10.31 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361892443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds