Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34584 * 125.74668 * 2 1 4 4 N 1.30868 * 107.62357 * 179.97438 * 3 2 1 5 5 C 1.34552 * 107.26947 * 0.02562 * 4 3 2 6 6 C 1.47870 * 126.04709 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99825 * 180.02562 * 6 5 4 8 8 N 1.34779 * 120.00058 * 359.97438 * 6 5 4 9 9 C 1.46500 * 119.99708 * 180.02562 * 8 6 5 10 10 H 1.09008 * 110.88915 * 325.69842 * 9 8 6 11 11 C 1.55156 * 111.00253 * 201.82298 * 9 8 6 12 12 C 1.54375 * 102.92153 * 206.45095 * 11 9 8 13 13 N 1.47025 * 107.28529 * 22.13748 * 12 11 9 14 14 C 1.34774 * 125.64321 * 181.05940 * 13 12 11 15 15 O 1.21288 * 119.99482 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00335 * 0.03576 * 14 13 12 17 17 S 1.81006 * 109.47261 * 180.02562 * 16 14 13 18 18 C 1.76192 * 100.00029 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00359 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00203 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99622 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00290 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46936 * 60.00111 * 22 20 18 24 24 H 1.48504 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47162 * 300.00113 * 22 20 18 26 26 C 1.47418 * 108.70506 * 1.09267 * 13 12 11 27 27 N 1.28842 * 125.74871 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46898 * 89.99783 * 1 2 3 29 29 H 1.08995 * 109.47241 * 210.00271 * 1 2 3 30 30 H 1.09002 * 109.46807 * 330.00306 * 1 2 3 31 31 H 1.08002 * 126.19207 * 359.70368 * 3 2 1 32 32 H 0.96991 * 120.00122 * 0.02562 * 8 6 5 33 33 H 1.09001 * 110.72147 * 324.78295 * 11 9 8 34 34 H 1.09003 * 110.72415 * 88.05989 * 11 9 8 35 35 H 1.08997 * 109.84258 * 262.72950 * 12 11 9 36 36 H 1.08998 * 110.02845 * 141.64956 * 12 11 9 37 37 H 1.08998 * 109.47382 * 300.00498 * 16 14 13 38 38 H 1.09005 * 109.46792 * 60.00557 * 16 14 13 39 39 H 0.96998 * 120.00135 * 179.97438 * 21 20 18 40 40 H 1.09005 * 110.36904 * 217.03592 * 26 13 12 41 41 H 1.08998 * 110.46503 * 94.75619 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 0.0006 5 6 3.4750 -0.6602 0.0003 6 6 4.6574 -1.5480 0.0013 7 8 4.5114 -2.7547 0.0005 8 7 5.8972 -1.0192 0.0020 9 6 7.0687 -1.8989 0.0025 10 1 6.8740 -2.8052 0.5761 11 6 8.3205 -1.1577 0.5417 12 6 9.4856 -1.9070 -0.1397 13 7 8.9411 -2.5656 -1.3362 14 6 9.6378 -3.3378 -2.1933 15 8 9.0832 -3.8323 -3.1520 16 6 11.1056 -3.5873 -1.9603 17 16 11.7523 -4.6526 -3.2730 18 6 13.4349 -4.7769 -2.7651 19 1 13.7686 -4.2679 -1.8729 20 6 14.3312 -5.5297 -3.5110 21 7 13.9241 -6.1512 -4.5975 22 14 16.1152 -5.6609 -2.9729 23 1 16.1803 -6.2646 -1.6176 24 1 16.8599 -6.5162 -3.9316 25 1 16.7235 -4.3066 -2.9412 26 6 7.5072 -2.2405 -1.4435 27 7 2.2177 -1.0457 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9164 2.1191 -0.0045 32 1 6.0137 -0.0564 0.0023 33 1 8.3078 -0.1101 0.2409 34 1 8.3849 -1.2480 1.6261 35 1 9.8937 -2.6539 0.5412 36 1 10.2655 -1.2020 -0.4272 37 1 11.6410 -2.6379 -1.9666 38 1 11.2425 -4.0753 -0.9953 39 1 14.5506 -6.6770 -5.1190 40 1 6.9501 -3.1004 -1.8157 41 1 7.3591 -1.3814 -2.0977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523006755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 3.436289 kcal Electronic energy + Delta-G solvation = -25543.052095 eV Core-core repulsion = 21585.503845 eV Total energy + Delta-G solvation = -3957.548249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.46319 -41.40304 -40.43787 -38.49599 -35.76943 -35.28925 -34.57905 -32.81329 -32.32177 -30.87541 -29.58322 -28.34864 -27.63365 -25.46845 -24.33341 -23.24585 -22.14624 -21.73267 -20.75698 -19.70773 -19.20368 -18.17338 -17.91860 -17.77415 -17.36154 -16.89010 -16.85571 -16.60142 -16.09107 -15.83103 -15.62680 -15.30966 -15.03450 -14.55245 -14.39864 -14.22592 -13.98207 -13.93575 -13.84667 -13.43203 -13.15831 -12.87819 -12.85130 -12.82347 -12.64968 -12.62037 -11.89969 -11.75841 -11.60225 -11.54232 -11.45895 -11.11799 -11.06033 -10.67194 -10.34718 -10.27968 -9.74543 -8.68438 -8.33442 -6.12958 0.24706 1.07985 1.15325 1.28197 1.45235 1.45600 1.52427 1.55713 1.85550 2.16111 2.19543 2.28355 3.00613 3.03769 3.19783 3.38067 3.46674 3.54195 3.86364 3.90233 3.95566 4.14893 4.22370 4.30646 4.34688 4.40757 4.44661 4.59351 4.69904 4.70534 4.76447 4.83113 4.93055 5.04061 5.17849 5.28451 5.35682 5.42254 5.64063 6.20447 6.24190 6.32821 6.87625 7.04552 7.06463 7.07300 8.75744 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.001756 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.072834 B =15939.296395 C =16342.869574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.209 3.791 4 N -0.503 5.503 5 C 0.115 3.885 6 C 0.614 3.386 7 O -0.560 6.560 8 N -0.679 5.679 9 C 0.141 3.859 10 H 0.096 0.904 11 C -0.114 4.114 12 C 0.090 3.910 13 N -0.615 5.615 14 C 0.545 3.455 15 O -0.571 6.571 16 C -0.116 4.116 17 S -0.157 6.157 18 C -0.546 4.546 19 H 0.086 0.914 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 1.001 2.999 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.260 1.260 26 C 0.095 3.905 27 N -0.289 5.289 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.282 0.718 32 H 0.426 0.574 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.047 0.953 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.665 24.159 17.732 39.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.095 5.095 3 C -0.086 4.086 4 N -0.230 5.230 5 C -0.163 4.163 6 C 0.397 3.603 7 O -0.435 6.435 8 N -0.333 5.333 9 C 0.035 3.965 10 H 0.114 0.886 11 C -0.152 4.152 12 C -0.031 4.031 13 N -0.351 5.351 14 C 0.333 3.667 15 O -0.449 6.449 16 C -0.267 4.267 17 S 0.070 5.930 18 C -0.693 4.693 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.184 1.184 26 C -0.030 4.030 27 N -0.131 5.131 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.298 0.702 32 H 0.265 0.735 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.420 21.954 16.145 37.956 hybrid contribution 1.172 0.398 0.613 1.381 sum -25.248 22.352 16.758 37.655 Atomic orbital electron populations 1.22776 0.69128 1.07986 1.06648 1.47807 1.10946 1.03023 1.47752 1.27546 0.84540 0.97606 0.98900 1.71202 1.22831 1.07782 1.21151 1.23400 0.91814 0.90462 1.10658 1.16617 0.82230 0.85526 0.75954 1.90849 1.86306 1.15616 1.50728 1.45317 1.03035 1.11480 1.73418 1.22029 0.85245 0.95001 0.94191 0.88564 1.22962 0.88991 1.00473 1.02805 1.22447 0.97957 0.97402 0.85330 1.48292 1.10060 1.49517 1.27182 1.19919 0.88257 0.77169 0.81342 1.90699 1.71614 1.51288 1.31328 1.23287 0.93969 1.04967 1.04524 1.85680 1.09646 1.63323 1.34326 1.23172 0.94261 1.37167 1.14745 0.89607 1.26174 1.04817 0.93867 0.94368 1.70191 1.37543 1.30877 1.16288 0.84965 0.75568 0.78865 0.78341 1.18600 1.20496 1.18427 1.22571 0.81110 1.00574 0.98716 1.74281 1.03354 1.15957 1.19478 0.87691 0.88667 0.83534 0.70227 0.73487 0.86971 0.85932 0.89598 0.88713 0.86866 0.87174 0.92012 0.93465 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.06 11.38 127.77 1.45 1.39 16 2 N -0.30 -3.12 3.72 -373.46 -1.39 -4.51 16 3 C 0.21 1.51 12.62 180.30 2.27 3.78 16 4 N -0.50 -7.97 11.09 -193.03 -2.14 -10.11 16 5 C 0.12 2.63 7.96 137.13 1.09 3.72 16 6 C 0.61 16.00 7.83 86.79 0.68 16.68 16 7 O -0.56 -19.57 16.78 -3.88 -0.07 -19.63 16 8 N -0.68 -12.58 5.21 -438.79 -2.29 -14.87 16 9 C 0.14 2.78 3.37 46.38 0.16 2.93 16 10 H 0.10 2.24 7.63 -2.38 -0.02 2.22 16 11 C -0.11 -1.27 6.59 31.80 0.21 -1.06 16 12 C 0.09 1.60 6.49 86.75 0.56 2.16 16 13 N -0.62 -18.26 3.33 -811.71 -2.70 -20.96 16 14 C 0.54 22.45 7.87 87.66 0.69 23.14 16 15 O -0.57 -29.58 16.12 -3.05 -0.05 -29.63 16 16 C -0.12 -4.86 5.35 71.23 0.38 -4.48 16 17 S -0.16 -9.05 20.57 -56.49 -1.16 -10.21 16 18 C -0.55 -31.65 9.50 67.96 0.65 -31.00 16 19 H 0.09 4.56 7.80 -2.91 -0.02 4.54 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 22 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 26 C 0.09 2.64 6.60 86.86 0.57 3.21 16 27 N -0.29 -6.37 12.08 -52.44 -0.63 -7.00 16 28 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.15 -1.38 8.14 -2.39 -0.02 -1.40 16 31 H 0.28 -1.62 8.06 -2.91 -0.02 -1.64 16 32 H 0.43 5.53 8.25 -92.71 -0.76 4.76 16 33 H 0.11 0.74 8.00 -2.39 -0.02 0.72 16 34 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 38 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 39 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.05 1.68 8.04 -2.38 -0.02 1.66 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -99.61 373.40 1.38 -98.24 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.31 Total: 7.88 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 9.18 Total: 21.66 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -8.86 Total: -114.33 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.11 Total: -49.26 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.16 Total: -10.21 kcal Total: -99.61 1.38 -98.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523006755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.673 kcal (2) G-P(sol) polarization free energy of solvation -99.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds