Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00065 * 2 1 4 4 C 1.53004 * 109.47442 * 270.00284 * 3 2 1 5 5 H 1.09003 * 112.74531 * 75.76872 * 4 3 2 6 6 C 1.53515 * 113.47716 * 206.61884 * 4 3 2 7 7 C 1.53512 * 83.57232 * 140.79144 * 6 4 3 8 8 N 1.47474 * 87.93408 * 333.97275 * 7 6 4 9 9 C 1.46900 * 111.00209 * 138.70422 * 8 7 6 10 10 C 1.50706 * 109.46934 * 74.03015 * 9 8 7 11 11 O 1.21283 * 119.99837 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.37106 * 120.00105 * 179.97438 * 12 10 9 14 14 H 1.08007 * 119.99684 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00512 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99716 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00262 * 179.72652 * 15 13 12 18 18 H 1.48497 * 109.47436 * 180.27164 * 17 15 13 19 19 H 1.48496 * 109.47270 * 300.27239 * 17 15 13 20 20 H 1.48509 * 109.47207 * 60.27024 * 17 15 13 21 21 C 1.34777 * 120.00252 * 180.02562 * 2 1 3 22 22 O 1.21605 * 120.00297 * 176.37485 * 21 2 1 23 23 C 1.47450 * 120.00028 * 356.37786 * 21 2 1 24 24 C 1.37980 * 124.15694 * 186.09575 * 23 21 2 25 25 S 1.72103 * 104.03115 * 179.97438 * 24 23 21 26 26 N 1.56400 * 96.15889 * 359.97438 * 25 24 23 27 27 N 1.27422 * 109.87308 * 359.74930 * 26 25 24 28 28 H 1.09002 * 109.47217 * 95.80510 * 1 2 3 29 29 H 1.09004 * 109.46445 * 215.80128 * 1 2 3 30 30 H 1.08994 * 109.47160 * 335.79856 * 1 2 3 31 31 H 1.09006 * 109.47349 * 150.00534 * 3 2 1 32 32 H 1.08998 * 109.47146 * 30.00280 * 3 2 1 33 33 H 1.08994 * 114.16759 * 254.43588 * 6 4 3 34 34 H 1.08992 * 114.17098 * 26.94989 * 6 4 3 35 35 H 1.09010 * 113.47397 * 219.20974 * 7 6 4 36 36 H 1.09000 * 113.48172 * 88.74120 * 7 6 4 37 37 H 1.09007 * 109.47428 * 314.03484 * 9 8 7 38 38 H 1.08995 * 109.47812 * 194.03125 * 9 8 7 39 39 H 0.96997 * 120.00634 * 0.02562 * 12 10 9 40 40 H 0.97007 * 120.00016 * 359.73454 * 16 15 13 41 41 H 1.07994 * 127.98353 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5624 2.1176 -1.9222 6 6 3.6942 2.5994 -1.5995 7 6 3.8976 1.7909 -2.8884 8 7 3.1443 0.6926 -2.2551 9 6 2.2218 0.0667 -3.2118 10 6 3.0035 -0.7808 -4.1823 11 8 4.2101 -0.8563 -4.0862 12 7 2.3616 -1.4548 -5.1571 13 6 3.0727 -2.2254 -6.0404 14 1 4.1473 -2.2920 -5.9553 15 6 2.4111 -2.9198 -7.0457 16 7 1.1036 -2.8383 -7.1496 17 14 3.3807 -3.9636 -8.2538 18 1 2.4489 -4.5912 -9.2249 19 1 4.3504 -3.1063 -8.9816 20 1 4.1138 -5.0232 -7.5154 21 6 2.1389 -1.1672 -0.0005 22 8 3.3532 -1.1682 -0.0671 23 6 1.4040 -2.4429 0.0796 24 6 2.0067 -3.6776 0.2066 25 16 0.6883 -4.7830 0.2511 26 7 -0.4381 -3.7060 0.1186 27 7 0.0799 -2.5442 0.0451 28 1 -0.3634 -0.1039 -1.0224 29 1 -0.3632 -0.8336 0.6012 30 1 -0.3633 0.9373 0.4213 31 1 3.1500 1.1383 0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.4705 3.6533 -1.7643 34 1 4.4592 2.4354 -0.8407 35 1 4.9409 1.5443 -3.0863 36 1 3.3938 2.2201 -3.7545 37 1 1.6836 0.8416 -3.7578 38 1 1.5102 -0.5596 -2.6739 39 1 1.3966 -1.3941 -5.2343 40 1 0.6000 -2.2965 -6.5220 41 1 3.0621 -3.8992 0.2646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488644338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = 70.351956 kcal Electronic energy + Delta-G solvation = -28126.449786 eV Core-core repulsion = 24171.803218 eV Total energy + Delta-G solvation = -3954.646568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27580 -40.32731 -38.85522 -37.78153 -35.47295 -34.21963 -32.27608 -31.26936 -30.54631 -29.13540 -27.07027 -26.62101 -25.54488 -24.14793 -23.58519 -22.26206 -20.55334 -19.65966 -19.48100 -18.63639 -17.86156 -16.69610 -16.38255 -16.32513 -16.10786 -15.68820 -15.52622 -15.44252 -14.36001 -14.35110 -14.04304 -13.86951 -13.68772 -13.31663 -13.15516 -12.93479 -12.74532 -12.33671 -12.17930 -12.04013 -11.67639 -11.61544 -11.32163 -11.16874 -10.94178 -10.78150 -10.44623 -10.20748 -10.19372 -10.13361 -10.01980 -9.95081 -9.82798 -9.49588 -8.83206 -8.40224 -8.19759 -7.98769 -6.71844 -3.84364 -0.02343 0.82400 1.41483 1.42656 2.90257 3.23139 3.32758 3.35497 3.56160 3.74317 3.89343 4.07886 4.32934 4.53557 4.58834 4.69008 4.83964 4.96122 5.09922 5.15612 5.20338 5.25996 5.29729 5.45360 5.50645 5.62706 5.64878 5.75954 5.81685 5.86552 5.94515 6.05868 6.15633 6.32688 6.49277 6.71027 7.21719 7.32361 7.42847 7.84408 8.11511 8.18213 8.64556 8.85593 9.52035 9.94401 10.71534 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008593 B = 0.004780 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.606006 B = 5856.026572 C = 8214.328427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.601 5.601 3 C 0.139 3.861 4 C 0.000 4.000 5 H 0.074 0.926 6 C -0.136 4.136 7 C 0.010 3.990 8 N -0.416 5.416 9 C 0.014 3.986 10 C 0.450 3.550 11 O -0.566 6.566 12 N -0.580 5.580 13 C -0.379 4.379 14 H 0.098 0.902 15 C -0.011 4.011 16 N -0.903 5.903 17 Si 1.091 2.909 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.599 3.401 22 O -0.485 6.485 23 C -0.019 4.019 24 C -0.233 4.233 25 S 0.461 5.539 26 N -0.298 5.298 27 N -0.211 5.211 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.373 0.627 40 H 0.260 0.740 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 4.532 18.183 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.016 3.984 4 C -0.111 4.111 5 H 0.092 0.908 6 C -0.174 4.174 7 C -0.119 4.119 8 N -0.138 5.138 9 C -0.118 4.118 10 C 0.236 3.764 11 O -0.448 6.448 12 N -0.219 5.219 13 C -0.508 4.508 14 H 0.116 0.884 15 C -0.213 4.213 16 N -0.543 5.543 17 Si 0.917 3.083 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.381 3.619 22 O -0.356 6.356 23 C -0.165 4.165 24 C -0.390 4.390 25 S 0.597 5.403 26 N -0.278 5.278 27 N -0.082 5.082 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.206 0.794 40 H 0.071 0.929 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.127 2.031 17.175 17.780 hybrid contribution 0.038 2.570 0.533 2.625 sum -4.089 4.601 17.708 18.747 Atomic orbital electron populations 1.22286 0.78587 1.03482 1.02963 1.47455 1.07297 1.05287 1.73353 1.21527 0.97734 0.83677 0.95452 1.23947 0.96996 0.93842 0.96356 0.90773 1.23173 0.97326 0.97707 0.99189 1.23583 1.01998 0.91079 0.95210 1.68946 1.14355 1.16837 1.13665 1.22438 0.95742 0.98703 0.94923 1.19598 0.88539 0.84723 0.83586 1.90530 1.13979 1.66378 1.73880 1.41947 1.08638 1.43440 1.27905 1.20512 0.94816 1.25660 1.09856 0.88446 1.26487 0.96982 0.98893 0.98949 1.70900 1.06056 1.39432 1.37877 0.83141 0.74337 0.75634 0.75198 1.20405 1.21035 1.21047 1.16602 0.86222 0.81190 0.77884 1.90916 1.11976 1.85740 1.46931 1.22803 0.89278 0.97019 1.07435 1.28888 1.09381 0.96001 1.04684 1.81481 0.90395 1.18919 1.49492 1.78644 1.26684 1.00061 1.22433 1.71790 1.09478 1.13066 1.13823 0.92726 0.88196 0.91557 0.89136 0.90112 0.90901 0.88728 0.89141 0.92121 0.93375 0.90273 0.79418 0.92904 0.77497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.61 59.85 0.58 1.33 16 2 N -0.60 -7.86 2.74 -182.84 -0.50 -8.36 16 3 C 0.14 1.60 5.60 -4.04 -0.02 1.58 16 4 C 0.00 0.00 3.37 -71.44 -0.24 -0.24 16 5 H 0.07 0.89 7.77 -51.93 -0.40 0.48 16 6 C -0.14 -1.61 8.00 -26.20 -0.21 -1.82 16 7 C 0.01 0.17 6.71 -7.56 -0.05 0.12 16 8 N -0.42 -7.49 4.50 -237.95 -1.07 -8.56 16 9 C 0.01 0.28 5.31 -4.97 -0.03 0.25 16 10 C 0.45 11.46 7.62 -10.98 -0.08 11.38 16 11 O -0.57 -16.45 15.34 5.55 0.09 -16.37 16 12 N -0.58 -15.49 5.28 -10.96 -0.06 -15.55 16 13 C -0.38 -11.09 9.68 -14.93 -0.14 -11.23 16 14 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 15 C -0.01 -0.31 5.50 -17.47 -0.10 -0.41 16 16 N -0.90 -26.08 13.68 55.50 0.76 -25.32 16 17 Si 1.09 24.99 29.92 -169.99 -5.09 19.90 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.60 9.59 6.81 -12.51 -0.09 9.51 16 22 O -0.48 -9.35 15.64 5.27 0.08 -9.26 16 23 C -0.02 -0.27 6.64 -83.78 -0.56 -0.83 16 24 C -0.23 -2.87 11.21 30.64 0.34 -2.53 16 25 S 0.46 4.64 23.38 -107.50 -2.51 2.12 16 26 N -0.30 -3.91 12.49 60.35 0.75 -3.15 16 27 N -0.21 -2.95 7.90 32.74 0.26 -2.69 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.14 5.21 -51.93 -0.27 0.87 16 30 H 0.07 0.52 7.83 -51.93 -0.41 0.12 16 31 H 0.09 1.15 7.21 -51.93 -0.37 0.77 16 32 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 35 H 0.09 1.68 8.13 -51.92 -0.42 1.26 16 36 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 37 H 0.05 0.86 7.56 -51.92 -0.39 0.47 16 38 H 0.08 1.54 7.68 -51.93 -0.40 1.15 16 39 H 0.37 9.33 6.73 -40.82 -0.27 9.05 16 40 H 0.26 7.28 6.78 -40.82 -0.28 7.01 16 41 H 0.21 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -37.36 358.16 -7.37 -44.73 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.88 Total: 10.00 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -0.60 Total: 7.10 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.14 Total: -63.63 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.17 Total: -25.63 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.90 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.51 Total: 2.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.36 -7.37 -44.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488644338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.078 kcal (2) G-P(sol) polarization free energy of solvation -37.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds