Wall clock time and date at job start Sat Apr 11 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 N 1.28462 * 125.06325 * 269.68942 * 16 15 13 18 18 C 1.32007 * 110.50281 * 179.86051 * 17 16 15 19 19 C 1.47639 * 126.26997 * 180.16832 * 18 17 16 20 20 O 1.21480 * 119.99821 * 180.27728 * 19 18 17 21 21 O 1.34717 * 119.99675 * 0.27164 * 19 18 17 22 22 C 1.45203 * 116.99960 * 179.97438 * 21 19 18 23 23 C 1.40925 * 107.46300 * 0.39877 * 18 17 16 24 24 C 1.36806 * 125.06717 * 89.99885 * 16 15 13 25 25 C 1.47057 * 126.64933 * 0.02562 * 24 16 15 26 26 O 1.21551 * 120.00094 * 180.02562 * 25 24 16 27 27 O 1.34808 * 120.00226 * 359.97438 * 25 24 16 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 30 30 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 33 33 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 34 34 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 35 35 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 37 37 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 38 38 H 1.09003 * 109.46746 * 180.02562 * 22 21 19 39 39 H 1.08993 * 109.47171 * 300.00342 * 22 21 19 40 40 H 1.09001 * 109.46474 * 60.00581 * 22 21 19 41 41 H 1.08004 * 127.26694 * 179.76528 * 23 18 17 42 42 H 0.96694 * 117.00600 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 7 3.4722 2.2968 4.1453 18 6 3.4417 3.1922 5.1148 19 6 4.5725 3.5809 5.9807 20 8 4.4150 4.4190 6.8458 21 8 5.7791 3.0061 5.8113 22 6 6.8450 3.4372 6.6981 23 6 2.1305 3.7052 5.1755 24 6 1.4372 3.0539 4.1884 25 6 0.0191 3.2368 3.8447 26 8 -0.6583 4.0343 4.4634 27 8 -0.5295 2.5209 2.8428 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 3.6759 3.5175 -4.4431 36 1 0.9499 1.0100 2.5343 37 1 2.6281 0.4167 2.5258 38 1 7.7604 2.8978 6.4549 39 1 7.0104 4.5074 6.5739 40 1 6.5643 3.2303 7.7308 41 1 1.7519 4.4535 5.8561 42 1 -1.4651 2.6753 2.6539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610000491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:03 Heat of formation + Delta-G solvation = -145.533988 kcal Electronic energy + Delta-G solvation = -29990.273082 eV Core-core repulsion = 25551.219375 eV Total energy + Delta-G solvation = -4439.053707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.14087 -41.39819 -41.02095 -40.72461 -37.63691 -37.35513 -37.08345 -35.14994 -34.63335 -32.65990 -31.63723 -30.52178 -29.05550 -28.16118 -25.86245 -25.43080 -24.51835 -23.96803 -22.34567 -21.69917 -20.47216 -19.72450 -18.84062 -18.77185 -18.52784 -18.32897 -17.70826 -17.56560 -17.06286 -16.92799 -16.53073 -16.46438 -16.18909 -15.76072 -15.12631 -14.89423 -14.75969 -14.58770 -14.48355 -14.41074 -14.21454 -13.63014 -13.40088 -13.23486 -13.08018 -13.01325 -12.79777 -12.69275 -12.59043 -12.49059 -12.16226 -12.02421 -12.01129 -11.86420 -11.84678 -11.69820 -11.21987 -10.74361 -10.65668 -10.38991 -9.52408 -8.24207 -6.37859 -0.33918 0.04997 0.77584 1.35427 1.37303 1.38505 1.49047 1.55790 1.60831 1.81194 1.86471 2.23835 2.40486 2.91559 3.06684 3.36686 3.42482 3.75265 3.91047 3.96972 4.11463 4.21423 4.27644 4.34856 4.35309 4.47073 4.69357 4.70002 4.84764 4.91397 5.04775 5.10410 5.11491 5.13164 5.22725 5.31082 5.49254 5.55585 5.80241 6.04270 6.23135 6.57596 6.60883 6.72922 6.73935 7.19996 7.35992 8.83049 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.003904 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.224065 B = 7169.858624 C = 9281.774817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 N -0.588 5.588 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.492 3.508 14 O -0.587 6.587 15 C 0.098 3.902 16 N -0.226 5.226 17 N -0.200 5.200 18 C -0.032 4.032 19 C 0.565 3.435 20 O -0.513 6.513 21 O -0.352 6.352 22 C 0.028 3.972 23 C -0.085 4.085 24 C -0.028 4.028 25 C 0.577 3.423 26 O -0.515 6.515 27 O -0.499 6.499 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.030 0.970 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.181 0.819 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.194 0.806 42 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 -9.769 17.218 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.319 5.319 4 C 0.144 3.856 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.212 1.212 13 C 0.278 3.722 14 O -0.468 6.468 15 C -0.024 4.024 16 N -0.020 5.020 17 N -0.042 5.042 18 C -0.185 4.185 19 C 0.407 3.593 20 O -0.400 6.400 21 O -0.267 6.267 22 C -0.065 4.065 23 C -0.113 4.113 24 C -0.150 4.150 25 C 0.419 3.581 26 O -0.403 6.403 27 O -0.315 6.315 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.198 0.802 37 H 0.183 0.817 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.211 0.789 42 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -4.213 -9.494 16.932 19.864 hybrid contribution 0.009 1.227 -0.556 1.347 sum -4.204 -8.267 16.377 18.821 Atomic orbital electron populations 1.22201 0.93810 1.03865 1.02390 1.21968 0.95990 0.80591 1.04706 1.48178 1.62967 1.15306 1.05466 1.18725 0.95294 0.91495 0.80067 1.21757 0.98004 1.31882 1.06425 0.92693 1.25793 1.02037 0.94530 0.96573 1.70042 1.37595 1.34214 1.14850 0.85443 0.79427 0.77884 0.78529 1.19034 1.19327 1.21236 1.20832 0.78287 0.86755 0.86286 1.90747 1.47856 1.20529 1.87626 1.22596 1.08689 0.91698 0.79448 1.45715 1.04622 1.28156 1.23492 1.73680 1.05271 1.18253 1.06986 1.20700 0.94286 1.03065 1.00464 1.19358 0.81914 0.77925 0.80071 1.90845 1.84296 1.31724 1.33182 1.86641 1.19239 1.62308 1.58546 1.23710 0.87502 1.01941 0.93349 1.22003 0.90302 1.00311 0.98653 1.20439 0.91314 1.02055 1.01239 1.18860 0.84722 0.77327 0.77210 1.90964 1.61864 1.35161 1.52299 1.84477 1.35724 1.61943 1.49399 0.90875 0.94245 0.88475 0.90470 0.87493 0.95234 0.98638 0.92475 0.80237 0.81685 0.84921 0.91580 0.90600 0.78855 0.69062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.24 71.98 0.74 -2.17 16 2 C 0.09 2.13 5.94 86.38 0.51 2.64 16 3 N -0.59 -21.87 2.46 -826.15 -2.03 -23.90 16 4 C 0.27 13.42 5.16 85.63 0.44 13.86 16 5 C -0.54 -30.08 9.39 25.60 0.24 -29.84 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.55 5.46 84.66 0.46 1.02 16 8 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 C 0.49 18.34 7.74 87.66 0.68 19.02 16 14 O -0.59 -29.28 16.01 -3.04 -0.05 -29.33 16 15 C 0.10 2.34 4.79 85.64 0.41 2.75 16 16 N -0.23 -6.52 2.84 -339.45 -0.96 -7.48 16 17 N -0.20 -6.39 11.97 -48.50 -0.58 -6.97 16 18 C -0.03 -0.98 7.13 42.26 0.30 -0.68 16 19 C 0.56 16.74 7.97 70.30 0.56 17.30 16 20 O -0.51 -16.04 16.70 19.90 0.33 -15.71 16 21 O -0.35 -9.39 10.57 -56.27 -0.59 -9.98 16 22 C 0.03 0.47 10.57 113.37 1.20 1.67 16 23 C -0.09 -2.41 10.55 22.66 0.24 -2.18 16 24 C -0.03 -0.79 6.90 40.41 0.28 -0.51 16 25 C 0.58 13.96 8.31 70.14 0.58 14.55 16 26 O -0.52 -14.47 17.69 19.67 0.35 -14.12 16 27 O -0.50 -8.15 10.84 -57.20 -0.62 -8.77 16 28 H 0.07 1.03 7.24 -2.39 -0.02 1.01 16 29 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.11 1.65 6.43 -2.39 -0.02 1.64 16 33 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 34 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 35 H 0.27 14.85 8.31 -92.72 -0.77 14.08 16 36 H 0.18 2.82 5.18 -2.38 -0.01 2.81 16 37 H 0.17 2.90 7.40 -2.39 -0.02 2.88 16 38 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.19 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.44 2.80 9.11 -74.06 -0.67 2.12 16 Total: -1.00 -85.91 377.16 5.21 -80.70 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.41 Total: 6.52 kcal Atomic # 6 Polarization: 30.79 SS G_CDS: 6.64 Total: 37.43 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.29 Total: -93.03 kcal Atomic # 8 Polarization: -77.33 SS G_CDS: -0.58 Total: -77.91 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -85.91 5.21 -80.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610000491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.839 kcal (2) G-P(sol) polarization free energy of solvation -85.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds