Wall clock time and date at job start Sat Apr 11 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00309 * 2 1 4 4 H 1.48504 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46870 * 299.99478 * 3 2 1 6 6 H 1.48496 * 109.47470 * 59.99631 * 3 2 1 7 7 C 1.37879 * 119.99284 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00329 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99934 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00171 * 179.97438 * 11 10 9 14 14 N 1.46503 * 109.47237 * 179.97438 * 13 11 10 15 15 C 1.34979 * 124.18178 * 90.00251 * 14 13 11 16 16 O 1.21242 * 127.16777 * 357.88196 * 15 14 13 17 17 C 1.51251 * 105.66226 * 177.85956 * 15 14 13 18 18 H 1.09004 * 111.67104 * 246.64256 * 17 15 14 19 19 C 1.52889 * 110.61845 * 120.86261 * 17 15 14 20 20 N 1.47113 * 108.30030 * 200.59766 * 19 17 15 21 21 C 1.34773 * 120.07394 * 237.61656 * 20 19 17 22 22 N 1.34770 * 120.00337 * 4.83659 * 21 20 19 23 23 O 1.21588 * 119.99414 * 184.83581 * 21 20 19 24 24 C 1.46829 * 119.84507 * 57.35081 * 20 19 17 25 25 C 1.53796 * 109.00940 * 303.95358 * 24 20 19 26 26 N 1.46520 * 107.37164 * 45.63604 * 25 24 20 27 27 C 1.33533 * 129.67247 * 126.83241 * 26 25 24 28 28 O 1.21535 * 123.98985 * 9.86732 * 27 26 25 29 29 H 0.97003 * 119.99452 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46790 * 60.00240 * 9 7 2 31 31 H 1.08997 * 109.47131 * 299.99880 * 9 7 2 32 32 H 0.96997 * 120.00299 * 359.97438 * 10 9 7 33 33 H 1.09002 * 109.46814 * 60.00254 * 13 11 10 34 34 H 1.08997 * 109.47224 * 299.99823 * 13 11 10 35 35 H 1.09002 * 109.64452 * 80.87085 * 19 17 15 36 36 H 1.09000 * 109.59160 * 320.30367 * 19 17 15 37 37 H 0.97002 * 120.00164 * 174.94956 * 22 21 20 38 38 H 0.96999 * 119.99752 * 354.67238 * 22 21 20 39 39 H 1.09003 * 109.54857 * 63.81297 * 24 20 19 40 40 H 1.08996 * 109.54196 * 184.00179 * 24 20 19 41 41 H 1.08998 * 109.87979 * 165.10545 * 25 24 20 42 42 H 1.09006 * 109.88032 * 286.09752 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5611 -5.1049 0.0000 13 6 2.7327 -6.0289 -0.0006 14 7 2.0001 -7.2976 -0.0005 15 6 1.6205 -7.9542 -1.1170 16 8 1.7827 -7.6009 -2.2654 17 6 0.9510 -9.2227 -0.6371 18 1 1.5245 -10.1086 -0.9100 19 6 -0.4926 -9.2916 -1.1359 20 7 -1.2337 -10.2287 -0.2776 21 6 -1.8482 -11.2989 -0.8192 22 7 -1.7038 -11.5661 -2.1322 23 8 -2.5330 -12.0234 -0.1230 24 6 -1.2974 -9.9984 1.1711 25 6 0.1336 -9.9064 1.7272 26 7 0.8964 -9.0349 0.8297 27 6 1.6236 -7.9504 1.1092 28 8 1.9101 -7.5963 2.2360 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 3.1565 -3.4356 0.0002 33 1 3.3594 -5.9716 0.8894 34 1 3.3593 -5.9709 -0.8906 35 1 -0.5076 -9.6457 -2.1667 36 1 -0.9465 -8.3022 -1.0791 37 1 -2.0849 -12.3754 -2.5073 38 1 -1.2221 -10.9471 -2.7029 39 1 -1.8264 -9.0662 1.3694 40 1 -1.8234 -10.8250 1.6489 41 1 0.1148 -9.4802 2.7302 42 1 0.5851 -10.8982 1.7547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001613577981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:11 Heat of formation + Delta-G solvation = -75.382416 kcal Electronic energy + Delta-G solvation = -30024.420677 eV Core-core repulsion = 25620.701721 eV Total energy + Delta-G solvation = -4403.718956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.82976 -40.50528 -38.93960 -38.76761 -37.41867 -35.83632 -34.71473 -34.29464 -33.82203 -32.43648 -32.09917 -29.33002 -28.16366 -26.87249 -24.95985 -24.12628 -22.72139 -22.23018 -21.18188 -20.06568 -19.86340 -18.65165 -17.93601 -17.81151 -17.28483 -17.11037 -16.53243 -16.11169 -15.78347 -15.65864 -15.38290 -15.36786 -14.92690 -14.79706 -14.72485 -14.55021 -14.07735 -13.98289 -13.74226 -13.58861 -12.90369 -12.73366 -12.59209 -12.26029 -12.03548 -11.87856 -11.61659 -11.09767 -10.97565 -10.93731 -10.68138 -10.43008 -10.39685 -10.30614 -10.12226 -9.82415 -9.43443 -9.10652 -8.90164 -8.79793 -8.00496 -6.20554 -4.27766 1.40158 1.63272 2.33593 2.60881 2.72681 2.84199 3.13762 3.21679 3.28785 3.31729 3.51852 3.73226 3.92055 3.96112 4.22997 4.32940 4.45362 4.62207 4.73594 4.78393 4.98683 5.11823 5.16052 5.16135 5.20616 5.21264 5.44112 5.47871 5.56878 5.80856 6.10004 6.29228 6.48176 6.89515 7.11399 7.21899 7.29282 7.32655 7.44903 7.59271 7.89523 7.91463 8.14692 8.47880 8.68844 8.93896 9.38644 10.89696 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002483 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.781719 B =11272.688623 C =11507.787148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.486 3.514 12 O -0.547 6.547 13 C 0.097 3.903 14 N -0.558 5.558 15 C 0.534 3.466 16 O -0.459 6.459 17 C 0.077 3.923 18 H 0.136 0.864 19 C 0.118 3.882 20 N -0.625 5.625 21 C 0.713 3.287 22 N -0.867 5.867 23 O -0.588 6.588 24 C 0.109 3.891 25 C 0.139 3.861 26 N -0.621 5.621 27 C 0.715 3.285 28 O -0.533 6.533 29 H 0.266 0.734 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.393 0.607 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.416 0.584 38 H 0.398 0.602 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -24.196 -3.154 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.353 5.353 11 C 0.269 3.731 12 O -0.426 6.426 13 C -0.028 4.028 14 N -0.302 5.302 15 C 0.320 3.680 16 O -0.328 6.328 17 C -0.032 4.032 18 H 0.153 0.847 19 C -0.007 4.007 20 N -0.364 5.364 21 C 0.413 3.587 22 N -0.437 5.437 23 O -0.466 6.466 24 C -0.015 4.015 25 C 0.017 3.983 26 N -0.361 5.361 27 C 0.417 3.583 28 O -0.405 6.405 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.226 0.774 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.248 0.752 38 H 0.229 0.771 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.113 -24.186 -2.432 24.400 hybrid contribution 1.037 1.203 -0.562 1.684 sum 3.150 -22.983 -2.994 23.390 Atomic orbital electron populations 1.69988 1.06140 1.27273 1.48833 1.24962 0.94931 0.99530 0.94625 0.86337 0.79817 0.82842 0.77769 1.19588 1.20779 1.20775 1.21242 0.93344 0.90302 1.53306 0.91712 1.19152 0.88217 0.81740 0.97853 1.46389 1.11431 1.05710 1.71765 1.20496 0.89607 0.84690 0.78298 1.90673 1.16477 1.84702 1.50751 1.21606 0.94149 0.80226 1.06799 1.45934 1.53812 1.22462 1.08005 1.20482 0.77661 0.84962 0.84935 1.90834 1.53073 1.71133 1.17712 1.22664 0.99012 0.98757 0.82799 0.84683 1.21692 0.88512 0.96010 0.94500 1.47098 1.55269 1.25852 1.08144 1.15810 0.79746 0.80657 0.82513 1.43194 1.63167 1.29048 1.08320 1.90978 1.43649 1.50936 1.60995 1.22083 0.96344 1.04331 0.78747 1.22009 0.89536 0.93332 0.93415 1.47424 1.52263 1.29437 1.06971 1.15451 0.78760 0.79870 0.84201 1.90999 1.59347 1.70084 1.20087 0.92453 0.95415 0.95392 0.77415 0.85810 0.86065 0.87988 0.88779 0.75201 0.77135 0.90113 0.86664 0.87083 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.55 5.43 -5.19 -0.03 6.53 16 10 N -0.70 -14.34 5.55 -61.47 -0.34 -14.68 16 11 C 0.49 9.44 7.90 -10.99 -0.09 9.36 16 12 O -0.55 -12.87 16.43 5.56 0.09 -12.78 16 13 C 0.10 1.33 6.20 -5.19 -0.03 1.30 16 14 N -0.56 -7.58 2.11 -122.28 -0.26 -7.83 16 15 C 0.53 6.38 7.56 -10.62 -0.08 6.30 16 16 O -0.46 -6.41 17.78 5.59 0.10 -6.31 16 17 C 0.08 0.63 4.10 -68.06 -0.28 0.36 16 18 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 19 C 0.12 0.89 6.01 -3.76 -0.02 0.87 16 20 N -0.63 -5.13 2.92 -178.24 -0.52 -5.65 16 21 C 0.71 6.56 8.55 -86.93 -0.74 5.82 16 22 N -0.87 -4.59 8.78 27.63 0.24 -4.35 16 23 O -0.59 -7.72 16.54 5.29 0.09 -7.63 16 24 C 0.11 0.88 6.59 -3.45 -0.02 0.86 16 25 C 0.14 1.07 7.16 -3.62 -0.03 1.04 16 26 N -0.62 -6.31 3.00 -171.84 -0.52 -6.83 16 27 C 0.71 9.95 8.34 -88.59 -0.74 9.21 16 28 O -0.53 -9.09 17.26 5.33 0.09 -9.00 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 33 H 0.12 1.47 7.84 -51.93 -0.41 1.06 16 34 H 0.12 1.33 8.03 -51.93 -0.42 0.91 16 35 H 0.10 0.47 5.50 -51.93 -0.29 0.19 16 36 H 0.09 0.93 8.01 -51.93 -0.42 0.52 16 37 H 0.42 1.71 8.93 -40.82 -0.36 1.35 16 38 H 0.40 1.25 6.23 -40.82 -0.25 0.99 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 0.93 6.95 -51.93 -0.36 0.56 16 41 H 0.11 0.87 8.00 -51.93 -0.42 0.45 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -39.15 361.50 -7.24 -46.40 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.91 Total: 4.32 kcal Atomic # 6 Polarization: 30.92 SS G_CDS: -2.48 Total: 28.44 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.66 Total: -64.53 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: 0.37 Total: -35.73 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.15 -7.24 -46.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613577981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.987 kcal (2) G-P(sol) polarization free energy of solvation -39.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds