Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 N 1.28462 * 125.06325 * 269.68942 * 16 15 13 18 18 C 1.32007 * 110.50281 * 179.86051 * 17 16 15 19 19 C 1.47639 * 126.26997 * 180.16832 * 18 17 16 20 20 O 1.21480 * 119.99821 * 180.27728 * 19 18 17 21 21 O 1.34717 * 119.99675 * 0.27164 * 19 18 17 22 22 C 1.45203 * 116.99960 * 179.97438 * 21 19 18 23 23 C 1.40925 * 107.46300 * 0.39877 * 18 17 16 24 24 C 1.36806 * 125.06717 * 89.99885 * 16 15 13 25 25 C 1.47057 * 126.64933 * 0.02562 * 24 16 15 26 26 O 1.21551 * 120.00094 * 180.02562 * 25 24 16 27 27 O 1.34808 * 120.00226 * 359.97438 * 25 24 16 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 30 30 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 33 33 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 34 34 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 35 35 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 37 37 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 38 38 H 1.09003 * 109.46746 * 180.02562 * 22 21 19 39 39 H 1.08993 * 109.47171 * 300.00342 * 22 21 19 40 40 H 1.09001 * 109.46474 * 60.00581 * 22 21 19 41 41 H 1.08004 * 127.26694 * 179.76528 * 23 18 17 42 42 H 0.96694 * 117.00600 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 7 3.4722 2.2968 4.1453 18 6 3.4417 3.1922 5.1148 19 6 4.5725 3.5809 5.9807 20 8 4.4150 4.4190 6.8458 21 8 5.7791 3.0061 5.8113 22 6 6.8450 3.4372 6.6981 23 6 2.1305 3.7052 5.1755 24 6 1.4372 3.0539 4.1884 25 6 0.0191 3.2368 3.8447 26 8 -0.6583 4.0343 4.4634 27 8 -0.5295 2.5209 2.8428 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 3.6759 3.5175 -4.4431 36 1 0.9499 1.0100 2.5343 37 1 2.6281 0.4167 2.5258 38 1 7.7604 2.8978 6.4549 39 1 7.0104 4.5074 6.5739 40 1 6.5643 3.2303 7.7308 41 1 1.7519 4.4535 5.8561 42 1 -1.4651 2.6753 2.6539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610000491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = -117.983802 kcal Electronic energy + Delta-G solvation = -29989.078416 eV Core-core repulsion = 25551.219375 eV Total energy + Delta-G solvation = -4437.859042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.02068 -40.32979 -40.02348 -39.24878 -36.57245 -36.42183 -35.57827 -33.77094 -32.81615 -31.55336 -30.29331 -29.30218 -27.88917 -26.70415 -24.83506 -24.00220 -23.18863 -22.61349 -21.22236 -20.64465 -19.18096 -18.62238 -17.84546 -17.48022 -17.17941 -16.60239 -16.48277 -16.44637 -15.95843 -15.55894 -15.37600 -15.05470 -14.84469 -14.25680 -13.93487 -13.84011 -13.64336 -13.58578 -13.39006 -13.13640 -12.74576 -12.28391 -12.18003 -12.07097 -11.90260 -11.74780 -11.48813 -11.31603 -11.01207 -10.92848 -10.92637 -10.91218 -10.85718 -10.65608 -10.22719 -9.88996 -9.72000 -9.60249 -9.02800 -8.51434 -7.89634 -6.12723 -4.17815 0.75782 1.18411 1.85669 2.34778 2.60593 2.76485 2.98077 3.03051 3.25573 3.34088 3.37626 3.65097 3.99677 4.37972 4.41225 4.64162 4.74360 4.91310 4.96378 4.99555 5.05146 5.15708 5.17676 5.22650 5.31477 5.40542 5.44428 5.59706 5.85007 5.91987 6.07764 6.10268 6.12960 6.18976 6.33703 6.86209 7.27731 7.32250 7.36020 7.54313 7.70265 7.82755 8.11161 8.13719 8.66904 8.88095 9.47839 10.95515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.003904 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.224065 B = 7169.858624 C = 9281.774817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.523 6.523 15 C 0.087 3.913 16 N -0.222 5.222 17 N -0.179 5.179 18 C -0.021 4.021 19 C 0.564 3.436 20 O -0.499 6.499 21 O -0.341 6.341 22 C 0.036 3.964 23 C -0.080 4.080 24 C -0.022 4.022 25 C 0.568 3.432 26 O -0.494 6.494 27 O -0.510 6.510 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.182 0.818 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 -7.453 16.242 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.319 5.319 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.282 3.718 14 O -0.398 6.398 15 C -0.036 4.036 16 N -0.016 5.016 17 N -0.021 5.021 18 C -0.175 4.175 19 C 0.406 3.594 20 O -0.385 6.385 21 O -0.256 6.256 22 C -0.057 4.057 23 C -0.108 4.108 24 C -0.144 4.144 25 C 0.410 3.590 26 O -0.380 6.380 27 O -0.323 6.323 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.199 0.801 42 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.084 -7.100 15.961 17.940 hybrid contribution -0.010 0.523 -0.239 0.575 sum -4.094 -6.577 15.722 17.527 Atomic orbital electron populations 1.22250 0.96300 1.01744 1.02722 1.21543 0.93926 0.83809 1.03124 1.48219 1.63127 1.13347 1.07162 1.19344 0.96585 0.93621 0.77467 1.21444 0.96785 1.32198 1.06420 0.92282 1.24928 0.97938 0.94769 0.96344 1.69932 1.35686 1.33248 1.14351 0.86436 0.84488 0.78156 0.78331 1.19712 1.20902 1.20842 1.19943 0.79856 0.87340 0.84683 1.90777 1.45061 1.17534 1.86475 1.22452 1.05668 0.92231 0.83269 1.45584 1.04835 1.27786 1.23349 1.73740 1.04562 1.17415 1.06393 1.20459 0.93586 1.02990 1.00420 1.19367 0.81517 0.78131 0.80412 1.90865 1.83963 1.31054 1.32582 1.86658 1.19044 1.62326 1.57533 1.23346 0.87763 1.01379 0.93241 1.21750 0.90581 1.00161 0.98280 1.20121 0.90436 1.02407 1.01446 1.19108 0.85406 0.77514 0.77013 1.90967 1.61563 1.34156 1.51341 1.84560 1.33740 1.63005 1.50983 0.92630 0.91778 0.91898 0.89266 0.91799 0.94577 0.93826 0.92676 0.84069 0.84941 0.87754 0.91596 0.91709 0.80106 0.71761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.10 1.32 5.94 -4.04 -0.02 1.30 16 3 N -0.59 -11.04 2.46 -175.06 -0.43 -11.47 16 4 C 0.25 6.08 5.16 -5.20 -0.03 6.05 16 5 C -0.53 -14.42 9.39 -34.44 -0.32 -14.75 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 9 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.50 9.45 7.74 -10.98 -0.09 9.37 16 14 O -0.52 -12.69 16.01 5.55 0.09 -12.60 16 15 C 0.09 1.16 4.79 -5.20 -0.02 1.14 16 16 N -0.22 -3.36 2.84 -58.64 -0.17 -3.52 16 17 N -0.18 -2.92 11.97 33.32 0.40 -2.53 16 18 C -0.02 -0.33 7.13 -82.94 -0.59 -0.92 16 19 C 0.56 8.39 7.97 34.57 0.28 8.66 16 20 O -0.50 -7.83 16.70 -19.25 -0.32 -8.15 16 21 O -0.34 -4.63 10.57 -40.54 -0.43 -5.06 16 22 C 0.04 0.33 10.57 101.05 1.07 1.40 16 23 C -0.08 -1.15 10.55 -38.98 -0.41 -1.56 16 24 C -0.02 -0.32 6.90 -82.49 -0.57 -0.89 16 25 C 0.57 7.34 8.31 34.31 0.28 7.63 16 26 O -0.49 -7.24 17.69 -19.30 -0.34 -7.59 16 27 O -0.51 -4.87 10.84 -40.79 -0.44 -5.31 16 28 H 0.05 0.51 7.24 -51.93 -0.38 0.13 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.14 1.42 5.18 -51.93 -0.27 1.15 16 37 H 0.13 1.44 7.40 -51.93 -0.38 1.05 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.18 2.25 8.06 -52.48 -0.42 1.82 16 42 H 0.42 1.99 9.11 45.56 0.42 2.40 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -37.48 377.16 -4.64 -42.12 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.25 Total: -0.55 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -0.14 Total: 17.65 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.54 Total: -42.65 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.44 Total: -38.71 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.48 -4.64 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610000491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.866 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds