Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34584 * 125.74668 * 2 1 4 4 N 1.30868 * 107.62357 * 179.97438 * 3 2 1 5 5 C 1.34552 * 107.26947 * 0.02562 * 4 3 2 6 6 C 1.47870 * 126.04709 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99825 * 180.02562 * 6 5 4 8 8 N 1.34779 * 120.00058 * 359.97438 * 6 5 4 9 9 C 1.46500 * 119.99708 * 180.02562 * 8 6 5 10 10 H 1.09008 * 110.88915 * 325.69842 * 9 8 6 11 11 C 1.55156 * 111.00253 * 201.82298 * 9 8 6 12 12 C 1.54375 * 102.92153 * 206.45095 * 11 9 8 13 13 N 1.47025 * 107.28529 * 22.13748 * 12 11 9 14 14 C 1.34774 * 125.64321 * 181.05940 * 13 12 11 15 15 O 1.21288 * 119.99482 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00335 * 0.03576 * 14 13 12 17 17 S 1.81006 * 109.47261 * 180.02562 * 16 14 13 18 18 C 1.76192 * 100.00029 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00359 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00203 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99622 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00290 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46936 * 60.00111 * 22 20 18 24 24 H 1.48504 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47162 * 300.00113 * 22 20 18 26 26 C 1.47418 * 108.70506 * 1.09267 * 13 12 11 27 27 N 1.28842 * 125.74871 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46898 * 89.99783 * 1 2 3 29 29 H 1.08995 * 109.47241 * 210.00271 * 1 2 3 30 30 H 1.09002 * 109.46807 * 330.00306 * 1 2 3 31 31 H 1.08002 * 126.19207 * 359.70368 * 3 2 1 32 32 H 0.96991 * 120.00122 * 0.02562 * 8 6 5 33 33 H 1.09001 * 110.72147 * 324.78295 * 11 9 8 34 34 H 1.09003 * 110.72415 * 88.05989 * 11 9 8 35 35 H 1.08997 * 109.84258 * 262.72950 * 12 11 9 36 36 H 1.08998 * 110.02845 * 141.64956 * 12 11 9 37 37 H 1.08998 * 109.47382 * 300.00498 * 16 14 13 38 38 H 1.09005 * 109.46792 * 60.00557 * 16 14 13 39 39 H 0.96998 * 120.00135 * 179.97438 * 21 20 18 40 40 H 1.09005 * 110.36904 * 217.03592 * 26 13 12 41 41 H 1.08998 * 110.46503 * 94.75619 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 0.0006 5 6 3.4750 -0.6602 0.0003 6 6 4.6574 -1.5480 0.0013 7 8 4.5114 -2.7547 0.0005 8 7 5.8972 -1.0192 0.0020 9 6 7.0687 -1.8989 0.0025 10 1 6.8740 -2.8052 0.5761 11 6 8.3205 -1.1577 0.5417 12 6 9.4856 -1.9070 -0.1397 13 7 8.9411 -2.5656 -1.3362 14 6 9.6378 -3.3378 -2.1933 15 8 9.0832 -3.8323 -3.1520 16 6 11.1056 -3.5873 -1.9603 17 16 11.7523 -4.6526 -3.2730 18 6 13.4349 -4.7769 -2.7651 19 1 13.7686 -4.2679 -1.8729 20 6 14.3312 -5.5297 -3.5110 21 7 13.9241 -6.1512 -4.5975 22 14 16.1152 -5.6609 -2.9729 23 1 16.1803 -6.2646 -1.6176 24 1 16.8599 -6.5162 -3.9316 25 1 16.7235 -4.3066 -2.9412 26 6 7.5072 -2.2405 -1.4435 27 7 2.2177 -1.0457 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9164 2.1191 -0.0045 32 1 6.0137 -0.0564 0.0023 33 1 8.3078 -0.1101 0.2409 34 1 8.3849 -1.2480 1.6261 35 1 9.8937 -2.6539 0.5412 36 1 10.2655 -1.2020 -0.4272 37 1 11.6410 -2.6379 -1.9666 38 1 11.2425 -4.0753 -0.9953 39 1 14.5506 -6.6770 -5.1190 40 1 6.9501 -3.1004 -1.8157 41 1 7.3591 -1.3814 -2.0977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523006755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = 35.647736 kcal Electronic energy + Delta-G solvation = -25541.655302 eV Core-core repulsion = 21585.503845 eV Total energy + Delta-G solvation = -3956.151456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.91526 -40.31565 -39.19905 -37.21367 -35.14881 -34.38691 -32.39559 -32.24062 -31.10114 -29.65887 -28.74150 -27.57051 -25.46632 -24.64124 -23.38400 -22.72081 -21.34211 -20.87466 -19.35142 -18.63797 -17.69353 -17.28221 -17.00746 -16.88173 -16.46592 -15.86490 -15.34835 -15.02956 -14.82017 -14.76522 -14.31601 -14.12427 -13.85845 -13.79063 -13.67597 -13.53083 -12.95838 -12.61407 -12.51625 -12.42660 -11.98860 -11.86294 -11.68929 -11.11039 -11.01026 -11.00643 -10.96062 -10.92815 -10.74676 -10.57243 -10.06109 -9.80230 -9.54300 -9.31291 -9.02561 -8.47779 -8.19557 -6.46462 -6.17884 -3.88554 0.95669 1.60978 1.65829 2.52321 2.98855 3.02991 3.11468 3.26167 3.28850 3.32041 3.60184 3.67950 3.84649 4.13150 4.23415 4.27097 4.37289 4.40940 4.55529 4.68819 4.70599 4.99168 5.10093 5.12867 5.17003 5.45828 5.46164 5.53007 5.64020 5.69741 5.74154 5.79458 5.87026 5.94543 5.97354 6.08371 6.17661 6.43813 7.03591 7.52471 7.62414 7.68491 7.83613 8.38420 8.59548 9.26963 10.89505 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.001756 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.072834 B =15939.296395 C =16342.869574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.304 5.304 3 C 0.192 3.808 4 N -0.485 5.485 5 C 0.142 3.858 6 C 0.618 3.382 7 O -0.509 6.509 8 N -0.699 5.699 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.135 4.135 12 C 0.104 3.896 13 N -0.625 5.625 14 C 0.549 3.451 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.098 3.902 27 N -0.249 5.249 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.228 0.772 32 H 0.412 0.588 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.796 20.463 14.923 36.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.100 5.100 3 C -0.103 4.103 4 N -0.211 5.211 5 C -0.138 4.138 6 C 0.399 3.601 7 O -0.380 6.380 8 N -0.352 5.352 9 C 0.028 3.972 10 H 0.129 0.871 11 C -0.174 4.174 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.338 3.662 15 O -0.386 6.386 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.027 4.027 27 N -0.089 5.089 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.244 0.756 32 H 0.249 0.751 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.523 18.166 13.274 34.781 hybrid contribution 1.455 1.404 1.441 2.483 sum -25.068 19.570 14.715 35.042 Atomic orbital electron populations 1.22297 0.71968 1.06131 1.05246 1.47415 1.09490 1.03815 1.49259 1.26507 0.85788 0.96048 1.01973 1.71254 1.20569 1.09270 1.19998 1.23670 0.92151 0.89470 1.08469 1.16263 0.81056 0.85874 0.76879 1.90887 1.85460 1.13443 1.48198 1.45480 1.04048 1.10955 1.74746 1.22186 0.83736 0.94474 0.96797 0.87135 1.22936 0.92921 1.00054 1.01449 1.21975 0.96252 0.96655 0.87070 1.48386 1.09561 1.51347 1.27079 1.20048 0.88384 0.76652 0.81161 1.90723 1.70754 1.48552 1.28594 1.23505 0.93521 1.05645 1.06991 1.85431 1.07926 1.60435 1.29577 1.22824 0.94468 1.36864 1.14250 0.90959 1.24990 0.99344 0.94644 0.94578 1.70010 1.35619 1.29894 1.14742 0.86223 0.82517 0.78251 0.78489 1.19944 1.20826 1.19953 1.22484 0.82295 1.01864 0.96054 1.74373 1.02820 1.13308 1.18365 0.88915 0.88018 0.87824 0.75591 0.75125 0.89650 0.88982 0.90746 0.90673 0.89232 0.89180 0.92139 0.89670 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.07 11.38 59.85 0.68 0.75 16 2 N -0.30 -1.86 3.72 -69.39 -0.26 -2.11 16 3 C 0.19 0.99 12.62 -90.48 -1.14 -0.16 16 4 N -0.49 -4.25 11.09 -12.36 -0.14 -4.39 16 5 C 0.14 1.61 7.96 -156.35 -1.24 0.37 16 6 C 0.62 7.77 7.83 -12.32 -0.10 7.68 16 7 O -0.51 -8.29 16.78 5.32 0.09 -8.20 16 8 N -0.70 -6.72 5.21 -52.66 -0.27 -6.99 16 9 C 0.13 1.37 3.37 -65.78 -0.22 1.15 16 10 H 0.11 1.28 7.63 -51.92 -0.40 0.88 16 11 C -0.14 -1.00 6.59 -24.87 -0.16 -1.17 16 12 C 0.10 1.08 6.49 -3.04 -0.02 1.06 16 13 N -0.63 -9.45 3.33 -170.49 -0.57 -10.02 16 14 C 0.55 11.10 7.87 -10.99 -0.09 11.01 16 15 O -0.51 -12.55 16.12 5.55 0.09 -12.46 16 16 C -0.15 -3.07 5.35 36.00 0.19 -2.88 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 22 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.10 1.33 6.60 -2.53 -0.02 1.31 16 27 N -0.25 -2.73 12.08 32.07 0.39 -2.34 16 28 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 29 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 31 H 0.23 -0.05 8.06 -52.49 -0.42 -0.48 16 32 H 0.41 3.07 8.25 -40.82 -0.34 2.74 16 33 H 0.08 0.50 8.00 -51.93 -0.42 0.08 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -41.67 373.40 -8.80 -50.47 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.34 Total: -2.49 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.92 Total: 5.99 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.12 Total: -51.63 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.18 Total: -20.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.67 -8.80 -50.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523006755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.116 kcal (2) G-P(sol) polarization free energy of solvation -41.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds