Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00164 * 2 1 4 4 O 1.21606 * 119.99855 * 176.34605 * 3 2 1 5 5 C 1.47442 * 120.00125 * 356.62262 * 3 2 1 6 6 C 1.37981 * 124.15865 * 185.98691 * 5 3 2 7 7 S 1.72101 * 104.03602 * 179.97438 * 6 5 3 8 8 N 1.56401 * 96.15272 * 0.29648 * 7 6 5 9 9 N 1.27414 * 109.87870 * 359.81942 * 8 7 6 10 10 C 1.46507 * 119.99842 * 179.97438 * 2 1 3 11 11 C 1.53778 * 113.61324 * 31.22991 * 10 2 1 12 12 C 1.54046 * 86.98881 * 270.83883 * 11 10 2 13 13 N 1.46899 * 113.69559 * 220.00988 * 12 11 10 14 14 C 1.46897 * 111.00116 * 252.53271 * 13 12 11 15 15 C 1.50705 * 109.47234 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99644 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99912 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99822 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99676 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00098 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47262 * 89.99836 * 22 20 18 24 24 H 1.48497 * 109.46962 * 209.99844 * 22 20 18 25 25 H 1.48504 * 109.46944 * 329.99694 * 22 20 18 26 26 C 1.53779 * 113.61271 * 293.62493 * 10 2 1 27 27 H 1.08999 * 109.46946 * 35.97512 * 1 2 3 28 28 H 1.09008 * 109.47159 * 155.97051 * 1 2 3 29 29 H 1.09001 * 109.47620 * 275.97019 * 1 2 3 30 30 H 1.07999 * 127.98112 * 0.02562 * 6 5 3 31 31 H 1.09000 * 112.85008 * 162.43411 * 10 2 1 32 32 H 1.09000 * 113.61337 * 25.44256 * 11 10 2 33 33 H 1.09000 * 113.60988 * 156.33191 * 11 10 2 34 34 H 1.08999 * 113.61126 * 89.11975 * 12 11 10 35 35 H 1.00901 * 110.99831 * 128.57632 * 13 12 11 36 36 H 1.08997 * 109.47235 * 300.00425 * 14 13 12 37 37 H 1.09003 * 109.47004 * 60.00359 * 14 13 12 38 38 H 0.97001 * 120.00057 * 0.02562 * 17 15 14 39 39 H 0.97002 * 120.00527 * 179.97438 * 21 20 18 40 40 H 1.08999 * 113.61484 * 203.66509 * 26 10 2 41 41 H 1.08998 * 113.61826 * 334.57021 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3530 1.1682 0.0671 5 6 1.4036 2.4430 -0.0752 6 6 2.0059 3.6781 -0.2002 7 16 0.6874 4.7835 -0.2391 8 7 -0.4382 3.7067 -0.0985 9 7 0.0802 2.5452 -0.0244 10 6 2.1974 -1.2688 0.0006 11 6 1.4620 -2.4050 -0.7295 12 6 0.7930 -2.7293 0.6197 13 7 0.6666 -4.1686 0.8851 14 6 -0.7299 -4.6065 0.7593 15 6 -0.8198 -6.0850 1.0374 16 8 0.1810 -6.7120 1.3136 17 7 -2.0123 -6.7103 0.9791 18 6 -2.0941 -8.0552 1.2325 19 1 -1.2030 -8.6133 1.4793 20 6 -3.3233 -8.7000 1.1719 21 7 -4.4076 -8.0208 0.8721 22 14 -3.4350 -10.5323 1.5179 23 1 -3.6727 -10.7488 2.9676 24 1 -4.5573 -11.1155 0.7398 25 1 -2.1636 -11.1894 1.1212 26 6 2.0164 -2.0840 1.2919 27 1 -0.3633 0.8317 -0.6037 28 1 -0.3634 -0.9387 -0.4185 29 1 -0.3634 0.1069 1.0221 30 1 3.0612 3.8998 -0.2606 31 1 3.2384 -1.1567 -0.3026 32 1 0.7651 -2.0554 -1.4912 33 1 2.1236 -3.1929 -1.0894 34 1 -0.1359 -2.1847 0.7885 35 1 1.0387 -4.4028 1.7933 36 1 -1.3468 -4.0636 1.4754 37 1 -1.0842 -4.4051 -0.2517 38 1 -2.8126 -6.2089 0.7578 39 1 -5.2658 -8.4710 0.8294 40 1 2.8293 -2.7844 1.4837 41 1 1.7667 -1.4755 2.1610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486472793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = 27.492757 kcal Electronic energy + Delta-G solvation = -26091.655674 eV Core-core repulsion = 22135.150591 eV Total energy + Delta-G solvation = -3956.505083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39120 -41.23546 -40.12469 -39.35518 -36.32263 -35.80773 -34.22556 -33.24383 -32.98141 -28.96968 -28.21385 -28.07457 -26.69656 -26.20583 -25.21208 -23.07205 -21.74336 -21.16904 -20.61797 -19.90312 -19.43214 -18.00672 -17.64230 -17.40189 -17.24388 -16.82622 -16.62942 -16.37221 -16.19071 -16.00851 -15.62135 -15.55627 -15.04693 -14.56154 -14.23210 -14.13434 -13.91314 -13.52721 -13.33816 -13.22312 -13.07570 -13.00889 -12.86922 -12.80851 -12.49054 -12.40809 -12.12073 -11.72872 -11.50328 -11.42777 -11.30269 -11.17118 -11.08156 -10.85084 -10.31853 -10.01123 -9.78355 -9.30798 -8.46319 -5.95032 -0.94479 -0.05089 0.28028 0.53362 1.38195 1.41976 1.54827 1.75500 1.90648 2.05895 2.29520 2.69069 2.96013 3.20991 3.40741 3.49686 3.60038 3.64496 3.68853 3.87622 4.09243 4.22008 4.29176 4.32632 4.48080 4.53967 4.59748 4.67247 4.82469 4.84618 4.91002 4.99333 5.05690 5.18184 5.41276 5.51130 5.93227 6.10447 6.15630 6.40279 6.41883 6.60677 6.84738 7.13040 7.56902 8.12223 8.71007 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.001841 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.990425 B =15205.363314 C =16131.627977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.575 5.575 3 C 0.600 3.400 4 O -0.556 6.556 5 C -0.046 4.046 6 C -0.237 4.237 7 S 0.564 5.436 8 N -0.336 5.336 9 N -0.225 5.225 10 C 0.122 3.878 11 C -0.125 4.125 12 C 0.053 3.947 13 N -0.668 5.668 14 C 0.065 3.935 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.143 4.143 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.345 0.655 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.101 0.899 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 30.427 -3.818 31.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.305 5.305 3 C 0.384 3.616 4 O -0.435 6.435 5 C -0.193 4.193 6 C -0.394 4.394 7 S 0.699 5.301 8 N -0.316 5.316 9 N -0.094 5.094 10 C 0.017 3.983 11 C -0.164 4.164 12 C -0.056 4.056 13 N -0.300 5.300 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.182 4.182 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.244 0.756 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.145 30.576 -4.249 31.926 hybrid contribution 0.218 -1.551 0.975 1.845 sum 8.363 29.025 -3.274 30.383 Atomic orbital electron populations 1.22558 0.77146 1.04924 1.03465 1.47458 1.08312 1.04475 1.70244 1.16971 0.85790 0.82152 0.76642 1.90813 1.13623 1.86979 1.52041 1.22508 0.89858 0.96621 1.10337 1.29274 1.11126 0.95717 1.03247 1.81232 0.87374 1.15502 1.45946 1.78397 1.28869 1.00774 1.23559 1.71907 1.09385 1.13836 1.14291 1.21831 0.96920 0.81787 0.97730 1.23461 0.99808 0.96378 0.96759 1.23502 0.98011 0.86672 0.97448 1.60210 1.17053 1.14945 1.37822 1.21604 0.91234 0.90775 1.03174 1.20916 0.83149 0.90833 0.82614 1.90490 1.36792 1.68892 1.54843 1.41940 1.08421 1.08913 1.61800 1.19661 0.95019 0.85328 1.46306 0.90357 1.26045 0.94139 1.04637 0.96550 1.69672 0.99392 1.38484 1.48548 0.84927 0.77982 0.76901 0.78519 1.19624 1.19528 1.19832 1.23583 0.98712 0.98684 0.97231 0.88046 0.89338 0.91980 0.75559 0.87721 0.90045 0.88202 0.89161 0.83491 0.91555 0.87824 0.76949 0.91301 0.88035 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 7.99 127.77 1.02 2.09 16 2 N -0.58 -11.65 3.08 -823.50 -2.53 -14.18 16 3 C 0.60 13.29 7.66 86.67 0.66 13.95 16 4 O -0.56 -14.99 16.36 -4.05 -0.07 -15.06 16 5 C -0.05 -0.81 6.64 41.36 0.27 -0.53 16 6 C -0.24 -2.45 11.21 67.76 0.76 -1.69 16 7 S 0.56 3.76 23.38 -56.49 -1.32 2.44 16 8 N -0.34 -5.22 12.49 37.02 0.46 -4.76 16 9 N -0.22 -4.11 7.92 -50.34 -0.40 -4.50 16 10 C 0.12 2.51 4.37 45.51 0.20 2.71 16 11 C -0.13 -2.60 7.09 31.21 0.22 -2.38 16 12 C 0.05 1.20 3.49 45.53 0.16 1.36 16 13 N -0.67 -20.55 6.19 -492.39 -3.05 -23.59 16 14 C 0.06 2.18 6.01 85.56 0.51 2.69 16 15 C 0.44 20.83 7.82 87.66 0.69 21.52 16 16 O -0.62 -34.74 15.78 -3.05 -0.05 -34.79 16 17 N -0.57 -29.53 5.29 -306.99 -1.62 -31.15 16 18 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 21 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 22 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.14 -3.00 7.39 31.12 0.23 -2.77 16 27 H 0.10 1.82 5.26 -2.39 -0.01 1.80 16 28 H 0.09 1.41 4.66 -2.38 -0.01 1.40 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.10 2.32 7.37 -2.39 -0.02 2.30 16 32 H 0.08 1.54 7.06 -2.39 -0.02 1.52 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 1.84 5.50 -2.39 -0.01 1.83 16 35 H 0.35 11.28 8.25 -89.69 -0.74 10.54 16 36 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.14 16 38 H 0.40 19.33 7.90 -92.71 -0.73 18.59 16 39 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -73.96 357.61 -0.61 -74.57 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.35 Total: 36.91 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 6.01 Total: 18.40 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -6.86 Total: -127.68 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.11 Total: -49.85 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.32 Total: 2.44 kcal Total: -73.96 -0.61 -74.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486472793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.063 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds