Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86795 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47292 * 270.00136 * 3 2 1 5 5 H 1.48500 * 109.47020 * 30.00191 * 3 2 1 6 6 H 1.48500 * 109.47281 * 149.99981 * 3 2 1 7 7 C 1.40270 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99643 * 188.97147 * 7 2 1 9 9 C 1.40888 * 120.00615 * 8.97023 * 7 2 1 10 10 C 1.40712 * 120.32624 * 35.85721 * 9 7 2 11 11 C 1.37592 * 119.88420 * 180.30082 * 10 9 7 12 12 C 1.38833 * 120.56846 * 359.67402 * 11 10 9 13 13 C 1.38219 * 120.67363 * 0.02562 * 12 11 10 14 14 C 1.39225 * 120.09670 * 0.02562 * 13 12 11 15 15 C 1.47430 * 120.28521 * 180.02562 * 14 13 12 16 16 O 1.21612 * 119.99893 * 175.34290 * 15 14 13 17 17 N 1.34778 * 120.00084 * 355.34630 * 15 14 13 18 18 C 1.46491 * 120.00051 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.72938 * 325.58419 * 18 17 15 20 20 C 1.53412 * 109.69815 * 86.15595 * 18 17 15 21 21 O 1.42830 * 108.37313 * 54.98462 * 20 18 17 22 22 C 1.35847 * 117.85952 * 49.18482 * 21 20 18 23 23 C 1.39149 * 118.50250 * 162.93919 * 22 21 20 24 24 C 1.37962 * 120.21611 * 179.71570 * 23 22 21 25 25 C 1.38289 * 119.95885 * 0.02562 * 24 23 22 26 26 C 1.38096 * 119.98474 * 0.09009 * 25 24 23 27 27 C 1.38367 * 121.80604 * 342.78940 * 22 21 20 28 28 C 1.50771 * 121.40525 * 0.46639 * 27 22 21 29 29 H 1.09005 * 109.43652 * 222.13324 * 28 27 22 30 30 O 1.42901 * 109.43815 * 102.21812 * 28 27 22 31 31 H 0.97000 * 119.99831 * 0.02562 * 1 2 3 32 32 H 1.08005 * 120.05617 * 359.97357 * 10 9 7 33 33 H 1.07998 * 119.71940 * 179.70161 * 11 10 9 34 34 H 1.07994 * 119.66307 * 180.02562 * 12 11 10 35 35 H 1.08007 * 119.95367 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99461 * 359.97438 * 17 15 14 37 37 H 1.08995 * 109.68349 * 174.70419 * 20 18 17 38 38 H 1.08996 * 109.68258 * 295.26656 * 20 18 17 39 39 H 1.08001 * 119.88810 * 359.72504 * 23 22 21 40 40 H 1.08001 * 120.02029 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.00580 * 180.36467 * 25 24 23 42 42 H 1.08004 * 119.84627 * 179.91024 * 26 25 24 43 43 H 0.96698 * 113.99695 * 59.99809 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4000 5 1 1.4377 2.6526 0.7001 6 1 3.5378 1.4401 0.7000 7 6 2.0076 -1.2148 -0.0005 8 1 3.0777 -1.2206 0.1453 9 6 1.3161 -2.4274 -0.1913 10 6 0.2162 -2.4880 -1.0668 11 6 -0.4564 -3.6755 -1.2416 12 6 -0.0554 -4.8201 -0.5658 13 6 1.0256 -4.7885 0.2949 14 6 1.7256 -3.6015 0.4933 15 6 2.8796 -3.5632 1.4100 16 8 3.5390 -2.5469 1.5154 17 7 3.2039 -4.6547 2.1312 18 6 4.3509 -4.6168 3.0417 19 1 5.1328 -3.9836 2.6223 20 6 3.9121 -4.0631 4.4034 21 8 2.8194 -4.8505 4.8787 22 6 2.9546 -6.2021 4.8580 23 6 2.0854 -6.9683 5.6285 24 6 2.1873 -8.3441 5.6293 25 6 3.1563 -8.9652 4.8628 26 6 4.0223 -8.2080 4.0987 27 6 3.9247 -6.8263 4.0939 28 6 4.8909 -6.0338 3.2505 29 1 5.0128 -6.5216 2.2833 30 8 6.1558 -5.9670 3.9121 31 1 -0.4850 0.8401 -0.0004 32 1 -0.1029 -1.6025 -1.5966 33 1 -1.3032 -3.7178 -1.9105 34 1 -0.5936 -5.7445 -0.7142 35 1 1.3278 -5.6860 0.8143 36 1 2.6777 -5.4652 2.0474 37 1 4.7414 -4.1224 5.1083 38 1 3.5965 -3.0256 4.2934 39 1 1.3284 -6.4842 6.2278 40 1 1.5107 -8.9357 6.2282 41 1 3.2330 -10.0425 4.8582 42 1 4.7792 -8.6953 3.5020 43 1 6.5603 -6.8300 4.0753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434029231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -90.108289 kcal Electronic energy + Delta-G solvation = -29353.024582 eV Core-core repulsion = 25327.223576 eV Total energy + Delta-G solvation = -4025.801006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.16614 -40.54728 -38.80823 -38.33100 -37.96920 -35.85755 -35.30014 -32.73196 -31.91928 -31.57156 -31.22373 -30.17888 -27.32328 -26.52088 -24.85735 -23.86860 -23.44437 -22.77664 -21.36113 -20.84693 -19.36799 -18.95530 -18.45185 -18.25467 -17.53555 -17.09662 -16.89113 -16.43192 -16.27324 -15.99276 -15.78392 -15.63812 -15.20235 -15.00573 -14.84409 -14.67080 -14.62783 -14.49863 -13.95082 -13.51649 -13.34681 -13.23792 -12.98810 -12.86699 -12.83322 -12.46801 -12.36000 -12.26251 -12.12866 -11.93729 -11.75100 -11.49355 -11.14698 -11.09074 -10.31388 -10.11080 -9.88774 -9.43536 -9.23209 -9.17063 -8.68784 -6.38659 0.27195 0.45500 0.48920 1.00012 1.33138 1.45057 1.50424 2.00730 2.20849 2.28515 2.37060 2.77825 2.78804 3.19696 3.42711 3.60265 3.65759 3.71655 3.94542 4.14791 4.22986 4.26701 4.33592 4.35332 4.42801 4.51304 4.57146 4.58259 4.62386 4.76059 4.90867 5.03602 5.07392 5.22539 5.31784 5.32909 5.44427 5.50291 5.57130 5.59705 5.79820 5.86125 6.02991 6.09386 6.32898 6.42658 6.57875 6.70412 6.76062 6.89365 6.97925 7.57316 8.29517 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.003593 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.365521 B = 7790.928387 C = 8750.264655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.978 3.022 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.088 0.912 9 C 0.119 3.881 10 C -0.174 4.174 11 C -0.091 4.091 12 C -0.234 4.234 13 C -0.054 4.054 14 C -0.279 4.279 15 C 0.567 3.433 16 O -0.572 6.572 17 N -0.714 5.714 18 C 0.118 3.882 19 H 0.093 0.907 20 C 0.058 3.942 21 O -0.328 6.328 22 C 0.122 3.878 23 C -0.173 4.173 24 C -0.075 4.075 25 C -0.154 4.154 26 C -0.071 4.071 27 C -0.215 4.215 28 C 0.160 3.840 29 H 0.093 0.907 30 O -0.562 6.562 31 H 0.289 0.711 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.403 0.597 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 -18.051 8.529 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.115 3.885 10 C -0.194 4.194 11 C -0.109 4.109 12 C -0.253 4.253 13 C -0.073 4.073 14 C -0.284 4.284 15 C 0.361 3.639 16 O -0.454 6.454 17 N -0.368 5.368 18 C 0.012 3.988 19 H 0.111 0.889 20 C -0.018 4.018 21 O -0.242 6.242 22 C 0.076 3.924 23 C -0.191 4.191 24 C -0.093 4.093 25 C -0.171 4.171 26 C -0.089 4.089 27 C -0.216 4.216 28 C 0.101 3.899 29 H 0.111 0.889 30 O -0.371 6.371 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.240 0.760 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.172 0.828 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.100 -16.425 8.659 19.544 hybrid contribution 0.064 0.453 -0.027 0.458 sum 6.164 -15.973 8.632 19.174 Atomic orbital electron populations 1.69743 1.08659 1.30646 1.35921 1.26809 0.95578 1.04337 0.91526 0.85267 0.78826 0.76247 0.79764 1.17792 1.18831 1.19652 1.20270 0.96963 0.91050 1.40917 0.89406 1.17838 0.90837 0.92105 0.87707 1.21290 0.99709 0.97143 1.01221 1.21183 0.98247 0.92921 0.98585 1.20788 1.01391 0.98556 1.04539 1.21009 0.94467 0.95338 0.96445 1.19772 1.03716 0.97167 1.07751 1.18403 0.83999 0.82151 0.79371 1.90637 1.54091 1.32164 1.68465 1.45497 1.31844 1.15495 1.43984 1.21223 0.89713 0.97741 0.90156 0.88871 1.23301 0.89185 0.94396 0.94910 1.86011 1.41940 1.15637 1.80590 1.19179 0.95949 0.82415 0.94820 1.20864 1.01710 0.94700 1.01870 1.21334 0.97787 0.92545 0.97587 1.21406 0.96133 1.01473 0.98137 1.21230 0.99018 0.90922 0.97709 1.20475 1.01251 0.96288 1.03606 1.20401 0.82734 0.92029 0.94755 0.88900 1.86478 1.32714 1.36863 1.81042 0.90038 0.88294 0.86058 0.84948 0.85769 0.76048 0.89266 0.89307 0.85477 0.82740 0.82628 0.82770 0.74622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.64 11.25 21.88 0.25 -44.40 16 2 C 0.03 1.74 5.25 85.37 0.45 2.19 16 3 Si 0.98 42.22 29.57 68.60 2.03 44.25 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.46 -26.98 7.78 23.41 0.18 -26.79 16 8 H 0.09 5.37 5.73 -2.91 -0.02 5.36 16 9 C 0.12 6.64 5.48 -21.11 -0.12 6.52 16 10 C -0.17 -9.08 8.62 22.72 0.20 -8.88 16 11 C -0.09 -3.97 10.01 22.26 0.22 -3.75 16 12 C -0.23 -9.28 10.03 22.41 0.22 -9.06 16 13 C -0.05 -2.23 9.52 22.50 0.21 -2.02 16 14 C -0.28 -13.91 5.92 -19.70 -0.12 -14.03 16 15 C 0.57 26.95 7.70 86.66 0.67 27.62 16 16 O -0.57 -31.23 13.19 -4.07 -0.05 -31.29 16 17 N -0.71 -25.92 4.65 -445.03 -2.07 -27.99 16 18 C 0.12 3.76 2.53 45.15 0.11 3.87 16 19 H 0.09 3.34 7.57 -2.38 -0.02 3.32 16 20 C 0.06 1.91 6.69 72.12 0.48 2.39 16 21 O -0.33 -10.91 10.02 -91.83 -0.92 -11.83 16 22 C 0.12 3.30 6.38 22.52 0.14 3.44 16 23 C -0.17 -3.97 9.94 22.42 0.22 -3.75 16 24 C -0.07 -1.21 10.04 22.22 0.22 -0.98 16 25 C -0.15 -2.08 10.04 22.25 0.22 -1.86 16 26 C -0.07 -1.07 9.64 22.30 0.22 -0.86 16 27 C -0.21 -4.71 4.97 -19.75 -0.10 -4.80 16 28 C 0.16 3.66 3.05 29.89 0.09 3.76 16 29 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 30 O -0.56 -11.38 12.98 -148.98 -1.93 -13.32 16 31 H 0.29 14.16 8.29 -92.71 -0.77 13.39 16 32 H 0.10 5.37 6.72 -2.91 -0.02 5.35 16 33 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.12 4.13 6.42 -2.91 -0.02 4.11 16 36 H 0.40 12.98 6.35 -92.71 -0.59 12.39 16 37 H 0.09 2.59 7.87 -2.39 -0.02 2.57 16 38 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.40 4.13 9.05 -74.06 -0.67 3.46 16 Total: -1.00 -72.63 359.22 0.66 -71.97 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.18 Total: 39.57 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.54 Total: -26.98 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.82 Total: -72.38 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -2.91 Total: -56.43 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.63 0.66 -71.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434029231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.141 kcal (2) G-P(sol) polarization free energy of solvation -72.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds