Wall clock time and date at job start Sat Apr 11 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86796 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47153 * 274.66254 * 3 2 1 5 5 H 1.48503 * 109.47214 * 34.65935 * 3 2 1 6 6 H 1.48502 * 109.47499 * 154.66063 * 3 2 1 7 7 C 1.39941 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99802 * 162.23184 * 7 2 1 9 9 C 1.41401 * 120.00197 * 342.23995 * 7 2 1 10 10 C 1.40715 * 120.24146 * 155.28328 * 9 7 2 11 11 C 1.37623 * 119.73893 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24797 * 0.02582 * 11 10 9 13 13 C 1.50709 * 119.74657 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.46863 * 89.99962 * 13 12 11 15 15 C 1.34772 * 119.99752 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00232 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99833 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.70757 * 55.58786 * 17 15 14 19 19 C 1.53470 * 109.70695 * 294.99974 * 17 15 14 20 20 O 1.43180 * 108.24827 * 180.53374 * 19 17 15 21 21 C 1.36113 * 116.71471 * 46.16299 * 20 19 17 22 22 C 1.38704 * 119.39638 * 162.95483 * 21 20 19 23 23 C 1.38193 * 120.06544 * 179.80404 * 22 21 20 24 24 C 1.38247 * 120.11662 * 0.24597 * 23 22 21 25 25 C 1.38204 * 120.11075 * 359.50096 * 24 23 22 26 26 C 1.38698 * 120.06377 * 0.56252 * 25 24 23 27 27 O 1.36113 * 119.39694 * 179.53419 * 26 25 24 28 28 C 1.38636 * 120.50479 * 0.24943 * 12 11 10 29 29 C 1.37617 * 120.24319 * 359.44512 * 28 12 11 30 30 H 0.97010 * 119.99764 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.13386 * 0.04459 * 10 9 7 32 32 H 1.07995 * 119.87482 * 179.97438 * 11 10 9 33 33 H 1.08991 * 109.47055 * 330.00379 * 13 12 11 34 34 H 1.08998 * 109.46659 * 209.99579 * 13 12 11 35 35 H 0.96997 * 119.99827 * 0.02562 * 14 13 12 36 36 H 1.08998 * 109.71196 * 60.84930 * 19 17 15 37 37 H 1.08995 * 109.74423 * 300.23984 * 19 17 15 38 38 H 1.07999 * 119.96148 * 359.82466 * 22 21 20 39 39 H 1.07999 * 119.94277 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.94794 * 179.75793 * 24 23 22 41 41 H 1.07998 * 119.97079 * 180.29810 * 25 24 23 42 42 H 1.07997 * 119.87630 * 179.70958 * 28 12 11 43 43 H 1.07998 * 120.12137 * 180.27178 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4138 0.5992 7 6 2.0079 -1.2119 0.0005 8 1 3.0493 -1.2343 -0.2849 9 6 1.3515 -2.4072 0.3746 10 6 1.8218 -3.6493 -0.0901 11 6 1.1746 -4.8061 0.2800 12 6 0.0633 -4.7507 1.1068 13 6 -0.6371 -6.0245 1.5046 14 7 -0.0451 -6.5416 2.7410 15 6 -0.5152 -7.6799 3.2884 16 8 -1.4280 -8.2764 2.7574 17 6 0.0933 -8.2115 4.5606 18 1 0.0536 -7.4455 5.3351 19 6 1.5518 -8.6161 4.3069 20 8 2.0944 -9.1270 5.5295 21 6 1.3265 -10.0179 6.2146 22 6 1.9110 -10.8112 7.1908 23 6 1.1436 -11.7174 7.8976 24 6 -0.2073 -11.8395 7.6305 25 6 -0.7970 -11.0484 6.6627 26 6 -0.0323 -10.1379 5.9488 27 8 -0.6251 -9.3724 4.9921 28 6 -0.4121 -3.5321 1.5660 29 6 0.2229 -2.3631 1.2138 30 1 -0.4850 0.8401 -0.0004 31 1 2.6873 -3.6947 -0.7345 32 1 1.5334 -5.7606 -0.0758 33 1 -0.5251 -6.7636 0.7114 34 1 -1.6958 -5.8219 1.6657 35 1 0.6846 -6.0643 3.1659 36 1 2.1243 -7.7458 3.9862 37 1 1.5916 -9.3864 3.5369 38 1 2.9669 -10.7203 7.3988 39 1 1.6008 -12.3343 8.6570 40 1 -0.8037 -12.5513 8.1818 41 1 -1.8535 -11.1423 6.4593 42 1 -1.2815 -3.5004 2.2059 43 1 -0.1466 -1.4152 1.5762 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412213066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:45 Heat of formation + Delta-G solvation = -80.330630 kcal Electronic energy + Delta-G solvation = -27473.443083 eV Core-core repulsion = 23448.066068 eV Total energy + Delta-G solvation = -4025.377015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.54527 -40.77061 -39.47348 -38.56747 -38.32151 -36.39731 -35.19842 -33.01997 -31.80219 -31.64976 -31.17488 -29.78314 -28.44526 -26.48759 -25.28686 -23.84263 -22.92176 -22.67353 -21.87276 -21.42905 -19.91664 -19.24754 -19.08036 -18.54523 -17.47696 -17.22278 -16.90073 -16.77057 -16.27748 -16.01207 -15.83964 -15.64471 -15.54818 -15.36284 -15.12184 -14.87484 -14.81266 -14.40891 -14.26490 -13.83920 -13.61747 -13.34557 -13.15015 -12.96923 -12.86417 -12.74518 -12.41851 -12.40908 -12.21243 -12.18770 -11.71103 -11.50558 -11.31198 -11.12183 -10.98468 -10.21307 -9.67742 -9.40561 -9.29877 -9.14901 -8.68378 -6.38041 0.27891 0.28488 0.78188 1.13096 1.25990 1.37066 1.39723 1.52044 1.59467 1.97720 2.18900 2.46832 2.71452 2.74861 3.02845 3.45822 3.53155 3.59556 3.73868 4.00982 4.12255 4.13837 4.24855 4.28993 4.32630 4.42214 4.51361 4.53118 4.64553 4.75534 4.83868 5.04651 5.13813 5.15400 5.20111 5.27010 5.34943 5.42224 5.50474 5.67726 5.68386 5.78453 5.89711 6.08004 6.18397 6.28833 6.35301 6.41377 6.67169 6.90861 6.99507 6.99956 8.28118 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.001945 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.316651 B =14395.180016 C =14890.911091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.065 4.065 12 C -0.229 4.229 13 C 0.194 3.806 14 N -0.698 5.698 15 C 0.524 3.476 16 O -0.564 6.564 17 C 0.038 3.962 18 H 0.127 0.873 19 C 0.038 3.962 20 O -0.307 6.307 21 C 0.024 3.976 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.109 4.109 25 C -0.127 4.127 26 C 0.024 3.976 27 O -0.308 6.308 28 C -0.081 4.081 29 C -0.193 4.193 30 H 0.289 0.711 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -16.965 14.796 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.524 4.524 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.262 4.262 11 C -0.083 4.083 12 C -0.230 4.230 13 C 0.072 3.928 14 N -0.350 5.350 15 C 0.308 3.692 16 O -0.442 6.442 17 C -0.023 4.023 18 H 0.145 0.855 19 C -0.038 4.038 20 O -0.222 6.222 21 C -0.020 4.020 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.146 4.146 26 C -0.021 4.021 27 O -0.222 6.222 28 C -0.100 4.100 29 C -0.213 4.213 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.251 0.749 36 H 0.174 0.826 37 H 0.098 0.902 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.181 0.819 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.546 -17.188 14.334 22.525 hybrid contribution 0.246 1.496 -0.462 1.585 sum 2.792 -15.692 13.873 21.130 Atomic orbital electron populations 1.69872 1.09031 1.30703 1.34981 1.26769 0.95465 1.04605 0.91196 0.85218 0.79296 0.76051 0.79350 1.18857 1.19151 1.18093 1.19908 0.98459 0.92525 1.41499 0.90412 1.18020 0.91644 0.93170 0.88785 1.21165 1.04609 0.93009 1.07428 1.20700 0.94420 0.97052 0.96175 1.19124 1.01836 0.92828 1.09236 1.19817 0.95721 0.92311 0.84932 1.46175 1.38144 1.23957 1.26761 1.19958 0.83075 0.81208 0.84910 1.90725 1.30634 1.59360 1.63523 1.22975 0.93347 0.88971 0.96957 0.85540 1.23674 0.91981 1.02606 0.85525 1.86328 1.43194 1.57147 1.35489 1.19289 0.88638 0.95832 0.98277 1.20823 1.01799 0.95226 0.95882 1.21380 0.93685 0.97814 0.99866 1.21338 0.95696 0.98993 0.96667 1.20771 1.00571 0.96795 0.96419 1.19371 0.91159 0.97316 0.94225 1.86352 1.45197 1.36614 1.54065 1.20763 0.98154 0.92409 0.98665 1.21262 1.00347 0.97098 1.02552 0.90030 0.88301 0.86259 0.91472 0.92315 0.74862 0.82553 0.90199 0.83129 0.81582 0.81907 0.84471 0.87747 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.50 10.97 21.82 0.24 -41.26 16 2 C 0.04 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.98 36.64 29.59 68.60 2.03 38.67 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.49 -25.46 9.05 23.46 0.21 -25.25 16 8 H 0.08 3.85 7.91 -2.91 -0.02 3.83 16 9 C 0.09 4.39 5.57 -21.29 -0.12 4.27 16 10 C -0.24 -10.95 9.80 22.73 0.22 -10.73 16 11 C -0.06 -2.51 9.67 22.22 0.21 -2.29 16 12 C -0.23 -8.53 5.27 -19.67 -0.10 -8.64 16 13 C 0.19 6.16 5.79 85.63 0.50 6.66 16 14 N -0.70 -18.45 5.52 -466.77 -2.57 -21.03 16 15 C 0.52 15.15 7.20 87.66 0.63 15.78 16 16 O -0.56 -21.42 16.52 15.79 0.26 -21.16 16 17 C 0.04 0.90 3.44 30.01 0.10 1.01 16 18 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 19 C 0.04 0.76 6.52 72.14 0.47 1.23 16 20 O -0.31 -6.84 10.42 -82.61 -0.86 -7.70 16 21 C 0.02 0.55 6.49 22.56 0.15 0.69 16 22 C -0.12 -2.00 9.96 22.37 0.22 -1.77 16 23 C -0.11 -1.36 10.04 22.26 0.22 -1.14 16 24 C -0.11 -1.48 10.04 22.26 0.22 -1.26 16 25 C -0.13 -2.55 9.96 22.37 0.22 -2.32 16 26 C 0.02 0.59 6.49 22.56 0.15 0.74 16 27 O -0.31 -8.96 9.62 -69.06 -0.66 -9.62 16 28 C -0.08 -3.41 9.67 22.22 0.21 -3.20 16 29 C -0.19 -9.53 8.70 22.73 0.20 -9.33 16 30 H 0.29 13.22 8.30 -92.70 -0.77 12.45 16 31 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 32 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 34 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.41 9.13 8.32 -92.71 -0.77 8.36 16 36 H 0.16 2.18 7.99 -2.39 -0.02 2.17 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 41 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.10 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.10 5.21 6.18 -2.91 -0.02 5.19 16 Total: -1.00 -66.05 370.29 2.87 -63.18 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.28 Total: 32.33 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.16 Total: -33.41 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -2.34 Total: -62.29 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.26 Total: -38.49 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -66.05 2.87 -63.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412213066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.152 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds