Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47340 * 2 1 4 4 N 1.46505 * 109.46995 * 120.00008 * 2 1 3 5 5 C 1.34774 * 120.00262 * 275.00272 * 4 2 1 6 6 O 1.21617 * 119.99631 * 359.97438 * 5 4 2 7 7 C 1.47225 * 120.00359 * 180.02562 * 5 4 2 8 8 C 1.37004 * 127.19103 * 180.02562 * 7 5 4 9 9 N 1.33330 * 106.37228 * 179.97438 * 8 7 5 10 10 N 1.28514 * 109.43609 * 359.97438 * 9 8 7 11 11 N 1.28711 * 110.64066 * 0.02562 * 10 9 8 12 12 H 0.97003 * 126.03497 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46926 * 239.99751 * 2 1 3 14 14 C 1.53948 * 113.73768 * 156.67773 * 13 2 1 15 15 N 1.47584 * 86.11415 * 222.04777 * 14 13 2 16 16 C 1.34779 * 134.49099 * 204.63630 * 15 14 13 17 17 O 1.21283 * 119.99847 * 179.97438 * 16 15 14 18 18 C 1.50705 * 120.00138 * 0.02562 * 16 15 14 19 19 S 1.80999 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99603 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00289 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99807 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99895 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46933 * 60.00089 * 24 22 20 26 26 H 1.48505 * 109.47083 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47288 * 299.99997 * 24 22 20 28 28 C 1.47578 * 91.01620 * 24.64033 * 15 14 13 29 29 H 1.09001 * 109.47049 * 60.00090 * 1 2 3 30 30 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 299.99900 * 1 2 3 32 32 H 0.97003 * 119.99414 * 94.99979 * 4 2 1 33 33 H 1.07997 * 126.81790 * 359.97438 * 8 7 5 34 34 H 1.09004 * 112.94661 * 288.40948 * 13 2 1 35 35 H 1.08993 * 113.77204 * 336.34892 * 14 13 2 36 36 H 1.09000 * 113.76856 * 107.74953 * 14 13 2 37 37 H 1.09002 * 109.46738 * 299.99796 * 18 16 15 38 38 H 1.08998 * 109.46947 * 59.99700 * 18 16 15 39 39 H 0.96994 * 119.99649 * 180.02562 * 23 22 20 40 40 H 1.08998 * 113.77006 * 221.05382 * 28 15 14 41 41 H 1.09001 * 113.76914 * 89.66305 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8582 1.1617 2.4117 7 6 2.6383 -0.7122 3.5592 8 6 2.8242 -0.1770 4.8066 9 7 3.2787 -1.1664 5.5761 10 7 3.3740 -2.2415 4.8786 11 7 3.0042 -2.0287 3.6642 12 1 2.9869 -2.6845 2.9497 13 6 2.0400 -0.7213 -1.2492 14 6 3.4666 -0.3146 -1.6606 15 7 2.9583 -0.3120 -3.0462 16 6 3.5238 -0.4653 -4.2600 17 8 2.8381 -0.4148 -5.2591 18 6 5.0079 -0.7007 -4.3756 19 16 5.4583 -0.8659 -6.1209 20 6 7.1943 -1.1245 -5.9656 21 1 7.6524 -1.1417 -4.9877 22 6 7.9732 -1.3062 -7.1001 23 7 7.4149 -1.2847 -8.2920 24 14 9.8136 -1.5796 -6.9355 25 1 10.0623 -2.8022 -6.1300 26 1 10.4120 -1.7459 -8.2844 27 1 10.4297 -0.4087 -6.2611 28 6 1.5823 -0.0740 -2.5689 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.6392 0.8437 5.1070 34 1 1.8827 -1.7993 -1.2114 35 1 3.7641 0.6699 -1.3000 36 1 4.2151 -1.0834 -1.4688 37 1 5.5444 0.1421 -3.9397 38 1 5.2733 -1.6145 -3.8441 39 1 7.9590 -1.4120 -9.0847 40 1 0.8265 -0.6506 -3.1021 41 1 1.3262 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509461147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = 61.159345 kcal Electronic energy + Delta-G solvation = -25663.554769 eV Core-core repulsion = 21708.509579 eV Total energy + Delta-G solvation = -3955.045190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.92779 -40.89182 -39.82909 -37.82766 -35.75411 -34.18816 -32.48420 -32.44610 -31.32922 -30.04092 -28.05387 -26.33218 -25.49658 -25.38297 -23.95115 -23.17307 -21.53731 -21.22688 -19.72102 -19.19119 -17.80441 -17.45145 -17.09783 -16.92809 -16.67088 -15.79901 -15.59109 -15.32505 -14.96989 -14.85325 -14.78076 -14.28023 -14.14729 -13.78107 -13.21889 -13.05780 -12.90894 -12.77569 -12.65830 -12.53547 -12.18627 -11.92447 -11.86218 -11.39009 -11.35098 -11.22405 -11.09527 -11.08194 -10.83291 -10.79103 -10.16594 -9.88756 -9.86728 -9.44984 -9.11158 -8.73065 -8.31188 -6.56992 -6.26733 -3.98306 0.27562 1.72730 1.80712 2.22956 2.45246 2.61945 2.95530 3.18905 3.19590 3.24932 3.46799 3.66955 3.82175 4.03300 4.14901 4.18256 4.37265 4.45593 4.56359 4.57089 4.79309 4.85012 4.94084 5.08347 5.11007 5.16003 5.18198 5.36635 5.38311 5.41068 5.48213 5.61425 5.69713 5.77810 5.85054 5.91548 5.95094 6.05551 6.61908 7.33327 7.53799 7.67323 7.68747 8.29554 8.43787 9.18270 10.80640 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.002118 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.434675 B =13216.489120 C =14876.901244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.153 3.847 3 H 0.101 0.899 4 N -0.719 5.719 5 C 0.599 3.401 6 O -0.508 6.508 7 C -0.069 4.069 8 C 0.036 3.964 9 N -0.269 5.269 10 N -0.043 5.043 11 N -0.374 5.374 12 H 0.451 0.549 13 C -0.136 4.136 14 C 0.108 3.892 15 N -0.652 5.652 16 C 0.556 3.444 17 O -0.513 6.513 18 C -0.145 4.145 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 C 0.121 3.879 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.206 0.794 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 -0.404 24.253 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.119 0.881 4 N -0.371 5.371 5 C 0.382 3.618 6 O -0.381 6.381 7 C -0.203 4.203 8 C -0.124 4.124 9 N -0.134 5.134 10 N -0.025 5.025 11 N -0.102 5.102 12 H 0.298 0.702 13 C -0.155 4.155 14 C -0.015 4.015 15 N -0.391 5.391 16 C 0.346 3.654 17 O -0.386 6.386 18 C -0.296 4.296 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.199 1.199 28 C -0.002 4.002 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.222 0.778 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.066 -0.415 23.441 27.341 hybrid contribution 1.783 -0.403 0.013 1.828 sum -12.283 -0.817 23.454 26.489 Atomic orbital electron populations 1.22189 0.94096 1.02736 1.03364 1.21096 0.94825 0.97483 0.81726 0.88095 1.45970 1.67569 1.13815 1.09726 1.16715 0.77824 0.86170 0.81114 1.90904 1.49169 1.14187 1.83849 1.22382 1.12934 0.85805 0.99211 1.23980 0.98983 1.01265 0.88123 1.75057 1.16399 0.95949 1.25981 1.78276 1.15091 1.20658 0.88470 1.45626 1.43310 1.09592 1.11623 0.70214 1.23543 0.96898 1.01547 0.93548 1.23227 0.96074 1.01926 0.80305 1.49977 1.09927 1.74100 1.05107 1.20065 0.89575 0.75105 0.80678 1.90722 1.63956 1.49181 1.34760 1.23475 0.93261 1.04475 1.08367 1.85415 1.07962 1.94176 0.95756 1.22802 0.92528 1.57516 0.95634 0.91003 1.25001 0.99516 0.94594 0.94451 1.70005 1.36351 1.46174 0.97673 0.86213 0.82796 0.78880 0.77552 1.19938 1.20746 1.19907 1.23002 0.86535 1.00686 0.89994 0.90677 0.92062 0.91656 0.76975 0.77767 0.87286 0.89543 0.89838 0.89358 0.89420 0.92061 0.89598 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 9.29 37.16 0.35 -0.40 16 2 C 0.15 0.71 2.42 -67.93 -0.16 0.55 16 3 H 0.10 0.62 7.37 -51.93 -0.38 0.24 16 4 N -0.72 -2.60 5.07 -54.95 -0.28 -2.88 16 5 C 0.60 3.73 7.77 -12.61 -0.10 3.63 16 6 O -0.51 -4.95 16.59 5.26 0.09 -4.86 16 7 C -0.07 -0.40 7.17 -82.34 -0.59 -0.99 16 8 C 0.04 0.26 11.87 -17.35 -0.21 0.05 16 9 N -0.27 -2.43 12.35 30.47 0.38 -2.05 16 10 N -0.04 -0.33 13.35 60.35 0.81 0.47 16 11 N -0.37 -1.62 6.97 33.31 0.23 -1.39 16 12 H 0.45 0.13 8.32 -190.33 -1.58 -1.46 16 13 C -0.14 -0.73 3.50 -89.69 -0.31 -1.05 16 14 C 0.11 0.86 8.17 -2.97 -0.02 0.83 16 15 N -0.65 -8.25 3.61 -178.36 -0.64 -8.90 16 16 C 0.56 10.30 8.08 -10.98 -0.09 10.21 16 17 O -0.51 -11.65 16.59 5.55 0.09 -11.56 16 18 C -0.15 -2.90 5.91 36.01 0.21 -2.68 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 24 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.12 1.05 7.46 -2.98 -0.02 1.03 16 29 H 0.07 0.32 7.43 -51.93 -0.39 -0.07 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 0.30 7.87 -40.82 -0.32 -0.02 16 33 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.63 7.96 -51.93 -0.41 0.22 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -38.92 373.97 -7.38 -46.29 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -6.43 Total: -6.28 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.75 Total: -1.63 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 1.23 Total: -39.89 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.92 -7.38 -46.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509461147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.454 kcal (2) G-P(sol) polarization free energy of solvation -38.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds