Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00065 * 2 1 4 4 C 1.53004 * 109.47442 * 270.00284 * 3 2 1 5 5 H 1.09003 * 112.74531 * 75.76872 * 4 3 2 6 6 C 1.53515 * 113.47716 * 206.61884 * 4 3 2 7 7 C 1.53512 * 83.57232 * 140.79144 * 6 4 3 8 8 N 1.47474 * 87.93408 * 333.97275 * 7 6 4 9 9 C 1.46900 * 111.00209 * 138.70422 * 8 7 6 10 10 C 1.50706 * 109.46934 * 74.03015 * 9 8 7 11 11 O 1.21283 * 119.99837 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.37106 * 120.00105 * 179.97438 * 12 10 9 14 14 H 1.08007 * 119.99684 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00512 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99716 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00262 * 179.72652 * 15 13 12 18 18 H 1.48497 * 109.47436 * 180.27164 * 17 15 13 19 19 H 1.48496 * 109.47270 * 300.27239 * 17 15 13 20 20 H 1.48509 * 109.47207 * 60.27024 * 17 15 13 21 21 C 1.34777 * 120.00252 * 180.02562 * 2 1 3 22 22 O 1.21605 * 120.00297 * 176.37485 * 21 2 1 23 23 C 1.47450 * 120.00028 * 356.37786 * 21 2 1 24 24 C 1.37980 * 124.15694 * 186.09575 * 23 21 2 25 25 S 1.72103 * 104.03115 * 179.97438 * 24 23 21 26 26 N 1.56400 * 96.15889 * 359.97438 * 25 24 23 27 27 N 1.27422 * 109.87308 * 359.74930 * 26 25 24 28 28 H 1.09002 * 109.47217 * 95.80510 * 1 2 3 29 29 H 1.09004 * 109.46445 * 215.80128 * 1 2 3 30 30 H 1.08994 * 109.47160 * 335.79856 * 1 2 3 31 31 H 1.09006 * 109.47349 * 150.00534 * 3 2 1 32 32 H 1.08998 * 109.47146 * 30.00280 * 3 2 1 33 33 H 1.08994 * 114.16759 * 254.43588 * 6 4 3 34 34 H 1.08992 * 114.17098 * 26.94989 * 6 4 3 35 35 H 1.09010 * 113.47397 * 219.20974 * 7 6 4 36 36 H 1.09000 * 113.48172 * 88.74120 * 7 6 4 37 37 H 1.09007 * 109.47428 * 314.03484 * 9 8 7 38 38 H 1.08995 * 109.47812 * 194.03125 * 9 8 7 39 39 H 0.96997 * 120.00634 * 0.02562 * 12 10 9 40 40 H 0.97007 * 120.00016 * 359.73454 * 16 15 13 41 41 H 1.07994 * 127.98353 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5624 2.1176 -1.9222 6 6 3.6942 2.5994 -1.5995 7 6 3.8976 1.7909 -2.8884 8 7 3.1443 0.6926 -2.2551 9 6 2.2218 0.0667 -3.2118 10 6 3.0035 -0.7808 -4.1823 11 8 4.2101 -0.8563 -4.0862 12 7 2.3616 -1.4548 -5.1571 13 6 3.0727 -2.2254 -6.0404 14 1 4.1473 -2.2920 -5.9553 15 6 2.4111 -2.9198 -7.0457 16 7 1.1036 -2.8383 -7.1496 17 14 3.3807 -3.9636 -8.2538 18 1 2.4489 -4.5912 -9.2249 19 1 4.3504 -3.1063 -8.9816 20 1 4.1138 -5.0232 -7.5154 21 6 2.1389 -1.1672 -0.0005 22 8 3.3532 -1.1682 -0.0671 23 6 1.4040 -2.4429 0.0796 24 6 2.0067 -3.6776 0.2066 25 16 0.6883 -4.7830 0.2511 26 7 -0.4381 -3.7060 0.1186 27 7 0.0799 -2.5442 0.0451 28 1 -0.3634 -0.1039 -1.0224 29 1 -0.3632 -0.8336 0.6012 30 1 -0.3633 0.9373 0.4213 31 1 3.1500 1.1383 0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.4705 3.6533 -1.7643 34 1 4.4592 2.4354 -0.8407 35 1 4.9409 1.5443 -3.0863 36 1 3.3938 2.2201 -3.7545 37 1 1.6836 0.8416 -3.7578 38 1 1.5102 -0.5596 -2.6739 39 1 1.3966 -1.3941 -5.2343 40 1 0.6000 -2.2965 -6.5220 41 1 3.0621 -3.8992 0.2646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488644338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = 40.810658 kcal Electronic energy + Delta-G solvation = -28127.730793 eV Core-core repulsion = 24171.803218 eV Total energy + Delta-G solvation = -3955.927575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30891 -41.56967 -40.19594 -39.58836 -36.60201 -36.35598 -33.35627 -33.24187 -32.08147 -30.19313 -28.06048 -27.59850 -27.35638 -25.41275 -25.25057 -23.29619 -21.62505 -21.52900 -20.61780 -20.02845 -19.63964 -18.21152 -17.67561 -17.43077 -17.40555 -17.03658 -16.69223 -16.47268 -16.28517 -15.91728 -15.51276 -15.33974 -15.13679 -14.67372 -14.20289 -14.09950 -13.99614 -13.74454 -13.43332 -13.17775 -13.00934 -12.95070 -12.82388 -12.66223 -12.35866 -12.02897 -11.95831 -11.92471 -11.63464 -11.54138 -11.19127 -11.15008 -11.12300 -10.89309 -10.48704 -10.17407 -9.87508 -9.47540 -8.99222 -6.12815 -0.98342 -0.09342 0.34694 0.49643 1.47213 1.49387 1.78503 1.89964 1.93163 2.11065 2.35394 2.70594 2.77146 3.09365 3.18987 3.51320 3.60778 3.69369 3.77465 3.99170 4.11664 4.18211 4.20772 4.26240 4.30848 4.37639 4.42818 4.56140 4.75516 4.79973 4.91663 4.95946 5.11719 5.22095 5.36311 5.53895 5.63393 5.87480 6.03175 6.22235 6.42332 6.50642 6.68594 7.07444 7.36205 7.85639 8.47739 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008593 B = 0.004780 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.606006 B = 5856.026572 C = 8214.328427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.594 5.594 3 C 0.136 3.864 4 C 0.005 3.995 5 H 0.096 0.904 6 C -0.108 4.108 7 C -0.002 4.002 8 N -0.450 5.450 9 C 0.034 3.966 10 C 0.445 3.555 11 O -0.608 6.608 12 N -0.589 5.589 13 C -0.409 4.409 14 H 0.070 0.930 15 C -0.041 4.041 16 N -0.914 5.914 17 Si 1.134 2.866 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.273 1.273 21 C 0.591 3.409 22 O -0.533 6.533 23 C -0.044 4.044 24 C -0.253 4.253 25 S 0.555 5.445 26 N -0.331 5.331 27 N -0.218 5.218 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.381 0.619 40 H 0.256 0.744 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 5.322 19.002 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.326 5.326 3 C 0.014 3.986 4 C -0.105 4.105 5 H 0.114 0.886 6 C -0.146 4.146 7 C -0.132 4.132 8 N -0.173 5.173 9 C -0.098 4.098 10 C 0.233 3.767 11 O -0.492 6.492 12 N -0.228 5.228 13 C -0.539 4.539 14 H 0.089 0.911 15 C -0.239 4.239 16 N -0.553 5.553 17 Si 0.953 3.047 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.198 1.198 21 C 0.374 3.626 22 O -0.408 6.408 23 C -0.191 4.191 24 C -0.409 4.409 25 S 0.690 5.310 26 N -0.311 5.311 27 N -0.088 5.088 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.214 0.786 40 H 0.067 0.933 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.703 2.865 18.022 19.119 hybrid contribution 0.496 2.264 0.341 2.343 sum -5.208 5.129 18.363 19.765 Atomic orbital electron populations 1.22389 0.77004 1.05294 1.02537 1.47600 1.08295 1.05024 1.71691 1.21740 0.98074 0.84047 0.94780 1.24083 0.97886 0.92193 0.96322 0.88644 1.23075 0.96485 0.99074 0.95930 1.23639 0.99850 0.91998 0.97673 1.68980 1.15500 1.18931 1.13887 1.22224 0.95169 0.98358 0.94055 1.20682 0.88490 0.84067 0.83460 1.90497 1.16200 1.67621 1.74895 1.42010 1.08918 1.43693 1.28190 1.20498 0.94034 1.27665 1.11655 0.91148 1.27890 0.97176 0.99046 0.99826 1.70980 1.06511 1.39764 1.38068 0.82648 0.73674 0.74754 0.73647 1.19326 1.19753 1.19793 1.16923 0.85914 0.82375 0.77395 1.90881 1.13806 1.86538 1.49534 1.22852 0.89931 0.97309 1.09043 1.29210 1.10772 0.96574 1.04373 1.81094 0.87553 1.15889 1.46419 1.78369 1.28525 1.00792 1.23444 1.71878 1.09021 1.13532 1.14370 0.93699 0.88814 0.87804 0.90602 0.85369 0.87092 0.88689 0.92743 0.91899 0.91096 0.90121 0.78579 0.93296 0.76870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 9.61 127.77 1.23 2.59 16 2 N -0.59 -14.71 2.74 -850.63 -2.33 -17.04 16 3 C 0.14 2.77 5.60 86.38 0.48 3.25 16 4 C 0.01 0.12 3.37 42.18 0.14 0.27 16 5 H 0.10 1.88 7.77 -2.39 -0.02 1.86 16 6 C -0.11 -2.30 8.00 30.94 0.25 -2.05 16 7 C 0.00 -0.08 6.71 83.57 0.56 0.48 16 8 N -0.45 -16.12 4.50 -906.75 -4.08 -20.20 16 9 C 0.03 1.34 5.31 85.56 0.45 1.79 16 10 C 0.45 23.37 7.62 87.66 0.67 24.04 16 11 O -0.61 -36.97 15.34 -3.04 -0.05 -37.02 16 12 N -0.59 -32.25 5.28 -306.98 -1.62 -33.87 16 13 C -0.41 -24.60 9.68 84.04 0.81 -23.79 16 14 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 15 C -0.04 -2.33 5.50 84.93 0.47 -1.86 16 16 N -0.91 -52.67 13.68 21.66 0.30 -52.37 16 17 Si 1.13 49.99 29.92 68.60 2.05 52.04 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 C 0.59 19.11 6.81 86.67 0.59 19.70 16 22 O -0.53 -21.29 15.64 -4.05 -0.06 -21.35 16 23 C -0.04 -1.29 6.64 41.36 0.27 -1.02 16 24 C -0.25 -6.25 11.21 67.76 0.76 -5.49 16 25 S 0.56 10.44 23.38 -56.49 -1.32 9.12 16 26 N -0.33 -8.38 12.49 37.02 0.46 -7.91 16 27 N -0.22 -6.02 7.90 -50.34 -0.40 -6.42 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 2.00 5.21 -2.38 -0.01 1.99 16 30 H 0.10 1.21 7.83 -2.39 -0.02 1.20 16 31 H 0.08 1.82 7.21 -2.38 -0.02 1.80 16 32 H 0.13 1.43 7.86 -2.39 -0.02 1.41 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 2.05 7.93 -2.39 -0.02 2.03 16 35 H 0.05 2.13 8.13 -2.38 -0.02 2.11 16 36 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 37 H 0.07 2.44 7.56 -2.38 -0.02 2.42 16 38 H 0.08 3.14 7.68 -2.39 -0.02 3.12 16 39 H 0.38 19.40 6.73 -92.71 -0.62 18.78 16 40 H 0.26 14.46 6.78 -92.70 -0.63 13.83 16 41 H 0.21 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -85.13 358.16 0.25 -84.88 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.61 Total: 32.24 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.69 Total: 17.90 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -7.67 Total: -137.82 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.11 Total: -58.37 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Atomic # 16 Polarization: 10.44 SS G_CDS: -1.32 Total: 9.12 kcal Total: -85.13 0.25 -84.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488644338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.689 kcal (2) G-P(sol) polarization free energy of solvation -85.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds