Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00008 * 2 1 4 4 H 1.48498 * 109.46846 * 269.99592 * 3 2 1 5 5 H 1.48498 * 109.46982 * 30.00025 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99944 * 3 2 1 7 7 C 1.37878 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00461 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47042 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46917 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00147 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99713 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99854 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47137 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.47069 * 59.99470 * 16 15 14 18 18 O 1.42900 * 109.46975 * 299.99395 * 16 15 14 19 19 C 1.35942 * 117.00056 * 155.19285 * 18 16 15 20 20 C 1.38706 * 120.02897 * 5.50207 * 19 18 16 21 21 C 1.38151 * 119.96999 * 179.97438 * 20 19 18 22 22 C 1.38452 * 120.03284 * 0.25785 * 21 20 19 23 23 F 1.35099 * 119.97530 * 179.72124 * 22 21 20 24 24 C 1.38461 * 120.05657 * 359.49118 * 22 21 20 25 25 C 1.38152 * 120.03131 * 0.50799 * 24 22 21 26 26 C 1.50702 * 109.46880 * 179.97438 * 16 15 14 27 27 O 1.20825 * 120.00331 * 120.00391 * 26 16 15 28 28 O 1.34229 * 119.99796 * 299.99485 * 26 16 15 29 29 H 0.97003 * 120.00162 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47008 * 59.99547 * 9 7 2 31 31 H 1.08998 * 109.47236 * 299.99644 * 9 7 2 32 32 H 1.09004 * 109.47176 * 59.99740 * 10 9 7 33 33 H 1.08999 * 109.47492 * 300.00071 * 10 9 7 34 34 H 1.09007 * 109.46686 * 60.00501 * 11 10 9 35 35 H 1.08998 * 109.47641 * 300.00080 * 11 10 9 36 36 H 0.97006 * 120.00052 * 359.97438 * 14 12 11 37 37 H 1.08996 * 109.47574 * 59.99736 * 15 14 12 38 38 H 1.08999 * 109.47267 * 299.99820 * 15 14 12 39 39 H 1.08000 * 120.01892 * 359.95948 * 20 19 18 40 40 H 1.08004 * 119.98561 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.98557 * 180.25290 * 24 22 21 42 42 H 1.07991 * 120.01870 * 179.72654 * 25 24 22 43 43 H 0.96701 * 116.99962 * 180.02562 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4595 -6.1325 0.0005 13 8 3.6518 -5.9109 0.0001 14 7 2.0102 -7.4032 0.0004 15 6 2.9622 -8.5167 0.0004 16 6 2.1972 -9.8418 0.0009 17 1 1.5702 -9.8996 -0.8888 18 8 1.3761 -9.9172 1.1680 19 6 0.2805 -10.7192 1.1011 20 6 0.0636 -11.5059 -0.0206 21 6 -1.0499 -12.3209 -0.0871 22 6 -1.9521 -12.3486 0.9628 23 9 -3.0436 -13.1418 0.8941 24 6 -1.7341 -11.5678 2.0852 25 6 -0.6214 -10.7519 2.1545 26 6 3.1765 -10.9872 0.0002 27 8 3.1721 -11.7864 0.9063 28 8 4.0536 -11.1196 -1.0072 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6043 0.8905 33 1 2.8719 -3.6044 -0.8894 34 1 0.8533 -5.0450 -0.8887 35 1 0.8538 -5.0446 0.8913 36 1 1.0565 -7.5805 0.0011 37 1 3.5889 -8.4591 0.8903 38 1 3.5889 -8.4589 -0.8896 39 1 0.7648 -11.4812 -0.8416 40 1 -1.2193 -12.9332 -0.9605 41 1 -2.4364 -11.5934 2.9053 42 1 -0.4539 -10.1396 3.0281 43 1 4.6618 -11.8702 -0.9640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -193.938418 kcal Electronic energy + Delta-G solvation = -28101.527783 eV Core-core repulsion = 23640.455141 eV Total energy + Delta-G solvation = -4461.072643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.23392 -41.65125 -40.07659 -39.54010 -37.91934 -36.65113 -35.11631 -34.17253 -32.17767 -31.88488 -31.15664 -29.56101 -27.95966 -25.36655 -23.90820 -23.47509 -23.10816 -21.62150 -20.75857 -19.86144 -19.21981 -18.73429 -18.01744 -17.67618 -17.40685 -16.71774 -16.26245 -16.07677 -15.95616 -15.70957 -15.57639 -15.20120 -14.77792 -14.66288 -14.41565 -14.16055 -14.15225 -13.58633 -13.47293 -13.31638 -13.12575 -12.80996 -12.33926 -12.27375 -12.08124 -12.05020 -11.81894 -11.39660 -11.33033 -11.07831 -10.80854 -10.61924 -10.53780 -9.79050 -9.72327 -9.69095 -9.29349 -9.23195 -9.03043 -8.67067 -8.32043 -5.97698 -3.99054 0.61311 0.68227 1.42278 1.95572 2.43896 2.82734 3.05387 3.17145 3.34900 3.40811 3.45609 3.78663 3.87605 3.97287 4.16068 4.22611 4.48151 4.49958 4.57970 4.72911 4.91100 5.02391 5.15036 5.32616 5.35415 5.38503 5.56731 5.63159 5.64757 5.68355 5.69613 5.83234 6.11054 6.17772 6.25873 6.62004 6.71371 6.91612 7.15272 7.21219 7.42218 7.70813 7.83394 8.02948 8.32326 8.46861 9.08092 9.64955 11.13801 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.002016 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.167706 B =13882.798733 C =15561.680450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.137 4.137 12 C 0.517 3.483 13 O -0.533 6.533 14 N -0.738 5.738 15 C 0.134 3.866 16 C 0.085 3.915 17 H 0.122 0.878 18 O -0.273 6.273 19 C 0.118 3.882 20 C -0.179 4.179 21 C -0.110 4.110 22 C 0.064 3.936 23 F -0.140 7.140 24 C -0.111 4.111 25 C -0.111 4.111 26 C 0.459 3.541 27 O -0.486 6.486 28 O -0.507 6.507 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.403 0.597 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -30.101 -1.040 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.177 4.177 12 C 0.305 3.695 13 O -0.409 6.409 14 N -0.393 5.393 15 C 0.009 3.991 16 C 0.027 3.973 17 H 0.140 0.860 18 O -0.185 6.185 19 C 0.073 3.927 20 C -0.198 4.198 21 C -0.129 4.129 22 C 0.045 3.955 23 F -0.118 7.118 24 C -0.129 4.129 25 C -0.130 4.130 26 C 0.298 3.702 27 O -0.372 6.372 28 O -0.320 6.320 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.238 0.762 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -0.842 -29.617 -0.631 29.636 hybrid contribution 0.167 -0.129 -0.175 0.274 sum -0.675 -29.746 -0.806 29.765 Atomic orbital electron populations 1.69957 1.06037 1.26548 1.51198 1.25020 0.94856 0.99255 0.95400 0.86595 0.79907 0.83435 0.78092 1.20686 1.21272 1.19838 1.21270 0.93191 0.91006 1.50147 0.92570 1.19132 0.93965 0.91446 0.97155 1.21460 0.98670 0.91478 1.01755 1.21857 0.98080 0.93805 1.03975 1.21315 0.90505 0.83304 0.74361 1.90695 1.17308 1.84552 1.48315 1.45987 1.09851 1.05332 1.78128 1.21252 0.91630 0.81132 1.05050 1.22183 0.91242 0.93122 0.90797 0.86018 1.86340 1.34183 1.61636 1.36384 1.19026 0.87139 0.91614 0.94872 1.21009 1.00118 1.00010 0.98650 1.20903 0.93673 0.99714 0.98606 1.17595 0.86254 0.95154 0.96539 1.91508 1.51700 1.71976 1.96656 1.21024 0.98282 0.95967 0.97656 1.20318 0.92934 1.01147 0.98587 1.23631 0.80721 0.86184 0.79656 1.90808 1.68457 1.42355 1.35548 1.84516 1.46535 1.53508 1.47424 0.93064 0.96599 0.96563 0.92647 0.92642 0.89185 0.89123 0.76204 0.89738 0.87779 0.85121 0.84253 0.83651 0.83566 0.72213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.14 -2.13 5.70 -27.88 -0.16 -2.29 16 12 C 0.52 7.62 7.83 -10.98 -0.09 7.53 16 13 O -0.53 -9.99 15.98 5.56 0.09 -9.90 16 14 N -0.74 -7.55 5.45 -60.30 -0.33 -7.87 16 15 C 0.13 1.19 5.30 -4.04 -0.02 1.17 16 16 C 0.09 0.61 2.24 -27.88 -0.06 0.55 16 17 H 0.12 0.57 6.32 -51.93 -0.33 0.24 16 18 O -0.27 -2.42 9.15 -39.50 -0.36 -2.78 16 19 C 0.12 0.99 6.38 -39.23 -0.25 0.74 16 20 C -0.18 -1.30 8.70 -39.44 -0.34 -1.64 16 21 C -0.11 -0.79 10.02 -39.53 -0.40 -1.19 16 22 C 0.06 0.52 7.30 -39.42 -0.29 0.23 16 23 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 24 C -0.11 -0.80 10.02 -39.53 -0.40 -1.20 16 25 C -0.11 -0.86 9.99 -39.44 -0.39 -1.25 16 26 C 0.46 3.56 6.78 36.01 0.24 3.80 16 27 O -0.49 -5.38 17.05 -25.47 -0.43 -5.82 16 28 O -0.51 -2.58 13.33 -39.25 -0.52 -3.11 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.40 3.15 8.35 -40.82 -0.34 2.81 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.89 8.11 -51.93 -0.42 0.46 16 39 H 0.13 0.71 5.68 -52.49 -0.30 0.41 16 40 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.42 0.48 9.10 45.56 0.41 0.89 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -36.84 381.29 -7.62 -44.46 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.74 Total: -1.25 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.82 Total: -8.94 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.41 Total: -34.06 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.23 Total: -21.60 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.84 -7.62 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.478 kcal (2) G-P(sol) polarization free energy of solvation -36.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds