Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34593 * 125.75082 * 2 1 4 4 N 1.30867 * 107.62523 * 179.77008 * 3 2 1 5 5 C 1.34545 * 107.26860 * 0.39267 * 4 3 2 6 6 C 1.47873 * 126.04399 * 179.86902 * 5 4 3 7 7 O 1.21559 * 119.99711 * 179.69097 * 6 5 4 8 8 N 1.34771 * 120.00179 * 359.68876 * 6 5 4 9 9 C 1.46505 * 120.00236 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47389 * 175.01376 * 9 8 6 11 11 H 1.08996 * 112.74110 * 314.99079 * 10 9 8 12 12 C 1.53500 * 113.46502 * 85.80705 * 10 9 8 13 13 C 1.53497 * 83.34340 * 140.85000 * 12 10 9 14 14 N 1.47068 * 113.46778 * 184.24012 * 10 9 8 15 15 C 1.34777 * 136.05579 * 38.13979 * 14 10 9 16 16 O 1.21274 * 120.00143 * 5.03094 * 15 14 10 17 17 C 1.50702 * 119.99652 * 185.03345 * 15 14 10 18 18 S 1.81005 * 109.46822 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99660 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00274 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99690 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99857 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00093 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 89.99642 * 23 21 19 25 25 H 1.48492 * 109.47294 * 209.99988 * 23 21 19 26 26 H 1.48504 * 109.47094 * 330.00080 * 23 21 19 27 27 N 1.28854 * 125.75136 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.46897 * 269.99778 * 1 2 3 29 29 H 1.09001 * 109.46909 * 29.99928 * 1 2 3 30 30 H 1.08999 * 109.46862 * 150.00076 * 1 2 3 31 31 H 1.07997 * 126.18313 * 0.03985 * 3 2 1 32 32 H 0.97000 * 120.00579 * 359.97438 * 8 6 5 33 33 H 1.09006 * 109.46645 * 295.01616 * 9 8 6 34 34 H 1.09001 * 109.46850 * 55.00886 * 9 8 6 35 35 H 1.09006 * 114.20292 * 254.43458 * 12 10 9 36 36 H 1.09000 * 114.20635 * 27.25835 * 12 10 9 37 37 H 1.09000 * 113.46745 * 219.15478 * 13 12 10 38 38 H 1.08993 * 113.47042 * 88.71277 * 13 12 10 39 39 H 1.08996 * 109.47338 * 299.99782 * 17 15 14 40 40 H 1.09001 * 109.47352 * 59.99814 * 17 15 14 41 41 H 0.97004 * 120.00030 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0923 0.0000 4 7 3.4951 0.6852 0.0050 5 6 3.4750 -0.6601 -0.0007 6 6 4.6575 -1.5480 -0.0008 7 8 4.5114 -2.7547 -0.0006 8 7 5.8972 -1.0192 -0.0010 9 6 7.0688 -1.8989 -0.0017 10 6 8.3394 -1.0559 -0.1272 11 1 8.2579 -0.2820 -0.8904 12 6 8.8637 -0.5363 1.2186 13 6 10.2341 -0.8537 0.6044 14 7 9.5666 -1.8590 -0.2362 15 6 9.9229 -3.0095 -0.8411 16 8 9.1363 -3.5834 -1.5640 17 6 11.2989 -3.5828 -0.6190 18 16 11.4709 -5.1200 -1.5590 19 6 13.1223 -5.5586 -1.1286 20 1 13.6925 -4.9277 -0.4630 21 6 13.6899 -6.7155 -1.6444 22 7 14.9237 -7.0428 -1.3233 23 14 12.7033 -7.8071 -2.7952 24 1 12.9210 -7.3717 -4.1982 25 1 13.1446 -9.2164 -2.6402 26 1 11.2600 -7.7008 -2.4623 27 7 2.2179 -1.0457 -0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9165 2.1190 0.0006 32 1 6.0139 -0.0563 -0.0016 33 1 7.0987 -2.4648 0.9295 34 1 7.0052 -2.5880 -0.8438 35 1 8.6849 0.5255 1.3880 36 1 8.6008 -1.1613 2.0721 37 1 10.9400 -1.2823 1.3158 38 1 10.6577 -0.0253 0.0367 39 1 12.0493 -2.8664 -0.9530 40 1 11.4399 -3.7885 0.4421 41 1 15.3203 -7.8515 -1.6834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505699038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = 71.478296 kcal Electronic energy + Delta-G solvation = -25545.606873 eV Core-core repulsion = 21591.009147 eV Total energy + Delta-G solvation = -3954.597727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -43.86932 -40.64338 -39.40890 -37.60818 -35.14009 -34.78654 -32.41586 -32.19507 -30.89789 -29.35314 -28.28436 -27.76649 -25.58460 -24.60793 -23.22735 -22.47448 -22.11403 -20.88325 -19.21768 -18.44213 -17.71174 -17.24045 -16.98624 -16.76361 -16.40116 -15.69540 -15.46385 -15.29153 -14.98867 -14.82269 -14.44834 -14.01066 -13.98824 -13.85143 -13.73593 -13.41680 -12.86569 -12.79484 -12.69593 -12.38606 -12.18319 -12.01062 -11.68396 -11.23351 -10.97895 -10.94800 -10.88432 -10.83822 -10.59717 -10.44983 -10.01470 -9.82577 -9.51800 -9.21823 -8.97750 -8.72286 -8.46988 -6.89393 -6.26551 -3.98230 1.01638 1.67146 1.70087 2.42003 2.81428 2.94782 3.11151 3.18875 3.36207 3.54622 3.59715 3.69761 3.89694 4.05659 4.27739 4.35850 4.39148 4.48931 4.56753 4.63506 4.71449 4.78065 4.84153 5.05202 5.12714 5.18534 5.32632 5.48639 5.50432 5.61680 5.73068 5.77197 5.82590 5.91244 5.96796 5.99891 6.04023 6.20962 7.13153 7.58666 7.75496 7.94834 7.96466 8.42818 8.43812 9.19749 10.82579 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.001993 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.465746 B =14044.569939 C =15091.191721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.305 5.305 3 C 0.191 3.809 4 N -0.486 5.486 5 C 0.145 3.855 6 C 0.614 3.386 7 O -0.510 6.510 8 N -0.705 5.705 9 C 0.113 3.887 10 C 0.124 3.876 11 H 0.098 0.902 12 C -0.152 4.152 13 C 0.101 3.899 14 N -0.646 5.646 15 C 0.559 3.441 16 O -0.511 6.511 17 C -0.115 4.115 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.251 5.251 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.228 0.772 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.635 24.872 6.816 37.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.101 5.101 3 C -0.104 4.104 4 N -0.211 5.211 5 C -0.135 4.135 6 C 0.395 3.605 7 O -0.381 6.381 8 N -0.358 5.358 9 C -0.011 4.011 10 C 0.020 3.980 11 H 0.116 0.884 12 C -0.190 4.190 13 C -0.022 4.022 14 N -0.385 5.385 15 C 0.349 3.651 16 O -0.384 6.384 17 C -0.265 4.265 18 S 0.086 5.914 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 N -0.090 5.090 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.244 0.756 32 H 0.245 0.755 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.551 22.253 5.607 35.857 hybrid contribution 0.573 0.957 0.288 1.152 sum -26.978 23.210 5.895 36.073 Atomic orbital electron populations 1.22283 0.72037 1.06145 1.05136 1.47415 1.09453 1.03830 1.49380 1.26500 0.85830 0.96023 1.02075 1.71247 1.20530 1.09314 1.20048 1.23718 0.92174 0.89427 1.08165 1.16214 0.80973 0.85847 0.77457 1.90895 1.85424 1.13481 1.48299 1.45443 1.04475 1.11074 1.74857 1.21675 0.82074 0.92790 1.04527 1.22768 0.86030 0.92116 0.97119 0.88436 1.23610 0.96182 1.02539 0.96663 1.22919 0.96478 0.90466 0.92358 1.49706 1.13265 1.21653 1.53922 1.19970 0.89012 0.78386 0.77731 1.90728 1.52915 1.59152 1.35616 1.23207 0.95209 1.02582 1.05507 1.84837 1.20663 1.22886 1.63060 1.22307 0.96550 1.12973 1.35035 0.89383 1.24701 0.94501 0.96521 0.95518 1.69937 1.12976 1.25272 1.43494 0.86744 0.83012 0.80305 0.81878 1.19205 1.19917 1.15853 1.74383 1.02858 1.13261 1.18489 0.88992 0.87850 0.88039 0.75627 0.75545 0.90437 0.88866 0.88981 0.88299 0.89804 0.89537 0.88623 0.88452 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.10 11.38 59.85 0.68 0.78 16 2 N -0.31 -2.00 3.72 -69.39 -0.26 -2.26 16 3 C 0.19 1.05 12.62 -90.48 -1.14 -0.10 16 4 N -0.49 -4.48 11.09 -12.37 -0.14 -4.62 16 5 C 0.15 1.77 7.96 -156.36 -1.24 0.52 16 6 C 0.61 8.64 7.83 -12.32 -0.10 8.55 16 7 O -0.51 -9.33 17.08 5.31 0.09 -9.24 16 8 N -0.70 -7.80 5.55 -61.24 -0.34 -8.14 16 9 C 0.11 1.44 5.47 -4.04 -0.02 1.42 16 10 C 0.12 1.28 4.07 -72.39 -0.29 0.98 16 11 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 12 C -0.15 -1.07 8.02 -26.22 -0.21 -1.28 16 13 C 0.10 0.89 8.42 -8.50 -0.07 0.81 16 14 N -0.65 -8.75 3.57 -177.44 -0.63 -9.38 16 15 C 0.56 10.53 7.97 -10.98 -0.09 10.44 16 16 O -0.51 -11.59 15.46 5.56 0.09 -11.50 16 17 C -0.11 -2.31 5.99 36.01 0.22 -2.09 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 19 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 20 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 22 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 23 Si 0.86 22.26 27.74 -169.99 -4.72 17.54 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.23 -6.13 6.74 56.52 0.38 -5.75 16 27 N -0.25 -2.92 12.08 32.07 0.39 -2.53 16 28 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 29 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.23 -0.01 8.06 -52.49 -0.42 -0.43 16 32 H 0.41 3.38 8.19 -40.82 -0.33 3.05 16 33 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 34 H 0.09 1.56 7.14 -51.93 -0.37 1.19 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.73 7.95 -51.93 -0.41 0.32 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 40 H 0.10 1.84 8.14 -51.91 -0.42 1.42 16 41 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -41.89 373.86 -8.49 -50.38 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.33 Total: -1.99 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.06 Total: 7.84 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.21 Total: -53.01 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.18 Total: -20.74 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.72 Total: 17.54 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.89 -8.49 -50.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505699038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.863 kcal (2) G-P(sol) polarization free energy of solvation -41.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds