Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86810 * 119.99924 * 2 1 4 4 H 1.48494 * 109.46746 * 269.99748 * 3 2 1 5 5 H 1.48497 * 109.47108 * 29.99862 * 3 2 1 6 6 H 1.48498 * 109.46812 * 149.99716 * 3 2 1 7 7 C 1.39943 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99730 * 195.40821 * 7 2 1 9 9 C 1.41388 * 120.00154 * 15.40659 * 7 2 1 10 10 C 1.40438 * 119.97016 * 25.72608 * 9 7 2 11 11 C 1.37594 * 119.54642 * 180.30688 * 10 9 7 12 12 C 1.38379 * 119.98877 * 0.17683 * 11 10 9 13 13 C 1.39244 * 121.05078 * 359.87124 * 12 11 10 14 14 C 1.37030 * 119.99967 * 359.65230 * 13 12 11 15 15 C 1.50573 * 123.05611 * 180.98770 * 14 13 12 16 16 C 1.52801 * 110.83677 * 340.10560 * 15 14 13 17 17 N 1.47240 * 107.83911 * 47.35232 * 16 15 14 18 18 C 1.34773 * 121.35554 * 115.88778 * 17 16 15 19 19 O 1.21622 * 119.99713 * 359.97438 * 18 17 16 20 20 C 1.47236 * 120.00566 * 180.02562 * 18 17 16 21 21 C 1.40251 * 120.23709 * 89.72068 * 20 18 17 22 22 O 1.35654 * 120.12142 * 359.97438 * 21 20 18 23 23 C 1.38548 * 119.75401 * 179.72564 * 21 20 18 24 24 C 1.38243 * 120.23955 * 0.55287 * 23 21 20 25 25 C 1.38253 * 120.48294 * 359.72359 * 24 23 21 26 26 C 1.38541 * 120.23284 * 359.97438 * 25 24 23 27 27 O 1.35666 * 120.11906 * 179.97438 * 26 25 24 28 28 C 1.46671 * 117.29429 * 295.86056 * 17 16 15 29 29 H 0.97007 * 120.00177 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.22612 * 0.29229 * 10 9 7 31 31 H 1.08001 * 120.00754 * 180.14592 * 11 10 9 32 32 H 1.08001 * 119.47388 * 179.84996 * 12 11 10 33 33 H 1.09000 * 109.19808 * 219.76863 * 15 14 13 34 34 H 1.08998 * 109.20223 * 100.43677 * 15 14 13 35 35 H 1.08997 * 109.78282 * 166.94190 * 16 15 14 36 36 H 1.09001 * 109.78069 * 287.77167 * 16 15 14 37 37 H 0.96701 * 114.00331 * 90.00108 * 22 21 20 38 38 H 1.08002 * 119.88311 * 180.27409 * 23 21 20 39 39 H 1.08000 * 119.76081 * 179.74276 * 24 23 21 40 40 H 1.07995 * 119.88083 * 179.97438 * 25 24 23 41 41 H 0.96698 * 113.99678 * 270.02291 * 27 26 25 42 42 H 1.08996 * 109.43196 * 164.36459 * 28 17 16 43 43 H 1.08999 * 109.43315 * 284.26901 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0589 -1.2286 0.2491 9 6 1.3391 -2.4146 -0.3242 10 6 0.1967 -2.3836 -1.1403 11 6 -0.4511 -3.5585 -1.4457 12 6 0.0221 -4.7592 -0.9464 13 6 1.1531 -4.8039 -0.1353 14 6 1.8203 -3.6478 0.1743 15 6 3.0615 -3.6188 1.0264 16 6 3.1754 -4.8915 1.8643 17 7 2.9300 -6.0398 0.9760 18 6 3.8912 -6.9508 0.7257 19 8 4.9883 -6.8334 1.2374 20 6 3.6136 -8.0875 -0.1679 21 6 3.8484 -7.9761 -1.5462 22 8 4.3324 -6.8190 -2.0629 23 6 3.5890 -9.0539 -2.3772 24 6 3.0898 -10.2321 -1.8539 25 6 2.8493 -10.3508 -0.4977 26 6 3.1074 -9.2876 0.3522 27 8 2.8700 -9.4065 1.6827 28 6 1.5968 -6.1524 0.3750 29 1 -0.4851 0.8401 -0.0004 30 1 -0.1712 -1.4440 -1.5255 31 1 -1.3290 -3.5437 -2.0746 32 1 -0.4942 -5.6762 -1.1893 33 1 3.0205 -2.7551 1.6901 34 1 3.9367 -3.5344 0.3822 35 1 4.1752 -4.9630 2.2924 36 1 2.4320 -4.8761 2.6614 37 1 5.2980 -6.7765 -2.0959 38 1 3.7733 -8.9719 -3.4382 39 1 2.8865 -11.0661 -2.5094 40 1 2.4588 -11.2756 -0.0994 41 1 1.9776 -9.1450 1.9478 42 1 1.6311 -6.8601 -0.4533 43 1 0.8896 -6.5061 1.1251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457970977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -69.841098 kcal Electronic energy + Delta-G solvation = -29536.731526 eV Core-core repulsion = 25511.809371 eV Total energy + Delta-G solvation = -4024.922154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78452 -39.15334 -37.99627 -37.84934 -35.89550 -35.46007 -33.67828 -32.25059 -30.74927 -30.03299 -29.55058 -28.71002 -25.41156 -25.02979 -23.91157 -22.73734 -22.52530 -20.61334 -20.31514 -19.15977 -18.34710 -17.64115 -17.12138 -16.92561 -16.52967 -16.02991 -15.47732 -15.32065 -14.92978 -14.78945 -14.64815 -14.34823 -13.77634 -13.42435 -13.40516 -13.23174 -13.01486 -12.52559 -12.49333 -12.34549 -11.95390 -11.78967 -11.58752 -11.40135 -11.22871 -11.15540 -11.02582 -10.85644 -10.84014 -10.48289 -10.21320 -9.82312 -9.63253 -9.30575 -9.19255 -8.97578 -8.81611 -8.28119 -7.32850 -7.27955 -6.77363 -4.39786 0.81752 0.92974 2.71414 2.76644 2.87538 3.05660 3.08998 3.13420 3.18407 3.35669 3.72344 3.90682 4.23713 4.50701 4.56935 4.73943 4.91703 5.09605 5.36141 5.40481 5.49282 5.52369 5.68130 5.80589 5.84678 5.88536 5.96170 6.00188 6.02722 6.11404 6.29151 6.33982 6.37400 6.46642 6.71530 6.85820 6.87397 7.05546 7.19998 7.32578 7.37682 7.52742 7.56756 7.65309 7.86308 8.01131 8.03805 8.23547 8.34422 8.59592 8.85399 8.93198 10.16006 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.003366 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.100728 B = 8315.434329 C = 8699.013670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.112 3.888 10 C -0.163 4.163 11 C -0.103 4.103 12 C -0.234 4.234 13 C -0.075 4.075 14 C -0.170 4.170 15 C -0.068 4.068 16 C 0.113 3.887 17 N -0.591 5.591 18 C 0.578 3.422 19 O -0.543 6.543 20 C -0.172 4.172 21 C 0.161 3.839 22 O -0.484 6.484 23 C -0.156 4.156 24 C -0.076 4.076 25 C -0.157 4.157 26 C 0.153 3.847 27 O -0.489 6.489 28 C 0.160 3.840 29 H 0.280 0.720 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.394 0.606 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -15.148 -2.035 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.098 0.902 9 C 0.109 3.891 10 C -0.182 4.182 11 C -0.122 4.122 12 C -0.254 4.254 13 C -0.075 4.075 14 C -0.172 4.172 15 C -0.105 4.105 16 C -0.009 4.009 17 N -0.321 5.321 18 C 0.365 3.635 19 O -0.421 6.421 20 C -0.176 4.176 21 C 0.115 3.885 22 O -0.295 6.295 23 C -0.174 4.174 24 C -0.094 4.094 25 C -0.176 4.176 26 C 0.107 3.893 27 O -0.300 6.300 28 C 0.037 3.963 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.251 0.749 42 H 0.096 0.904 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.954 -14.942 -1.753 15.332 hybrid contribution 0.062 0.938 -0.088 0.944 sum 3.016 -14.004 -1.841 14.443 Atomic orbital electron populations 1.69816 1.07529 1.29120 1.35485 1.25896 0.94725 1.01241 0.92278 0.86333 0.80526 0.80695 0.79330 1.19328 1.20337 1.18561 1.19607 0.97338 0.90809 1.41113 0.90233 1.17601 0.91423 0.91332 0.88730 1.21271 0.98990 0.96778 1.01178 1.20570 0.98559 0.93325 0.99743 1.20129 1.00598 0.96510 1.08144 1.18976 0.96734 0.92172 0.99648 1.19212 0.99768 0.92885 1.05322 1.20419 0.96531 0.95983 0.97589 1.21760 1.02038 0.84882 0.92193 1.48004 1.12609 1.24909 1.46624 1.17684 0.84096 0.81417 0.80271 1.90770 1.22958 1.76307 1.52106 1.20700 1.07446 0.95405 0.94039 1.18276 0.96214 0.85721 0.88323 1.84831 1.26848 1.34349 1.83432 1.21421 1.03067 0.92231 1.00719 1.20986 0.96523 0.97288 0.94634 1.21351 1.03570 0.99327 0.93349 1.18208 0.96676 0.91031 0.83401 1.84782 1.37305 1.88663 1.19257 1.20426 0.82121 0.97126 0.96626 0.90921 0.86338 0.89382 0.89655 0.90098 0.92592 0.89560 0.91208 0.74606 0.84483 0.84739 0.84608 0.74869 0.90438 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.04 10.88 55.55 0.60 -19.44 16 2 C 0.08 1.86 5.17 -17.34 -0.09 1.77 16 3 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.73 8.04 -37.75 -0.30 -12.04 16 8 H 0.08 1.97 6.84 -52.48 -0.36 1.61 16 9 C 0.11 2.87 5.58 -106.65 -0.60 2.28 16 10 C -0.16 -4.15 8.66 -38.99 -0.34 -4.48 16 11 C -0.10 -2.37 10.03 -39.76 -0.40 -2.77 16 12 C -0.23 -5.03 9.62 -39.16 -0.38 -5.41 16 13 C -0.07 -1.60 5.81 -104.61 -0.61 -2.20 16 14 C -0.17 -3.97 5.82 -103.90 -0.60 -4.58 16 15 C -0.07 -1.40 4.94 -28.05 -0.14 -1.54 16 16 C 0.11 2.04 6.44 -3.74 -0.02 2.02 16 17 N -0.59 -10.51 2.93 -175.70 -0.52 -11.03 16 18 C 0.58 10.43 6.22 -12.61 -0.08 10.35 16 19 O -0.54 -11.37 16.59 5.26 0.09 -11.28 16 20 C -0.17 -2.58 3.82 -104.73 -0.40 -2.98 16 21 C 0.16 2.20 6.46 -38.71 -0.25 1.95 16 22 O -0.48 -6.98 12.95 -18.66 -0.24 -7.22 16 23 C -0.16 -1.65 9.97 -39.47 -0.39 -2.04 16 24 C -0.08 -0.68 10.02 -39.57 -0.40 -1.08 16 25 C -0.16 -1.55 9.97 -39.46 -0.39 -1.95 16 26 C 0.15 1.94 6.72 -38.71 -0.26 1.68 16 27 O -0.49 -5.94 12.95 -18.70 -0.24 -6.18 16 28 C 0.16 2.76 6.07 -5.02 -0.03 2.73 16 29 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 30 H 0.12 3.13 6.15 -52.48 -0.32 2.81 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.09 1.61 8.05 -52.49 -0.42 1.19 16 33 H 0.08 1.68 7.04 -51.93 -0.37 1.31 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.54 7.07 -51.93 -0.37 1.17 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.40 4.07 9.06 45.56 0.41 4.48 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.39 3.10 9.06 45.56 0.41 3.52 16 42 H 0.08 1.28 6.36 -51.93 -0.33 0.95 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -32.33 361.18 -9.01 -41.34 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -3.44 Total: 13.27 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -5.68 Total: -18.29 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.09 Total: -30.46 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.40 Total: -24.68 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.33 -9.01 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457970977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.498 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds