Wall clock time and date at job start Sat Apr 11 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00309 * 2 1 4 4 H 1.48504 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46870 * 299.99478 * 3 2 1 6 6 H 1.48496 * 109.47470 * 59.99631 * 3 2 1 7 7 C 1.37879 * 119.99284 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00329 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99934 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00171 * 179.97438 * 11 10 9 14 14 N 1.46503 * 109.47237 * 179.97438 * 13 11 10 15 15 C 1.34979 * 124.18178 * 90.00251 * 14 13 11 16 16 O 1.21242 * 127.16777 * 357.88196 * 15 14 13 17 17 C 1.51251 * 105.66226 * 177.85956 * 15 14 13 18 18 H 1.09004 * 111.67104 * 246.64256 * 17 15 14 19 19 C 1.52889 * 110.61845 * 120.86261 * 17 15 14 20 20 N 1.47113 * 108.30030 * 200.59766 * 19 17 15 21 21 C 1.34773 * 120.07394 * 237.61656 * 20 19 17 22 22 N 1.34770 * 120.00337 * 4.83659 * 21 20 19 23 23 O 1.21588 * 119.99414 * 184.83581 * 21 20 19 24 24 C 1.46829 * 119.84507 * 57.35081 * 20 19 17 25 25 C 1.53796 * 109.00940 * 303.95358 * 24 20 19 26 26 N 1.46520 * 107.37164 * 45.63604 * 25 24 20 27 27 C 1.33533 * 129.67247 * 126.83241 * 26 25 24 28 28 O 1.21535 * 123.98985 * 9.86732 * 27 26 25 29 29 H 0.97003 * 119.99452 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46790 * 60.00240 * 9 7 2 31 31 H 1.08997 * 109.47131 * 299.99880 * 9 7 2 32 32 H 0.96997 * 120.00299 * 359.97438 * 10 9 7 33 33 H 1.09002 * 109.46814 * 60.00254 * 13 11 10 34 34 H 1.08997 * 109.47224 * 299.99823 * 13 11 10 35 35 H 1.09002 * 109.64452 * 80.87085 * 19 17 15 36 36 H 1.09000 * 109.59160 * 320.30367 * 19 17 15 37 37 H 0.97002 * 120.00164 * 174.94956 * 22 21 20 38 38 H 0.96999 * 119.99752 * 354.67238 * 22 21 20 39 39 H 1.09003 * 109.54857 * 63.81297 * 24 20 19 40 40 H 1.08996 * 109.54196 * 184.00179 * 24 20 19 41 41 H 1.08998 * 109.87979 * 165.10545 * 25 24 20 42 42 H 1.09006 * 109.88032 * 286.09752 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5611 -5.1049 0.0000 13 6 2.7327 -6.0289 -0.0006 14 7 2.0001 -7.2976 -0.0005 15 6 1.6205 -7.9542 -1.1170 16 8 1.7827 -7.6009 -2.2654 17 6 0.9510 -9.2227 -0.6371 18 1 1.5245 -10.1086 -0.9100 19 6 -0.4926 -9.2916 -1.1359 20 7 -1.2337 -10.2287 -0.2776 21 6 -1.8482 -11.2989 -0.8192 22 7 -1.7038 -11.5661 -2.1322 23 8 -2.5330 -12.0234 -0.1230 24 6 -1.2974 -9.9984 1.1711 25 6 0.1336 -9.9064 1.7272 26 7 0.8964 -9.0349 0.8297 27 6 1.6236 -7.9504 1.1092 28 8 1.9101 -7.5963 2.2360 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 3.1565 -3.4356 0.0002 33 1 3.3594 -5.9716 0.8894 34 1 3.3593 -5.9709 -0.8906 35 1 -0.5076 -9.6457 -2.1667 36 1 -0.9465 -8.3022 -1.0791 37 1 -2.0849 -12.3754 -2.5073 38 1 -1.2221 -10.9471 -2.7029 39 1 -1.8264 -9.0662 1.3694 40 1 -1.8234 -10.8250 1.6489 41 1 0.1148 -9.4802 2.7302 42 1 0.5851 -10.8982 1.7547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613577981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:11 Heat of formation + Delta-G solvation = -108.975984 kcal Electronic energy + Delta-G solvation = -30025.877403 eV Core-core repulsion = 25620.701721 eV Total energy + Delta-G solvation = -4405.175682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.78121 -41.27432 -40.46899 -39.84212 -38.32984 -36.91519 -36.20622 -35.48156 -34.60394 -34.38269 -32.85412 -30.65241 -29.17158 -28.45878 -25.89890 -25.03918 -24.49918 -23.06658 -22.28925 -21.46102 -20.69157 -19.44061 -19.29134 -18.73370 -18.32465 -18.02944 -17.85171 -17.21113 -17.13510 -16.76576 -16.59791 -16.35814 -16.17924 -16.08618 -15.83641 -15.56717 -15.20927 -14.99818 -14.79639 -14.42039 -14.34719 -14.28783 -14.03867 -13.41447 -13.22179 -12.97195 -12.91924 -12.75882 -12.58356 -12.24021 -12.08427 -11.67001 -11.56415 -11.48139 -11.34149 -10.84130 -10.81233 -10.69421 -10.49683 -9.92883 -9.64960 -8.31057 -6.47603 0.44926 0.71231 1.43123 1.44121 1.57054 1.57466 1.59870 1.74887 1.83140 2.03669 2.31611 2.54572 2.79053 3.04394 3.07936 3.21083 3.53849 3.75806 3.81692 3.89871 4.01108 4.11416 4.14878 4.23600 4.28169 4.48625 4.58544 4.74710 4.84432 5.06252 5.15205 5.19535 5.28483 5.42391 5.62127 5.67430 5.81190 5.92392 5.99748 6.16609 6.62393 6.74284 6.75305 6.88827 7.19928 7.36173 7.52447 8.81414 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002483 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.781719 B =11272.688623 C =11507.787148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.269 3.731 10 N -0.699 5.699 11 C 0.481 3.519 12 O -0.594 6.594 13 C 0.108 3.892 14 N -0.567 5.567 15 C 0.531 3.469 16 O -0.480 6.480 17 C 0.088 3.912 18 H 0.181 0.819 19 C 0.120 3.880 20 N -0.622 5.622 21 C 0.711 3.289 22 N -0.847 5.847 23 O -0.630 6.630 24 C 0.111 3.889 25 C 0.141 3.859 26 N -0.615 5.615 27 C 0.708 3.292 28 O -0.573 6.573 29 H 0.268 0.732 30 H -0.011 1.011 31 H -0.015 1.015 32 H 0.413 0.587 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.137 0.863 36 H 0.067 0.933 37 H 0.424 0.576 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -25.388 -4.201 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.146 3.854 10 N -0.349 5.349 11 C 0.267 3.733 12 O -0.476 6.476 13 C -0.017 4.017 14 N -0.311 5.311 15 C 0.319 3.681 16 O -0.350 6.350 17 C -0.019 4.019 18 H 0.198 0.802 19 C -0.005 4.005 20 N -0.360 5.360 21 C 0.411 3.589 22 N -0.418 5.418 23 O -0.510 6.510 24 C -0.013 4.013 25 C 0.020 3.980 26 N -0.353 5.353 27 C 0.410 3.590 28 O -0.448 6.448 29 H 0.077 0.923 30 H 0.007 0.993 31 H 0.003 0.997 32 H 0.249 0.751 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.257 0.743 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.497 -25.432 -3.535 26.067 hybrid contribution 0.225 1.513 -0.270 1.554 sum 4.722 -23.918 -3.804 24.675 Atomic orbital electron populations 1.70150 1.08327 1.28516 1.50051 1.26084 0.95779 1.03991 0.93854 0.85094 0.79180 0.77234 0.77607 1.17431 1.20461 1.20622 1.21649 0.94451 0.90362 1.52738 0.89471 1.18550 0.88620 0.84209 0.94049 1.46086 1.11589 1.05116 1.72149 1.21559 0.90072 0.85486 0.76232 1.90647 1.19076 1.85454 1.52412 1.21615 0.92536 0.77976 1.09565 1.46091 1.54095 1.22266 1.08671 1.21014 0.77122 0.85708 0.84269 1.90826 1.53905 1.71894 1.18336 1.22906 0.99476 0.98336 0.81204 0.80196 1.21716 0.87645 0.94880 0.96219 1.47051 1.55091 1.25702 1.08122 1.15951 0.79375 0.80314 0.83303 1.43021 1.62393 1.29426 1.07000 1.90956 1.45458 1.52343 1.62290 1.22023 0.96532 1.03669 0.79104 1.22185 0.88986 0.94027 0.92799 1.47591 1.51000 1.28406 1.08283 1.15663 0.79061 0.80574 0.83694 1.90964 1.61090 1.71326 1.21461 0.92270 0.99344 0.99659 0.75074 0.83516 0.82593 0.84535 0.91441 0.74255 0.75618 0.91625 0.86406 0.87457 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.09 29.54 68.60 2.03 44.12 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -29.82 9.28 25.60 0.24 -29.58 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.66 5.43 85.63 0.46 15.13 16 10 N -0.70 -28.83 5.55 -466.80 -2.59 -31.42 16 11 C 0.48 18.93 7.90 87.66 0.69 19.62 16 12 O -0.59 -29.15 16.43 -3.03 -0.05 -29.20 16 13 C 0.11 2.81 6.20 85.63 0.53 3.34 16 14 N -0.57 -14.77 2.11 -777.72 -1.64 -16.40 16 15 C 0.53 11.79 7.56 87.80 0.66 12.45 16 16 O -0.48 -12.59 17.78 -2.91 -0.05 -12.64 16 17 C 0.09 1.24 4.10 44.10 0.18 1.42 16 18 H 0.18 1.04 8.14 -2.38 -0.02 1.02 16 19 C 0.12 1.59 6.01 86.23 0.52 2.11 16 20 N -0.62 -9.21 2.92 -836.09 -2.44 -11.66 16 21 C 0.71 11.79 8.55 179.06 1.53 13.32 16 22 N -0.85 -6.73 8.78 -184.76 -1.62 -8.35 16 23 O -0.63 -15.93 16.54 -3.99 -0.07 -16.00 16 24 C 0.11 1.73 6.59 86.58 0.57 2.30 16 25 C 0.14 1.97 7.16 86.64 0.62 2.59 16 26 N -0.61 -11.56 3.00 -816.55 -2.45 -14.01 16 27 C 0.71 19.18 8.34 179.64 1.50 20.68 16 28 O -0.57 -19.56 17.26 -3.83 -0.07 -19.63 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16 32 H 0.41 13.52 8.32 -92.71 -0.77 12.74 16 33 H 0.15 3.20 7.84 -2.39 -0.02 3.18 16 34 H 0.16 2.99 8.03 -2.39 -0.02 2.97 16 35 H 0.14 0.82 5.50 -2.39 -0.01 0.81 16 36 H 0.07 1.32 8.01 -2.39 -0.02 1.30 16 37 H 0.42 2.43 8.93 -92.71 -0.83 1.60 16 38 H 0.41 1.18 6.23 -92.71 -0.58 0.60 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.84 6.95 -2.39 -0.02 1.82 16 41 H 0.11 1.63 8.00 -2.39 -0.02 1.61 16 42 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -89.96 361.50 -1.75 -91.71 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -1.05 Total: 15.44 kcal Atomic # 6 Polarization: 56.01 SS G_CDS: 7.97 Total: 63.98 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -10.46 Total: -137.78 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -0.23 Total: -77.46 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -89.96 -1.75 -91.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613577981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.267 kcal (2) G-P(sol) polarization free energy of solvation -89.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds