Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00164 * 2 1 4 4 O 1.21606 * 119.99855 * 176.34605 * 3 2 1 5 5 C 1.47442 * 120.00125 * 356.62262 * 3 2 1 6 6 C 1.37981 * 124.15865 * 185.98691 * 5 3 2 7 7 S 1.72101 * 104.03602 * 179.97438 * 6 5 3 8 8 N 1.56401 * 96.15272 * 0.29648 * 7 6 5 9 9 N 1.27414 * 109.87870 * 359.81942 * 8 7 6 10 10 C 1.46507 * 119.99842 * 179.97438 * 2 1 3 11 11 C 1.53778 * 113.61324 * 31.22991 * 10 2 1 12 12 C 1.54046 * 86.98881 * 270.83883 * 11 10 2 13 13 N 1.46899 * 113.69559 * 220.00988 * 12 11 10 14 14 C 1.46897 * 111.00116 * 252.53271 * 13 12 11 15 15 C 1.50705 * 109.47234 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99644 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99912 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99822 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99676 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00098 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47262 * 89.99836 * 22 20 18 24 24 H 1.48497 * 109.46962 * 209.99844 * 22 20 18 25 25 H 1.48504 * 109.46944 * 329.99694 * 22 20 18 26 26 C 1.53779 * 113.61271 * 293.62493 * 10 2 1 27 27 H 1.08999 * 109.46946 * 35.97512 * 1 2 3 28 28 H 1.09008 * 109.47159 * 155.97051 * 1 2 3 29 29 H 1.09001 * 109.47620 * 275.97019 * 1 2 3 30 30 H 1.07999 * 127.98112 * 0.02562 * 6 5 3 31 31 H 1.09000 * 112.85008 * 162.43411 * 10 2 1 32 32 H 1.09000 * 113.61337 * 25.44256 * 11 10 2 33 33 H 1.09000 * 113.60988 * 156.33191 * 11 10 2 34 34 H 1.08999 * 113.61126 * 89.11975 * 12 11 10 35 35 H 1.00901 * 110.99831 * 128.57632 * 13 12 11 36 36 H 1.08997 * 109.47235 * 300.00425 * 14 13 12 37 37 H 1.09003 * 109.47004 * 60.00359 * 14 13 12 38 38 H 0.97001 * 120.00057 * 0.02562 * 17 15 14 39 39 H 0.97002 * 120.00527 * 179.97438 * 21 20 18 40 40 H 1.08999 * 113.61484 * 203.66509 * 26 10 2 41 41 H 1.08998 * 113.61826 * 334.57021 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3530 1.1682 0.0671 5 6 1.4036 2.4430 -0.0752 6 6 2.0059 3.6781 -0.2002 7 16 0.6874 4.7835 -0.2391 8 7 -0.4382 3.7067 -0.0985 9 7 0.0802 2.5452 -0.0244 10 6 2.1974 -1.2688 0.0006 11 6 1.4620 -2.4050 -0.7295 12 6 0.7930 -2.7293 0.6197 13 7 0.6666 -4.1686 0.8851 14 6 -0.7299 -4.6065 0.7593 15 6 -0.8198 -6.0850 1.0374 16 8 0.1810 -6.7120 1.3136 17 7 -2.0123 -6.7103 0.9791 18 6 -2.0941 -8.0552 1.2325 19 1 -1.2030 -8.6133 1.4793 20 6 -3.3233 -8.7000 1.1719 21 7 -4.4076 -8.0208 0.8721 22 14 -3.4350 -10.5323 1.5179 23 1 -3.6727 -10.7488 2.9676 24 1 -4.5573 -11.1155 0.7398 25 1 -2.1636 -11.1894 1.1212 26 6 2.0164 -2.0840 1.2919 27 1 -0.3633 0.8317 -0.6037 28 1 -0.3634 -0.9387 -0.4185 29 1 -0.3634 0.1069 1.0221 30 1 3.0612 3.8998 -0.2606 31 1 3.2384 -1.1567 -0.3026 32 1 0.7651 -2.0554 -1.4912 33 1 2.1236 -3.1929 -1.0894 34 1 -0.1359 -2.1847 0.7885 35 1 1.0387 -4.4028 1.7933 36 1 -1.3468 -4.0636 1.4754 37 1 -1.0842 -4.4051 -0.2517 38 1 -2.8126 -6.2089 0.7578 39 1 -5.2658 -8.4710 0.8294 40 1 2.8293 -2.7844 1.4837 41 1 1.7667 -1.4755 2.1610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486472793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = 53.907610 kcal Electronic energy + Delta-G solvation = -26090.510240 eV Core-core repulsion = 22135.150591 eV Total energy + Delta-G solvation = -3955.359649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73016 -40.41821 -38.70230 -37.99578 -35.16259 -33.97837 -33.08492 -32.33167 -31.18329 -28.07476 -27.41877 -26.86581 -25.68641 -24.95946 -23.89809 -22.17201 -21.07334 -19.97573 -19.23127 -18.60985 -17.86147 -16.99514 -16.87612 -16.60529 -16.03195 -15.95196 -15.41216 -15.16513 -15.09558 -14.57102 -14.39324 -13.96480 -13.69141 -13.44816 -13.39115 -13.18859 -12.62760 -12.52274 -12.32680 -12.06775 -12.02065 -11.88743 -11.55410 -11.35437 -11.03924 -10.76595 -10.60074 -10.56514 -10.55444 -10.43869 -10.38504 -10.27967 -10.20170 -9.50143 -8.94835 -8.43455 -8.05976 -7.94906 -6.40831 -3.81650 -0.45281 0.40386 0.95780 1.02277 2.51284 2.67237 3.18532 3.27134 3.32370 3.33283 3.91996 4.12254 4.13053 4.23177 4.37867 4.42050 4.50568 4.71431 4.78334 4.95893 4.98977 5.21126 5.27464 5.38412 5.42567 5.67571 5.71373 5.74296 5.77640 5.84414 5.87241 6.00176 6.08062 6.26081 6.40709 6.87964 7.02549 7.27849 7.56095 7.64716 7.66924 8.07386 8.62251 9.18825 9.55381 10.06849 10.76894 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.001841 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.990425 B =15205.363314 C =16131.627977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.575 5.575 3 C 0.603 3.397 4 O -0.526 6.526 5 C -0.020 4.020 6 C -0.237 4.237 7 S 0.465 5.535 8 N -0.293 5.293 9 N -0.206 5.206 10 C 0.116 3.884 11 C -0.132 4.132 12 C 0.053 3.947 13 N -0.655 5.655 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.150 4.150 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.351 0.649 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.103 0.897 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.148 28.606 -3.509 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.306 5.306 3 C 0.386 3.614 4 O -0.401 6.401 5 C -0.167 4.167 6 C -0.394 4.394 7 S 0.601 5.399 8 N -0.273 5.273 9 N -0.076 5.076 10 C 0.013 3.987 11 C -0.171 4.171 12 C -0.058 4.058 13 N -0.288 5.288 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.189 4.189 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.226 0.774 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.172 0.828 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.684 28.728 -3.929 30.268 hybrid contribution 0.010 -1.179 0.896 1.480 sum 8.694 27.550 -3.034 29.048 Atomic orbital electron populations 1.22537 0.77982 1.04607 1.03347 1.47394 1.07839 1.04678 1.70648 1.16688 0.85979 0.81380 0.77377 1.90841 1.12413 1.86401 1.50462 1.22680 0.89424 0.96612 1.07975 1.28902 1.09443 0.96018 1.05056 1.81590 0.90217 1.18785 1.49288 1.78723 1.26561 1.00008 1.22012 1.71886 1.09295 1.12962 1.13475 1.21952 0.97107 0.81634 0.98054 1.23536 0.99918 0.96611 0.97018 1.23384 0.96988 0.88805 0.96602 1.60194 1.18188 1.12408 1.38007 1.21738 0.89581 0.95397 1.01607 1.19828 0.84432 0.88411 0.84722 1.90521 1.35582 1.67132 1.53521 1.41870 1.07564 1.09461 1.61186 1.19702 0.95203 0.83853 1.44086 0.87928 1.25266 0.94846 1.00526 0.97371 1.69614 0.99021 1.36940 1.48772 0.85854 0.78012 0.82103 0.78299 1.20445 1.20931 1.19402 1.23637 0.99293 0.98882 0.97078 0.88184 0.89874 0.92017 0.77423 0.87143 0.91022 0.87450 0.90493 0.82836 0.93901 0.89659 0.77467 0.91887 0.87902 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 7.99 59.84 0.48 1.02 16 2 N -0.58 -6.02 3.08 -174.26 -0.54 -6.55 16 3 C 0.60 6.80 7.66 -12.51 -0.10 6.70 16 4 O -0.53 -7.11 16.36 5.27 0.09 -7.02 16 5 C -0.02 -0.19 6.64 -83.78 -0.56 -0.74 16 6 C -0.24 -1.46 11.21 30.64 0.34 -1.11 16 7 S 0.47 2.15 23.38 -107.50 -2.51 -0.36 16 8 N -0.29 -2.50 12.49 60.35 0.75 -1.75 16 9 N -0.21 -1.98 7.92 32.74 0.26 -1.72 16 10 C 0.12 1.24 4.37 -67.12 -0.29 0.94 16 11 C -0.13 -1.44 7.09 -25.78 -0.18 -1.62 16 12 C 0.05 0.63 3.49 -66.76 -0.23 0.40 16 13 N -0.66 -10.34 6.19 -106.98 -0.66 -11.01 16 14 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 15 C 0.44 10.42 7.82 -10.98 -0.09 10.33 16 16 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 17 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 18 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.15 -1.62 7.39 -25.92 -0.19 -1.81 16 27 H 0.10 0.93 5.26 -51.93 -0.27 0.66 16 28 H 0.08 0.73 4.66 -51.92 -0.24 0.49 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.11 1.23 7.37 -51.93 -0.38 0.84 16 32 H 0.07 0.74 7.06 -51.93 -0.37 0.37 16 33 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 0.87 5.50 -51.93 -0.29 0.58 16 35 H 0.35 5.77 8.25 -39.29 -0.32 5.45 16 36 H 0.04 0.68 8.13 -51.93 -0.42 0.25 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -33.84 357.61 -7.25 -41.08 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -4.67 Total: 13.03 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.09 Total: 6.88 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.48 Total: -59.34 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.51 Total: -0.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.84 -7.25 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486472793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.992 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds