Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34805 * 126.59564 * 2 1 4 4 C 1.36599 * 106.84080 * 179.97438 * 3 2 1 5 5 C 1.47522 * 125.77208 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00144 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99827 * 180.02562 * 5 4 3 8 8 C 1.47576 * 134.49404 * 359.97438 * 7 5 4 9 9 C 1.53947 * 86.11800 * 204.64372 * 8 7 5 10 10 C 1.47584 * 134.49098 * 179.97438 * 7 5 4 11 11 H 1.08997 * 113.76763 * 269.65793 * 10 7 5 12 12 C 1.52997 * 113.76977 * 41.05659 * 10 7 5 13 13 N 1.46505 * 109.47296 * 281.49383 * 12 10 7 14 14 C 1.34770 * 120.00116 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00346 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99984 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47289 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00297 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99537 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46942 * 120.00127 * 22 20 18 25 25 H 1.48498 * 109.47131 * 239.99852 * 22 20 18 26 26 N 1.34396 * 108.45503 * 0.24049 * 4 3 2 27 27 N 1.28764 * 109.52477 * 359.58973 * 26 4 3 28 28 H 1.08994 * 109.47180 * 89.99668 * 1 2 3 29 29 H 1.09000 * 109.47626 * 210.00260 * 1 2 3 30 30 H 1.09005 * 109.46960 * 330.00287 * 1 2 3 31 31 H 1.08005 * 126.58154 * 359.97438 * 3 2 1 32 32 H 1.09003 * 113.77250 * 90.33955 * 8 7 5 33 33 H 1.09001 * 113.87174 * 318.95113 * 8 7 5 34 34 H 1.08997 * 113.74250 * 222.05166 * 9 8 7 35 35 H 1.08993 * 113.84054 * 90.74934 * 9 8 7 36 36 H 1.09001 * 109.47378 * 41.49154 * 12 10 7 37 37 H 1.08995 * 109.47542 * 161.49544 * 12 10 7 38 38 H 0.96998 * 119.99703 * 359.97438 * 13 12 10 39 39 H 1.09001 * 109.46705 * 300.00020 * 16 14 13 40 40 H 1.08997 * 109.47341 * 60.00143 * 16 14 13 41 41 H 0.96996 * 119.99844 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5543 0.6206 0.0006 5 6 4.7704 1.4556 0.0003 6 8 4.6756 2.6679 -0.0011 7 7 5.9866 0.8748 0.0004 8 6 6.4662 -0.5209 0.0013 9 6 7.7528 0.0319 0.6410 10 6 7.3736 1.3791 -0.0003 11 1 7.7883 1.5228 -0.9980 12 6 7.5926 2.5827 0.9184 13 7 7.0932 3.7943 0.2634 14 6 7.1819 4.9843 0.8898 15 8 7.6754 5.0524 1.9955 16 6 6.6676 6.2305 0.2163 17 16 6.9268 7.6545 1.3031 18 6 6.2541 8.9344 0.2962 19 1 5.8493 8.6993 -0.6771 20 6 6.2443 10.2447 0.7538 21 7 6.7381 10.5313 1.9399 22 14 5.5317 11.6018 -0.3140 23 1 5.0453 11.0222 -1.5918 24 1 4.4005 12.2491 0.3977 25 1 6.5822 12.6126 -0.5965 26 7 3.5238 -0.7230 -0.0044 27 7 2.3008 -1.1257 0.0006 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9561 2.1161 -0.0004 32 1 6.6144 -0.9352 -0.9960 33 1 5.8988 -1.1819 0.6565 34 1 8.6662 -0.4046 0.2372 35 1 7.7330 0.0436 1.7307 36 1 7.0556 2.4280 1.8543 37 1 8.6571 2.6937 1.1245 38 1 6.6995 3.7401 -0.6214 39 1 7.2039 6.3851 -0.7200 40 1 5.6029 6.1197 0.0111 41 1 6.7317 11.4471 2.2595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505616548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = 39.059399 kcal Electronic energy + Delta-G solvation = -26208.168090 eV Core-core repulsion = 22252.164575 eV Total energy + Delta-G solvation = -3956.003515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.23069 -41.41355 -40.25620 -38.71499 -35.72310 -35.46965 -34.58435 -32.34024 -31.55468 -30.68538 -28.75190 -28.57643 -27.62801 -24.94533 -24.15282 -23.18280 -22.47184 -21.68706 -20.29049 -19.80267 -18.69954 -17.83606 -17.54288 -17.48640 -17.17888 -16.91887 -16.88284 -16.42806 -16.12546 -15.71428 -15.58707 -15.10523 -14.93015 -14.58566 -14.44074 -14.11220 -14.08814 -13.82153 -13.40576 -13.25176 -13.15958 -13.13910 -12.99933 -12.89519 -12.62187 -12.45511 -12.28155 -11.94251 -11.68708 -11.35301 -11.15573 -11.05468 -10.85619 -10.41025 -10.28088 -10.03618 -9.71150 -8.66582 -8.34454 -6.12644 0.10875 0.59815 1.11801 1.27150 1.41435 1.46494 1.58286 1.66444 1.74639 2.21706 2.27147 2.39407 2.99153 3.07577 3.31366 3.37994 3.50693 3.76021 3.80373 3.92484 4.01650 4.05994 4.20251 4.27116 4.31568 4.33527 4.45293 4.51076 4.52163 4.64185 4.69506 4.77073 4.81444 5.03033 5.09554 5.33906 5.39718 5.41757 5.48934 6.20393 6.52884 6.60065 6.78626 7.06276 7.09954 7.29028 8.75344 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.002576 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.807967 B =10867.280312 C =12701.920268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.352 5.352 3 C 0.101 3.899 4 C -0.121 4.121 5 C 0.613 3.387 6 O -0.560 6.560 7 N -0.637 5.637 8 C 0.113 3.887 9 C -0.127 4.127 10 C 0.126 3.874 11 H 0.128 0.872 12 C 0.120 3.880 13 N -0.699 5.699 14 C 0.535 3.465 15 O -0.571 6.571 16 C -0.125 4.125 17 S -0.148 6.148 18 C -0.546 4.546 19 H 0.080 0.920 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.002 2.998 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.214 5.214 27 N -0.093 5.093 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.410 0.590 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 -28.931 -9.382 31.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.136 5.136 3 C -0.058 4.058 4 C -0.261 4.261 5 C 0.401 3.599 6 O -0.437 6.437 7 N -0.372 5.372 8 C -0.009 4.009 9 C -0.165 4.165 10 C 0.024 3.976 11 H 0.145 0.855 12 C -0.004 4.004 13 N -0.351 5.351 14 C 0.321 3.679 15 O -0.451 6.451 16 C -0.276 4.276 17 S 0.079 5.921 18 C -0.694 4.694 19 H 0.098 0.902 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.197 1.197 26 N -0.088 5.088 27 N -0.074 5.074 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.247 0.753 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.767 -29.562 -7.439 31.719 hybrid contribution -1.474 1.973 -1.772 3.034 sum -10.241 -27.590 -9.211 30.837 Atomic orbital electron populations 1.22707 0.69438 1.07669 1.06611 1.50677 1.10678 1.04540 1.47711 1.23788 0.89649 0.96173 0.96186 1.21457 0.94857 0.90553 1.19220 1.16690 0.81483 0.85753 0.75990 1.90856 1.86290 1.14043 1.52560 1.50159 1.03761 1.11365 1.71899 1.23359 0.92170 0.82895 1.02450 1.23567 0.99351 0.91722 1.01847 1.23416 0.79340 0.94417 1.00452 0.85475 1.21594 1.00006 0.83124 0.95663 1.45624 1.62302 1.05638 1.21560 1.19951 0.77762 0.84951 0.85217 1.90658 1.46274 1.86822 1.21341 1.23312 1.04812 0.95967 1.03529 1.85483 1.80967 0.98745 1.26902 1.23222 1.46292 0.94454 1.05383 0.90219 1.26163 0.95272 1.00873 0.96926 1.70196 1.44320 1.20824 1.19460 0.84867 0.77931 0.76809 0.78075 1.18180 1.19771 1.19676 1.74581 1.13372 1.10373 1.10445 1.81892 0.93766 1.07867 1.23833 0.87293 0.87024 0.85844 0.75721 0.87519 0.89569 0.85507 0.88815 0.93644 0.89364 0.75350 0.87520 0.88428 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.51 127.77 1.47 1.68 16 2 N -0.35 -4.84 4.03 -368.59 -1.49 -6.33 16 3 C 0.10 1.67 11.31 83.85 0.95 2.62 16 4 C -0.12 -2.68 6.95 40.82 0.28 -2.39 16 5 C 0.61 15.46 7.95 86.69 0.69 16.14 16 6 O -0.56 -17.57 14.97 -4.03 -0.06 -17.63 16 7 N -0.64 -12.36 3.49 -817.69 -2.85 -15.22 16 8 C 0.11 1.35 7.86 86.48 0.68 2.03 16 9 C -0.13 -1.17 7.86 31.26 0.25 -0.93 16 10 C 0.13 1.98 4.28 45.09 0.19 2.18 16 11 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 12 C 0.12 3.01 5.32 86.38 0.46 3.47 16 13 N -0.70 -21.79 4.27 -463.06 -1.98 -23.77 16 14 C 0.54 22.63 7.85 87.66 0.69 23.31 16 15 O -0.57 -28.92 15.86 -3.02 -0.05 -28.97 16 16 C -0.12 -5.62 6.16 71.24 0.44 -5.18 16 17 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 18 C -0.55 -32.64 9.50 67.95 0.65 -32.00 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -57.47 13.22 21.65 0.29 -57.18 16 22 Si 1.00 44.89 29.55 68.60 2.03 46.92 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 N -0.21 -4.70 10.70 -50.00 -0.53 -5.23 16 27 N -0.09 -1.87 13.78 37.02 0.51 -1.36 16 28 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 31 H 0.23 2.66 8.06 -2.91 -0.02 2.63 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.18 7.46 -2.39 -0.02 1.16 16 34 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.41 11.38 7.54 -92.71 -0.70 10.68 16 39 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 40 H 0.10 4.23 8.14 -2.40 -0.02 4.21 16 41 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -91.65 372.50 2.29 -89.36 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.37 Total: 17.19 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.21 Total: 12.12 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -6.05 Total: -109.09 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.11 Total: -46.60 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -91.65 2.29 -89.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505616548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.421 kcal (2) G-P(sol) polarization free energy of solvation -91.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds