Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34805 * 126.59564 * 2 1 4 4 C 1.36599 * 106.84080 * 179.97438 * 3 2 1 5 5 C 1.47522 * 125.77208 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00144 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99827 * 180.02562 * 5 4 3 8 8 C 1.47576 * 134.49404 * 359.97438 * 7 5 4 9 9 C 1.53947 * 86.11800 * 204.64372 * 8 7 5 10 10 C 1.47584 * 134.49098 * 179.97438 * 7 5 4 11 11 H 1.08997 * 113.76763 * 269.65793 * 10 7 5 12 12 C 1.52997 * 113.76977 * 41.05659 * 10 7 5 13 13 N 1.46505 * 109.47296 * 281.49383 * 12 10 7 14 14 C 1.34770 * 120.00116 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00346 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99984 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47289 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00297 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99537 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46942 * 120.00127 * 22 20 18 25 25 H 1.48498 * 109.47131 * 239.99852 * 22 20 18 26 26 N 1.34396 * 108.45503 * 0.24049 * 4 3 2 27 27 N 1.28764 * 109.52477 * 359.58973 * 26 4 3 28 28 H 1.08994 * 109.47180 * 89.99668 * 1 2 3 29 29 H 1.09000 * 109.47626 * 210.00260 * 1 2 3 30 30 H 1.09005 * 109.46960 * 330.00287 * 1 2 3 31 31 H 1.08005 * 126.58154 * 359.97438 * 3 2 1 32 32 H 1.09003 * 113.77250 * 90.33955 * 8 7 5 33 33 H 1.09001 * 113.87174 * 318.95113 * 8 7 5 34 34 H 1.08997 * 113.74250 * 222.05166 * 9 8 7 35 35 H 1.08993 * 113.84054 * 90.74934 * 9 8 7 36 36 H 1.09001 * 109.47378 * 41.49154 * 12 10 7 37 37 H 1.08995 * 109.47542 * 161.49544 * 12 10 7 38 38 H 0.96998 * 119.99703 * 359.97438 * 13 12 10 39 39 H 1.09001 * 109.46705 * 300.00020 * 16 14 13 40 40 H 1.08997 * 109.47341 * 60.00143 * 16 14 13 41 41 H 0.96996 * 119.99844 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5543 0.6206 0.0006 5 6 4.7704 1.4556 0.0003 6 8 4.6756 2.6679 -0.0011 7 7 5.9866 0.8748 0.0004 8 6 6.4662 -0.5209 0.0013 9 6 7.7528 0.0319 0.6410 10 6 7.3736 1.3791 -0.0003 11 1 7.7883 1.5228 -0.9980 12 6 7.5926 2.5827 0.9184 13 7 7.0932 3.7943 0.2634 14 6 7.1819 4.9843 0.8898 15 8 7.6754 5.0524 1.9955 16 6 6.6676 6.2305 0.2163 17 16 6.9268 7.6545 1.3031 18 6 6.2541 8.9344 0.2962 19 1 5.8493 8.6993 -0.6771 20 6 6.2443 10.2447 0.7538 21 7 6.7381 10.5313 1.9399 22 14 5.5317 11.6018 -0.3140 23 1 5.0453 11.0222 -1.5918 24 1 4.4005 12.2491 0.3977 25 1 6.5822 12.6126 -0.5965 26 7 3.5238 -0.7230 -0.0044 27 7 2.3008 -1.1257 0.0006 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9561 2.1161 -0.0004 32 1 6.6144 -0.9352 -0.9960 33 1 5.8988 -1.1819 0.6565 34 1 8.6662 -0.4046 0.2372 35 1 7.7330 0.0436 1.7307 36 1 7.0556 2.4280 1.8543 37 1 8.6571 2.6937 1.1245 38 1 6.6995 3.7401 -0.6214 39 1 7.2039 6.3851 -0.7200 40 1 5.6029 6.1197 0.0111 41 1 6.7317 11.4471 2.2595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505616548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = 70.586552 kcal Electronic energy + Delta-G solvation = -26206.800971 eV Core-core repulsion = 22252.164575 eV Total energy + Delta-G solvation = -3954.636395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53632 -40.56808 -38.70325 -37.81693 -35.06938 -34.14281 -32.34783 -31.52198 -30.32852 -29.68251 -28.14988 -27.51131 -25.39645 -24.17068 -23.28750 -22.56083 -21.76985 -20.16500 -19.48226 -18.09045 -17.67442 -16.75467 -16.63334 -16.38760 -16.26343 -15.89643 -15.09150 -14.95253 -14.84797 -14.73427 -14.31152 -14.04928 -13.82201 -13.62887 -13.58343 -13.00223 -12.76561 -12.68089 -12.50147 -12.45998 -12.25614 -11.86776 -11.61260 -11.54358 -11.17098 -11.01435 -10.92927 -10.78778 -10.67869 -10.13150 -9.71071 -9.65261 -9.18444 -8.99910 -8.94798 -8.61119 -8.11015 -6.38845 -6.13814 -3.82517 0.77164 1.41018 1.63096 2.45598 3.07688 3.18918 3.26161 3.33197 3.34839 3.41702 3.76225 3.86774 3.93575 4.14893 4.28017 4.28624 4.46010 4.56507 4.62460 4.72277 4.76047 4.88835 4.94683 5.05759 5.14123 5.21056 5.25760 5.36103 5.39777 5.56244 5.68799 5.79398 5.90320 5.91932 6.02982 6.10034 6.34242 6.84694 7.39498 7.53556 7.68048 7.92717 8.01213 8.43988 8.85563 9.31516 10.93777 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.002576 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.807967 B =10867.280312 C =12701.920268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 C 0.096 3.904 4 C -0.096 4.096 5 C 0.621 3.379 6 O -0.517 6.517 7 N -0.631 5.631 8 C 0.111 3.889 9 C -0.146 4.146 10 C 0.127 3.873 11 H 0.103 0.897 12 C 0.123 3.877 13 N -0.723 5.723 14 C 0.536 3.464 15 O -0.528 6.528 16 C -0.149 4.149 17 S -0.064 6.064 18 C -0.531 4.531 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.280 1.280 26 N -0.203 5.203 27 N -0.071 5.071 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.400 0.600 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -27.769 -7.180 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.149 5.149 3 C -0.061 4.061 4 C -0.235 4.235 5 C 0.408 3.592 6 O -0.391 6.391 7 N -0.368 5.368 8 C -0.011 4.011 9 C -0.184 4.184 10 C 0.024 3.976 11 H 0.121 0.879 12 C -0.002 4.002 13 N -0.377 5.377 14 C 0.322 3.678 15 O -0.403 6.403 16 C -0.300 4.300 17 S 0.163 5.837 18 C -0.679 4.679 19 H 0.090 0.910 20 C -0.137 4.137 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.077 5.077 27 N -0.051 5.051 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.862 -28.294 -5.204 29.823 hybrid contribution -1.691 1.770 -2.460 3.470 sum -9.553 -26.524 -7.664 29.215 Atomic orbital electron populations 1.22230 0.72324 1.05969 1.04889 1.50361 1.09235 1.05662 1.49592 1.23460 0.90128 0.95176 0.97338 1.21398 0.94362 0.90339 1.17433 1.16399 0.80414 0.86005 0.76387 1.90903 1.85508 1.12497 1.50199 1.49900 1.03966 1.09689 1.73210 1.23161 0.92263 0.84466 1.01260 1.23597 0.98401 0.94277 1.02139 1.23200 0.79565 0.95007 0.99821 0.87932 1.21388 1.00102 0.83034 0.95702 1.45792 1.64060 1.06218 1.21616 1.20182 0.77867 0.84000 0.85723 1.90675 1.43918 1.86161 1.19552 1.23484 1.03989 0.98067 1.04413 1.85333 1.80301 0.94845 1.23199 1.22924 1.45884 0.93956 1.05176 0.90959 1.24991 0.95251 0.98020 0.95444 1.70039 1.43164 1.19884 1.17355 0.86126 0.78661 0.80825 0.79930 1.19644 1.20648 1.20623 1.74625 1.12767 1.10358 1.09972 1.81987 0.93543 1.06602 1.22981 0.89108 0.88024 0.88168 0.77616 0.89573 0.89001 0.89025 0.88357 0.91285 0.90235 0.76498 0.89570 0.89158 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.22 11.51 59.85 0.69 0.91 16 2 N -0.36 -2.75 4.03 -67.85 -0.27 -3.02 16 3 C 0.10 0.84 11.31 -16.84 -0.19 0.65 16 4 C -0.10 -1.07 6.95 -83.55 -0.58 -1.66 16 5 C 0.62 7.87 7.95 -12.48 -0.10 7.77 16 6 O -0.52 -8.04 14.97 5.28 0.08 -7.96 16 7 N -0.63 -6.48 3.49 -172.43 -0.60 -7.08 16 8 C 0.11 0.78 7.86 -2.98 -0.02 0.76 16 9 C -0.15 -0.87 7.86 -25.80 -0.20 -1.08 16 10 C 0.13 1.13 4.28 -66.86 -0.29 0.84 16 11 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 12 C 0.12 1.57 5.32 -4.04 -0.02 1.55 16 13 N -0.72 -11.42 4.27 -60.29 -0.26 -11.67 16 14 C 0.54 11.18 7.85 -10.99 -0.09 11.09 16 15 O -0.53 -12.93 15.86 5.56 0.09 -12.84 16 16 C -0.15 -3.32 6.16 36.01 0.22 -3.10 16 17 S -0.06 -1.82 20.57 -107.50 -2.21 -4.03 16 18 C -0.53 -15.73 9.50 30.94 0.29 -15.44 16 19 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.91 13.22 55.49 0.73 -26.17 16 22 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 N -0.20 -2.27 10.70 32.85 0.35 -1.92 16 27 N -0.07 -0.74 13.78 60.35 0.83 0.10 16 28 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.21 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.69 7.46 -51.93 -0.39 0.30 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.40 5.76 7.54 -40.82 -0.31 5.45 16 39 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 40 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -40.44 372.50 -6.36 -46.80 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.31 Total: 0.90 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.38 Total: 4.31 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.78 Total: -49.77 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.21 Total: -4.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.44 -6.36 -46.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505616548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.391 kcal (2) G-P(sol) polarization free energy of solvation -40.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds