Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47340 * 2 1 4 4 N 1.46505 * 109.46995 * 120.00008 * 2 1 3 5 5 C 1.34774 * 120.00262 * 275.00272 * 4 2 1 6 6 O 1.21617 * 119.99631 * 359.97438 * 5 4 2 7 7 C 1.47225 * 120.00359 * 180.02562 * 5 4 2 8 8 C 1.37004 * 127.19103 * 180.02562 * 7 5 4 9 9 N 1.33330 * 106.37228 * 179.97438 * 8 7 5 10 10 N 1.28514 * 109.43609 * 359.97438 * 9 8 7 11 11 N 1.28711 * 110.64066 * 0.02562 * 10 9 8 12 12 H 0.97003 * 126.03497 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46926 * 239.99751 * 2 1 3 14 14 C 1.53948 * 113.73768 * 156.67773 * 13 2 1 15 15 N 1.47584 * 86.11415 * 222.04777 * 14 13 2 16 16 C 1.34779 * 134.49099 * 204.63630 * 15 14 13 17 17 O 1.21283 * 119.99847 * 179.97438 * 16 15 14 18 18 C 1.50705 * 120.00138 * 0.02562 * 16 15 14 19 19 S 1.80999 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99603 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00289 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99807 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99895 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46933 * 60.00089 * 24 22 20 26 26 H 1.48505 * 109.47083 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47288 * 299.99997 * 24 22 20 28 28 C 1.47578 * 91.01620 * 24.64033 * 15 14 13 29 29 H 1.09001 * 109.47049 * 60.00090 * 1 2 3 30 30 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 299.99900 * 1 2 3 32 32 H 0.97003 * 119.99414 * 94.99979 * 4 2 1 33 33 H 1.07997 * 126.81790 * 359.97438 * 8 7 5 34 34 H 1.09004 * 112.94661 * 288.40948 * 13 2 1 35 35 H 1.08993 * 113.77204 * 336.34892 * 14 13 2 36 36 H 1.09000 * 113.76856 * 107.74953 * 14 13 2 37 37 H 1.09002 * 109.46738 * 299.99796 * 18 16 15 38 38 H 1.08998 * 109.46947 * 59.99700 * 18 16 15 39 39 H 0.96994 * 119.99649 * 180.02562 * 23 22 20 40 40 H 1.08998 * 113.77006 * 221.05382 * 28 15 14 41 41 H 1.09001 * 113.76914 * 89.66305 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8582 1.1617 2.4117 7 6 2.6383 -0.7122 3.5592 8 6 2.8242 -0.1770 4.8066 9 7 3.2787 -1.1664 5.5761 10 7 3.3740 -2.2415 4.8786 11 7 3.0042 -2.0287 3.6642 12 1 2.9869 -2.6845 2.9497 13 6 2.0400 -0.7213 -1.2492 14 6 3.4666 -0.3146 -1.6606 15 7 2.9583 -0.3120 -3.0462 16 6 3.5238 -0.4653 -4.2600 17 8 2.8381 -0.4148 -5.2591 18 6 5.0079 -0.7007 -4.3756 19 16 5.4583 -0.8659 -6.1209 20 6 7.1943 -1.1245 -5.9656 21 1 7.6524 -1.1417 -4.9877 22 6 7.9732 -1.3062 -7.1001 23 7 7.4149 -1.2847 -8.2920 24 14 9.8136 -1.5796 -6.9355 25 1 10.0623 -2.8022 -6.1300 26 1 10.4120 -1.7459 -8.2844 27 1 10.4297 -0.4087 -6.2611 28 6 1.5823 -0.0740 -2.5689 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.6392 0.8437 5.1070 34 1 1.8827 -1.7993 -1.2114 35 1 3.7641 0.6699 -1.3000 36 1 4.2151 -1.0834 -1.4688 37 1 5.5444 0.1421 -3.9397 38 1 5.2733 -1.6145 -3.8441 39 1 7.9590 -1.4120 -9.0847 40 1 0.8265 -0.6506 -3.1021 41 1 1.3262 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509461147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = 29.730378 kcal Electronic energy + Delta-G solvation = -25664.917631 eV Core-core repulsion = 21708.509579 eV Total energy + Delta-G solvation = -3956.408052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -44.42489 -41.63478 -40.58040 -39.01689 -36.37840 -34.70568 -34.60675 -33.03492 -32.13930 -31.08271 -29.00125 -27.71788 -27.02306 -25.90748 -24.53264 -23.76427 -22.09519 -21.74030 -20.56786 -20.05274 -19.54378 -18.13469 -17.91866 -17.55516 -17.41592 -16.91860 -16.83532 -16.67501 -16.00975 -15.83643 -15.66416 -15.33322 -14.93171 -14.70304 -14.61364 -14.06991 -13.77243 -13.62118 -13.37558 -13.32273 -13.20280 -13.06991 -12.88159 -12.73216 -12.63862 -12.38666 -11.89176 -11.85860 -11.83491 -11.76984 -11.38924 -11.14930 -10.93412 -10.68297 -10.31848 -10.23761 -9.77288 -8.70657 -8.36626 -6.15724 -0.20197 1.18378 1.19854 1.41120 1.42538 1.42757 1.52077 1.55858 1.82286 1.95838 1.97892 2.25500 2.97416 3.13634 3.21568 3.30562 3.58119 3.62422 3.67871 3.91016 4.05830 4.09448 4.11195 4.22714 4.36717 4.42658 4.46324 4.50203 4.57353 4.68328 4.76920 4.88471 4.93356 5.00535 5.13626 5.34365 5.38981 5.39211 5.67366 6.17249 6.26722 6.55086 6.91631 7.04295 7.09369 7.16083 8.72359 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.002118 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.434675 B =13216.489120 C =14876.901244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.091 0.909 4 N -0.702 5.702 5 C 0.605 3.395 6 O -0.545 6.545 7 C -0.061 4.061 8 C 0.024 3.976 9 N -0.300 5.300 10 N -0.062 5.062 11 N -0.348 5.348 12 H 0.469 0.531 13 C -0.104 4.104 14 C 0.101 3.899 15 N -0.650 5.650 16 C 0.552 3.448 17 O -0.570 6.570 18 C -0.119 4.119 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.263 1.263 28 C 0.112 3.888 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.216 0.784 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.272 0.728 40 H 0.084 0.916 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 -1.231 26.422 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.109 0.891 4 N -0.354 5.354 5 C 0.389 3.611 6 O -0.420 6.420 7 C -0.196 4.196 8 C -0.136 4.136 9 N -0.165 5.165 10 N -0.044 5.044 11 N -0.079 5.079 12 H 0.320 0.680 13 C -0.123 4.123 14 C -0.021 4.021 15 N -0.387 5.387 16 C 0.342 3.658 17 O -0.449 6.449 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.011 4.011 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.233 0.767 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.573 -1.295 25.676 29.072 hybrid contribution 1.493 -0.115 -0.554 1.597 sum -12.079 -1.410 25.122 27.911 Atomic orbital electron populations 1.22168 0.93563 1.03515 1.02949 1.20938 0.95068 0.96904 0.81456 0.89133 1.45777 1.66467 1.14571 1.08609 1.16652 0.77329 0.85617 0.81507 1.90901 1.50894 1.15813 1.84380 1.22241 1.12592 0.86102 0.98688 1.24290 0.98987 1.01703 0.88597 1.75033 1.17686 0.96649 1.27105 1.78210 1.16019 1.20605 0.89537 1.45577 1.41491 1.09495 1.11297 0.68022 1.23318 0.94394 1.02595 0.92013 1.23643 0.98045 1.03380 0.77031 1.50006 1.12350 1.71445 1.04886 1.19742 0.88686 0.75459 0.81954 1.90694 1.64700 1.52270 1.37195 1.23269 0.95082 1.05933 1.02727 1.85601 1.09035 1.94541 1.03358 1.23141 0.92602 1.57353 0.96317 0.89946 1.26146 1.05156 0.93965 0.93900 1.70176 1.38468 1.47391 0.98658 0.84999 0.75734 0.79422 0.77816 1.18512 1.20390 1.18725 1.23360 0.84506 1.02021 0.91170 0.90363 0.90696 0.92904 0.74895 0.76723 0.84936 0.88397 0.88235 0.87994 0.87469 0.91944 0.89744 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.29 71.98 0.67 -0.32 16 2 C 0.16 0.96 2.42 44.99 0.11 1.06 16 3 H 0.09 0.85 7.37 -2.39 -0.02 0.83 16 4 N -0.70 -2.54 5.07 -446.00 -2.26 -4.80 16 5 C 0.61 6.03 7.77 86.61 0.67 6.70 16 6 O -0.54 -9.71 16.59 -4.09 -0.07 -9.77 16 7 C -0.06 -0.58 7.17 40.40 0.29 -0.29 16 8 C 0.02 0.32 11.87 84.18 1.00 1.32 16 9 N -0.30 -5.18 12.35 -57.50 -0.71 -5.89 16 10 N -0.06 -0.87 13.35 37.02 0.49 -0.38 16 11 N -0.35 -2.15 6.97 -48.53 -0.34 -2.49 16 12 H 0.47 -1.31 8.32 -219.90 -1.83 -3.14 16 13 C -0.10 -0.71 3.50 -10.13 -0.04 -0.75 16 14 C 0.10 1.23 8.17 86.48 0.71 1.93 16 15 N -0.65 -15.08 3.61 -836.60 -3.02 -18.10 16 16 C 0.55 20.22 8.08 87.66 0.71 20.93 16 17 O -0.57 -26.59 16.59 -3.04 -0.05 -26.64 16 18 C -0.12 -4.67 5.91 71.24 0.42 -4.25 16 19 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 20 C -0.55 -30.86 9.50 67.96 0.65 -30.21 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 24 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 28 C 0.11 1.65 7.46 86.48 0.64 2.30 16 29 H 0.08 0.45 7.43 -2.39 -0.02 0.43 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.41 -1.27 7.87 -92.71 -0.73 -2.00 16 33 H 0.22 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 1.07 7.96 -2.39 -0.02 1.05 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.26 8.06 -2.39 -0.02 1.24 16 Total: -1.00 -89.07 373.97 0.03 -89.04 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -1.46 Total: -0.71 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.29 Total: -0.36 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -5.55 Total: -86.94 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.12 Total: -36.42 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -89.07 0.03 -89.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509461147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.770 kcal (2) G-P(sol) polarization free energy of solvation -89.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds