Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34593 * 125.75082 * 2 1 4 4 N 1.30867 * 107.62523 * 179.77008 * 3 2 1 5 5 C 1.34545 * 107.26860 * 0.39267 * 4 3 2 6 6 C 1.47873 * 126.04399 * 179.86902 * 5 4 3 7 7 O 1.21559 * 119.99711 * 179.69097 * 6 5 4 8 8 N 1.34771 * 120.00179 * 359.68876 * 6 5 4 9 9 C 1.46505 * 120.00236 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47389 * 175.01376 * 9 8 6 11 11 H 1.08996 * 112.74110 * 314.99079 * 10 9 8 12 12 C 1.53500 * 113.46502 * 85.80705 * 10 9 8 13 13 C 1.53497 * 83.34340 * 140.85000 * 12 10 9 14 14 N 1.47068 * 113.46778 * 184.24012 * 10 9 8 15 15 C 1.34777 * 136.05579 * 38.13979 * 14 10 9 16 16 O 1.21274 * 120.00143 * 5.03094 * 15 14 10 17 17 C 1.50702 * 119.99652 * 185.03345 * 15 14 10 18 18 S 1.81005 * 109.46822 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99660 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00274 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99690 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99857 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00093 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 89.99642 * 23 21 19 25 25 H 1.48492 * 109.47294 * 209.99988 * 23 21 19 26 26 H 1.48504 * 109.47094 * 330.00080 * 23 21 19 27 27 N 1.28854 * 125.75136 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.46897 * 269.99778 * 1 2 3 29 29 H 1.09001 * 109.46909 * 29.99928 * 1 2 3 30 30 H 1.08999 * 109.46862 * 150.00076 * 1 2 3 31 31 H 1.07997 * 126.18313 * 0.03985 * 3 2 1 32 32 H 0.97000 * 120.00579 * 359.97438 * 8 6 5 33 33 H 1.09006 * 109.46645 * 295.01616 * 9 8 6 34 34 H 1.09001 * 109.46850 * 55.00886 * 9 8 6 35 35 H 1.09006 * 114.20292 * 254.43458 * 12 10 9 36 36 H 1.09000 * 114.20635 * 27.25835 * 12 10 9 37 37 H 1.09000 * 113.46745 * 219.15478 * 13 12 10 38 38 H 1.08993 * 113.47042 * 88.71277 * 13 12 10 39 39 H 1.08996 * 109.47338 * 299.99782 * 17 15 14 40 40 H 1.09001 * 109.47352 * 59.99814 * 17 15 14 41 41 H 0.97004 * 120.00030 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0923 0.0000 4 7 3.4951 0.6852 0.0050 5 6 3.4750 -0.6601 -0.0007 6 6 4.6575 -1.5480 -0.0008 7 8 4.5114 -2.7547 -0.0006 8 7 5.8972 -1.0192 -0.0010 9 6 7.0688 -1.8989 -0.0017 10 6 8.3394 -1.0559 -0.1272 11 1 8.2579 -0.2820 -0.8904 12 6 8.8637 -0.5363 1.2186 13 6 10.2341 -0.8537 0.6044 14 7 9.5666 -1.8590 -0.2362 15 6 9.9229 -3.0095 -0.8411 16 8 9.1363 -3.5834 -1.5640 17 6 11.2989 -3.5828 -0.6190 18 16 11.4709 -5.1200 -1.5590 19 6 13.1223 -5.5586 -1.1286 20 1 13.6925 -4.9277 -0.4630 21 6 13.6899 -6.7155 -1.6444 22 7 14.9237 -7.0428 -1.3233 23 14 12.7033 -7.8071 -2.7952 24 1 12.9210 -7.3717 -4.1982 25 1 13.1446 -9.2164 -2.6402 26 1 11.2600 -7.7008 -2.4623 27 7 2.2179 -1.0457 -0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9165 2.1190 0.0006 32 1 6.0139 -0.0563 -0.0016 33 1 7.0987 -2.4648 0.9295 34 1 7.0052 -2.5880 -0.8438 35 1 8.6849 0.5255 1.3880 36 1 8.6008 -1.1613 2.0721 37 1 10.9400 -1.2823 1.3158 38 1 10.6577 -0.0253 0.0367 39 1 12.0493 -2.8664 -0.9530 40 1 11.4399 -3.7885 0.4421 41 1 15.3203 -7.8515 -1.6834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505699038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = 38.280102 kcal Electronic energy + Delta-G solvation = -25547.046455 eV Core-core repulsion = 21591.009147 eV Total energy + Delta-G solvation = -3956.037308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -44.46692 -41.67966 -40.52188 -38.95008 -36.04746 -35.45113 -34.69581 -32.81699 -32.26078 -30.21161 -29.51312 -28.31253 -27.85426 -25.34948 -23.96227 -23.24455 -22.96110 -21.81665 -20.38887 -19.69417 -19.17930 -18.06935 -17.80944 -17.63643 -17.43591 -17.16238 -16.69851 -16.63759 -16.32401 -15.87629 -15.66359 -15.49737 -14.95363 -14.91169 -14.72774 -14.04808 -13.97975 -13.92904 -13.85157 -13.49657 -13.31676 -13.05128 -12.99563 -12.87450 -12.68101 -12.41519 -11.89124 -11.78406 -11.60919 -11.49305 -11.45954 -11.19328 -10.92722 -10.67548 -10.56168 -10.27517 -9.82140 -9.03418 -8.53837 -6.25025 0.24540 0.90197 1.09493 1.19639 1.28567 1.41795 1.48510 1.51286 1.80128 2.15030 2.17725 2.23150 2.65858 2.84298 3.05155 3.27477 3.47628 3.57388 3.67921 3.89194 3.97430 4.01458 4.18080 4.34408 4.39881 4.41024 4.47869 4.56032 4.65625 4.69877 4.71152 4.80739 4.92057 5.01114 5.13455 5.28425 5.33225 5.64740 5.68833 6.08869 6.23711 6.57829 6.88235 6.91504 7.03246 7.05492 8.58448 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.001993 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.465746 B =14044.569939 C =15091.191721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.210 3.790 4 N -0.502 5.502 5 C 0.118 3.882 6 C 0.608 3.392 7 O -0.568 6.568 8 N -0.682 5.682 9 C 0.120 3.880 10 C 0.122 3.878 11 H 0.124 0.876 12 C -0.126 4.126 13 C 0.095 3.905 14 N -0.648 5.648 15 C 0.557 3.443 16 O -0.564 6.564 17 C -0.098 4.098 18 S -0.181 6.181 19 C -0.527 4.527 20 H 0.064 0.936 21 C 0.049 3.951 22 N -0.914 5.914 23 Si 0.911 3.089 24 H -0.261 1.261 25 H -0.257 1.257 26 H -0.242 1.242 27 N -0.290 5.290 28 H 0.108 0.892 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.285 0.715 32 H 0.426 0.574 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.446 28.963 7.539 41.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.095 5.095 3 C -0.084 4.084 4 N -0.228 5.228 5 C -0.160 4.160 6 C 0.391 3.609 7 O -0.444 6.444 8 N -0.336 5.336 9 C -0.004 4.004 10 C 0.019 3.981 11 H 0.142 0.858 12 C -0.163 4.163 13 C -0.026 4.026 14 N -0.385 5.385 15 C 0.346 3.654 16 O -0.442 6.442 17 C -0.249 4.249 18 S 0.046 5.954 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.157 4.157 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.186 1.186 25 H -0.181 1.181 26 H -0.166 1.166 27 N -0.132 5.132 28 H 0.126 0.874 29 H 0.165 0.835 30 H 0.111 0.889 31 H 0.300 0.700 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.156 0.844 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.356 26.455 6.376 40.029 hybrid contribution 0.984 -0.053 0.174 1.000 sum -28.373 26.403 6.550 39.307 Atomic orbital electron populations 1.22780 0.69083 1.07895 1.06766 1.47819 1.10950 1.03000 1.47772 1.27580 0.84459 0.97620 0.98784 1.71187 1.22894 1.07555 1.21168 1.23275 0.91607 0.90452 1.10713 1.16652 0.82275 0.85535 0.76395 1.90849 1.86390 1.16001 1.51136 1.45215 1.03280 1.11624 1.73493 1.21463 0.84035 0.93020 1.01918 1.23168 0.83368 0.91257 1.00355 0.85836 1.23586 0.93625 1.05000 0.94136 1.23376 0.97614 0.89562 0.92013 1.49786 1.15745 1.20687 1.52310 1.19624 0.87829 0.80013 0.77971 1.90709 1.53898 1.61298 1.38324 1.23141 0.97224 0.99550 1.04948 1.84819 1.18454 1.27349 1.64808 1.22423 0.97893 1.12779 1.34413 0.91759 1.25503 0.95439 0.97813 0.96927 1.70003 1.14254 1.26200 1.44712 0.85909 0.81216 0.79414 0.80104 1.18588 1.18085 1.16578 1.74287 1.03343 1.16036 1.19530 0.87379 0.83548 0.88902 0.69993 0.73545 0.91608 0.93556 0.84401 0.88560 0.89181 0.86569 0.87004 0.87220 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.04 11.38 127.77 1.45 1.42 16 2 N -0.30 -3.30 3.72 -373.46 -1.39 -4.69 16 3 C 0.21 1.57 12.62 180.30 2.27 3.84 16 4 N -0.50 -8.27 11.09 -193.03 -2.14 -10.42 16 5 C 0.12 2.89 7.96 137.13 1.09 3.99 16 6 C 0.61 18.03 7.83 86.80 0.68 18.71 16 7 O -0.57 -22.58 17.08 -3.90 -0.07 -22.65 16 8 N -0.68 -15.15 5.55 -465.93 -2.59 -17.73 16 9 C 0.12 3.15 5.47 86.38 0.47 3.62 16 10 C 0.12 2.26 4.07 41.79 0.17 2.43 16 11 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 12 C -0.13 -1.25 8.02 30.93 0.25 -1.00 16 13 C 0.10 1.31 8.42 83.18 0.70 2.01 16 14 N -0.65 -16.61 3.57 -833.70 -2.97 -19.58 16 15 C 0.56 21.10 7.97 87.66 0.70 21.79 16 16 O -0.56 -26.67 15.46 -3.01 -0.05 -26.72 16 17 C -0.10 -3.95 5.99 71.24 0.43 -3.52 16 18 S -0.18 -9.64 18.55 -56.49 -1.05 -10.69 16 19 C -0.53 -31.60 10.04 67.96 0.68 -30.91 16 20 H 0.06 4.02 8.03 -2.91 -0.02 4.00 16 21 C 0.05 2.94 5.50 84.86 0.47 3.41 16 22 N -0.91 -56.50 13.97 21.65 0.30 -56.20 16 23 Si 0.91 46.62 27.74 68.60 1.90 48.52 16 24 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.24 -12.56 6.74 99.48 0.67 -11.89 16 27 N -0.29 -6.78 12.08 -52.44 -0.63 -7.42 16 28 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.15 -1.33 8.14 -2.39 -0.02 -1.35 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 31 H 0.28 -1.70 8.06 -2.91 -0.02 -1.72 16 32 H 0.43 6.36 8.19 -92.71 -0.76 5.60 16 33 H 0.07 1.85 7.89 -2.38 -0.02 1.83 16 34 H 0.05 1.69 7.14 -2.39 -0.02 1.67 16 35 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 36 H 0.10 1.10 7.95 -2.39 -0.02 1.08 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 40 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 41 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -100.11 373.86 0.96 -99.15 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 0.28 Total: 2.65 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 9.36 Total: 25.77 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -9.42 Total: -116.04 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.11 Total: -49.37 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Atomic # 16 Polarization: -9.64 SS G_CDS: -1.05 Total: -10.69 kcal Total: -100.11 0.96 -99.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505699038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.426 kcal (2) G-P(sol) polarization free energy of solvation -100.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds