Wall clock time and date at job start Sat Apr 11 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47279 * 300.00520 * 3 2 1 6 6 H 1.48498 * 109.47316 * 60.00435 * 3 2 1 7 7 C 1.38657 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 O 1.21278 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00291 * 179.97438 * 16 15 14 19 19 C 1.46629 * 126.55745 * 359.68776 * 18 16 15 20 20 C 1.50793 * 107.70749 * 179.90563 * 19 18 16 21 21 C 1.38495 * 131.12886 * 180.08949 * 20 19 18 22 22 C 1.38047 * 120.17970 * 180.30588 * 21 20 19 23 23 C 1.38750 * 119.90110 * 0.02562 * 22 21 20 24 24 O 1.35904 * 120.07935 * 180.02562 * 23 22 21 25 25 C 1.38638 * 119.84666 * 359.97337 * 23 22 21 26 26 C 1.38107 * 108.84709 * 0.37040 * 20 19 18 27 27 C 1.46630 * 126.55856 * 180.02562 * 18 16 15 28 28 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 29 29 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 32 32 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 33 33 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 34 34 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 35 35 H 1.08999 * 109.81059 * 299.59051 * 19 18 16 36 36 H 1.09006 * 109.81018 * 60.48652 * 19 18 16 37 37 H 1.08004 * 119.91501 * 0.32905 * 21 20 19 38 38 H 1.08002 * 120.05013 * 180.02562 * 22 21 20 39 39 H 0.96693 * 114.00264 * 89.99115 * 24 23 22 40 40 H 1.08001 * 119.97069 * 180.02562 * 25 23 22 41 41 H 1.08999 * 109.80672 * 299.50654 * 27 18 16 42 42 H 1.08997 * 109.81582 * 60.41676 * 27 18 16 43 43 H 1.07996 * 120.03714 * 179.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8910 2.3963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1060 11 6 3.4574 -3.4390 0.0992 12 6 4.2024 -4.5969 0.2025 13 6 3.5685 -5.8204 0.3237 14 6 2.1875 -5.8886 0.3361 15 6 1.5010 -7.2235 0.4688 16 6 1.2780 -7.5310 1.9271 17 8 1.6405 -6.7435 2.7751 18 7 0.6749 -8.6807 2.2889 19 6 0.1753 -9.7255 1.3895 20 6 -0.4161 -10.8200 2.2416 21 6 -1.0145 -12.0204 1.8965 22 6 -1.4911 -12.8657 2.8783 23 6 -1.3709 -12.5113 4.2144 24 8 -1.8384 -13.3409 5.1839 25 6 -0.7716 -11.3093 4.5581 26 6 -0.2948 -10.4653 3.5708 27 6 0.3868 -9.1230 3.6569 28 6 1.4366 -4.7343 0.2280 29 1 -0.4850 0.8401 0.0004 30 1 3.9529 -2.4836 0.0087 31 1 5.2812 -4.5469 0.1932 32 1 4.1534 -6.7242 0.4091 33 1 0.5411 -7.1912 -0.0466 34 1 2.1256 -7.9990 0.0253 35 1 -0.5896 -9.3122 0.7321 36 1 0.9971 -10.1256 0.7955 37 1 -1.1081 -12.2962 0.8565 38 1 -1.9570 -13.8015 2.6069 39 1 -1.1877 -13.9824 5.5001 40 1 -0.6766 -11.0316 5.5975 41 1 1.3163 -9.2161 4.2184 42 1 -0.2713 -8.4051 4.1464 43 1 0.3580 -4.7882 0.2374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418502069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:09 Heat of formation + Delta-G solvation = -63.003676 kcal Electronic energy + Delta-G solvation = -27211.896748 eV Core-core repulsion = 23187.271087 eV Total energy + Delta-G solvation = -4024.625661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87566 -40.90646 -40.22608 -38.78308 -38.08306 -36.26708 -34.34986 -33.62751 -32.55656 -31.44065 -30.85728 -29.20827 -28.06987 -27.25706 -25.95404 -23.30400 -22.95854 -22.64750 -22.37924 -20.71551 -19.45137 -19.07118 -18.73874 -18.23675 -17.40601 -17.15141 -16.74171 -16.48134 -16.38987 -16.25414 -16.07722 -15.70859 -15.46499 -15.27608 -14.80868 -14.57584 -14.39809 -14.33610 -14.03130 -13.99203 -13.64847 -13.59588 -12.99782 -12.96742 -12.86804 -12.79127 -12.54695 -12.51222 -12.34111 -12.22380 -12.08487 -11.42669 -11.21821 -11.12211 -10.81009 -10.17586 -9.84389 -9.65137 -9.25386 -8.97942 -8.47491 -6.15830 0.13141 0.26889 0.49777 0.75500 1.33481 1.42378 1.52438 1.53639 1.77820 2.17244 2.52596 2.82526 3.00541 3.14319 3.37592 3.43660 3.47725 3.75582 3.96859 3.97956 4.10060 4.23391 4.30235 4.35947 4.38922 4.41386 4.49954 4.54701 4.58671 4.61515 4.63145 4.74176 4.83943 4.96610 5.02252 5.08485 5.13048 5.20638 5.30423 5.39450 5.49376 5.64800 5.72606 5.74922 5.77962 6.02735 6.21831 6.36841 6.84251 6.97222 7.05445 7.79015 8.76363 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.001922 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.812532 B =14564.168611 C =15041.482104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.245 4.245 12 C -0.074 4.074 13 C -0.178 4.178 14 C -0.028 4.028 15 C -0.081 4.081 16 C 0.537 3.463 17 O -0.573 6.573 18 N -0.620 5.620 19 C 0.140 3.860 20 C -0.121 4.121 21 C -0.071 4.071 22 C -0.141 4.141 23 C 0.106 3.894 24 O -0.509 6.509 25 C -0.135 4.135 26 C -0.100 4.100 27 C 0.147 3.853 28 C -0.192 4.192 29 H 0.272 0.728 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.412 0.588 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -30.980 2.784 31.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.264 4.264 12 C -0.092 4.092 13 C -0.197 4.197 14 C -0.029 4.029 15 C -0.120 4.120 16 C 0.328 3.672 17 O -0.451 6.451 18 N -0.354 5.354 19 C 0.018 3.982 20 C -0.121 4.121 21 C -0.089 4.089 22 C -0.159 4.159 23 C 0.061 3.939 24 O -0.322 6.322 25 C -0.154 4.154 26 C -0.101 4.101 27 C 0.024 3.976 28 C -0.211 4.211 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.272 0.728 40 H 0.151 0.849 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.910 -29.989 3.115 30.164 hybrid contribution 0.336 1.058 0.626 1.274 sum 1.246 -28.931 3.741 29.199 Atomic orbital electron populations 1.70202 1.08028 1.28670 1.49182 1.26632 0.96925 1.02802 0.95961 0.84504 0.78205 0.74714 0.78592 1.17473 1.19012 1.19501 1.21868 0.92509 0.81490 1.53024 0.88192 1.83935 1.35930 1.12556 1.81746 1.19882 0.91713 0.87928 0.94434 1.21307 0.93098 1.00232 1.11786 1.21142 1.00271 0.91432 0.96327 1.20986 0.93425 0.98255 1.07009 1.19165 0.93818 0.92884 0.96999 1.20672 1.04487 0.95433 0.91438 1.20634 0.76019 0.78524 0.92028 1.90776 1.51956 1.47943 1.54467 1.47986 1.59571 1.19764 1.08126 1.20610 1.00370 0.85376 0.91832 1.20486 1.00995 0.96552 0.94101 1.20666 0.95780 0.91125 1.01348 1.21643 1.01071 1.01746 0.91480 1.18386 0.96218 0.90772 0.88511 1.84789 1.42551 1.49838 1.55039 1.20824 0.99915 0.94843 0.99818 1.20054 0.99849 0.95239 0.94951 1.20124 0.99682 0.92618 0.85180 1.20223 0.99301 0.90480 1.11107 0.91882 0.86449 0.83604 0.83338 0.85791 0.83386 0.87917 0.86678 0.81994 0.82682 0.72842 0.84880 0.90348 0.91563 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.58 13.67 21.61 0.30 -58.29 16 2 C -0.03 -1.55 5.49 84.83 0.47 -1.09 16 3 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 4 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.41 -25.16 9.49 67.92 0.64 -24.51 16 8 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 9 O -0.23 -14.87 9.76 -22.75 -0.22 -15.09 16 10 C 0.11 5.87 6.65 22.58 0.15 6.02 16 11 C -0.24 -11.38 9.17 22.39 0.21 -11.18 16 12 C -0.07 -2.69 10.04 22.25 0.22 -2.47 16 13 C -0.18 -5.84 9.70 22.30 0.22 -5.62 16 14 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 15 C -0.08 -1.90 5.08 29.10 0.15 -1.75 16 16 C 0.54 15.43 7.86 87.66 0.69 16.12 16 17 O -0.57 -23.22 16.41 -3.02 -0.05 -23.27 16 18 N -0.62 -13.50 3.34 -829.50 -2.77 -16.27 16 19 C 0.14 1.78 6.54 85.64 0.56 2.34 16 20 C -0.12 -1.65 6.22 -19.80 -0.12 -1.77 16 21 C -0.07 -0.67 10.04 22.29 0.22 -0.45 16 22 C -0.14 -1.45 9.99 22.35 0.22 -1.22 16 23 C 0.11 1.42 6.70 22.49 0.15 1.57 16 24 O -0.51 -5.81 13.50 -92.47 -1.25 -7.06 16 25 C -0.14 -2.13 9.99 22.40 0.22 -1.91 16 26 C -0.10 -1.74 6.21 -19.84 -0.12 -1.87 16 27 C 0.15 3.20 6.91 85.64 0.59 3.80 16 28 C -0.19 -8.74 9.65 22.39 0.22 -8.52 16 29 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 31 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.15 2.07 8.09 -2.38 -0.02 2.05 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.41 0.60 9.06 -74.06 -0.67 -0.07 16 40 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -88.93 372.93 3.02 -85.91 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.39 Total: 21.06 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.60 Total: -33.60 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -2.47 Total: -74.56 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.52 Total: -45.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -88.93 3.02 -85.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418502069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.908 kcal (2) G-P(sol) polarization free energy of solvation -88.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds