Wall clock time and date at job start Sat Apr 11 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35825 * 116.99948 * 2 1 4 4 C 1.39361 * 119.85513 * 90.00006 * 3 2 1 5 5 F 1.35093 * 119.86882 * 0.02562 * 4 3 2 6 6 C 1.37666 * 120.26184 * 180.02562 * 4 3 2 7 7 C 1.39972 * 119.98308 * 0.02562 * 6 4 3 8 8 C 1.47195 * 120.14123 * 180.02562 * 7 6 4 9 9 O 1.21635 * 120.00134 * 234.40339 * 8 7 6 10 10 N 1.34774 * 119.99707 * 54.40450 * 8 7 6 11 11 C 1.46502 * 119.99850 * 185.91839 * 10 8 7 12 12 C 1.50698 * 109.46978 * 90.00198 * 11 10 8 13 13 H 1.08001 * 120.00488 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00244 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99695 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00509 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46761 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46864 * 119.99457 * 16 14 12 19 19 H 1.48491 * 109.47151 * 239.99678 * 16 14 12 20 20 C 1.46505 * 120.00216 * 5.92150 * 10 8 7 21 21 C 1.52999 * 109.47103 * 84.50392 * 20 10 8 22 22 C 1.47201 * 109.47108 * 179.97438 * 21 20 10 23 23 N 6.65906 * 163.58501 * 48.44369 * 2 1 3 24 24 C 1.40396 * 119.72070 * 0.02562 * 7 6 4 25 25 N 1.39168 * 120.13213 * 179.97438 * 24 7 6 26 26 C 1.38652 * 119.85776 * 270.02447 * 3 2 1 27 27 F 1.35095 * 119.99648 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47096 * 299.99828 * 1 2 3 30 30 H 1.09003 * 109.47394 * 60.00232 * 1 2 3 31 31 H 1.07993 * 120.00385 * 179.72423 * 6 4 3 32 32 H 1.09000 * 109.47312 * 210.00106 * 11 10 8 33 33 H 1.08993 * 109.47136 * 330.00099 * 11 10 8 34 34 H 0.96998 * 119.99744 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.47184 * 204.50165 * 20 10 8 36 36 H 1.08998 * 109.47090 * 324.50045 * 20 10 8 37 37 H 1.09000 * 109.46915 * 299.99937 * 21 20 10 38 38 H 1.08998 * 109.47431 * 59.99862 * 21 20 10 39 39 H 0.97002 * 119.99827 * 175.01210 * 25 24 7 40 40 H 0.96993 * 119.99766 * 355.01801 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 2.3606 1.8284 1.2087 5 9 2.0518 1.2213 2.3753 6 6 2.9851 3.0552 1.2184 7 6 3.3056 3.6866 0.0110 8 6 3.9738 4.9981 0.0174 9 8 3.4874 5.9315 -0.5923 10 7 5.1246 5.1647 0.6989 11 6 5.7215 6.4977 0.8136 12 6 5.1873 7.1829 2.0449 13 1 4.4748 6.6761 2.6789 14 6 5.6082 8.4569 2.3623 15 7 6.4763 9.0740 1.5906 16 14 4.9456 9.3067 3.8881 17 1 3.9892 8.4059 4.5804 18 1 6.0704 9.6314 4.8017 19 1 4.2500 10.5583 3.4950 20 6 5.7786 4.0128 1.3248 21 6 6.6524 3.2988 0.2916 22 6 7.3100 2.1418 0.9206 23 7 7.8166 1.2483 1.4082 24 6 2.9870 3.0637 -1.2062 25 7 3.3012 3.6840 -2.4117 26 6 2.3585 1.8255 -1.2025 27 9 2.0506 1.2210 -2.3707 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.2232 3.5325 2.1574 32 1 6.8049 6.4053 0.8904 33 1 5.4686 7.0861 -0.0683 34 1 6.7726 9.9702 1.8140 35 1 6.4001 4.3536 2.1529 36 1 5.0213 3.3238 1.6986 37 1 6.0308 2.9581 -0.5365 38 1 7.4097 3.9878 -0.0822 39 1 3.1466 3.2212 -3.2500 40 1 3.6749 4.5791 -2.4135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630843022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:24 Heat of formation + Delta-G solvation = -100.074450 kcal Electronic energy + Delta-G solvation = -29859.015348 eV Core-core repulsion = 25310.845398 eV Total energy + Delta-G solvation = -4548.169950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.08164 -48.89338 -40.43923 -39.14106 -37.52496 -36.84157 -35.46785 -34.28877 -32.97544 -30.94107 -30.75692 -28.67645 -27.74665 -26.89249 -24.48923 -23.82625 -22.98145 -22.28780 -19.52954 -18.54672 -18.39247 -17.81289 -17.41620 -16.69637 -16.57482 -16.46237 -16.25643 -16.02301 -15.48837 -15.38957 -15.34249 -15.07694 -14.77366 -14.67291 -14.40597 -14.10431 -13.78339 -13.34513 -13.11988 -12.77739 -12.68249 -12.60351 -12.45391 -12.36435 -12.16231 -11.87065 -11.76201 -11.37799 -11.07093 -10.95671 -10.74347 -10.46955 -10.39028 -10.28662 -9.79948 -9.43172 -8.94728 -8.55382 -8.02002 -7.74621 -6.17468 -4.22822 0.44245 0.94789 2.62902 2.75188 2.82863 3.12666 3.23619 3.26918 3.32284 3.35022 3.51851 3.64591 3.76149 4.08887 4.30179 4.34284 4.53127 4.66979 4.96100 4.99434 5.00168 5.09774 5.10727 5.18218 5.30615 5.35692 5.43401 5.52326 5.63358 5.76233 5.82269 6.01255 6.17209 6.78118 6.98132 7.12752 7.18844 7.29666 7.48199 7.58969 7.77992 8.03954 8.06199 8.58883 8.83016 9.43476 10.90589 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.003731 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.770540 B = 7503.160754 C = 7864.986394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.322 6.322 3 C 0.091 3.909 4 C 0.043 3.957 5 F -0.128 7.128 6 C -0.068 4.068 7 C -0.158 4.158 8 C 0.562 3.438 9 O -0.526 6.526 10 N -0.583 5.583 11 C 0.243 3.757 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.107 3.893 21 C -0.048 4.048 22 C 0.215 3.785 23 N -0.440 5.440 24 C 0.240 3.760 25 N -0.850 5.850 26 C 0.018 3.982 27 F -0.127 7.127 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.157 0.843 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.404 0.596 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -14.301 -6.195 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.044 3.956 4 C 0.021 3.979 5 F -0.106 7.106 6 C -0.088 4.088 7 C -0.167 4.167 8 C 0.348 3.652 9 O -0.403 6.403 10 N -0.313 5.313 11 C 0.125 3.875 12 C -0.572 4.572 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.019 4.019 21 C -0.089 4.089 22 C -0.103 4.103 23 N -0.118 5.118 24 C 0.129 3.871 25 N -0.389 5.389 26 C -0.007 4.007 27 F -0.106 7.106 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.175 0.825 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.234 0.766 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.945 -15.131 -5.808 17.633 hybrid contribution -0.728 0.923 0.379 1.235 sum -7.673 -14.209 -5.429 17.036 Atomic orbital electron populations 1.23117 0.77864 1.03842 1.01222 1.86045 1.20663 1.22984 1.94122 1.18397 0.99586 0.87495 0.90083 1.17186 1.06637 0.93316 0.80727 1.91507 1.91460 1.82767 1.44916 1.21075 0.96164 0.92447 0.99117 1.19342 1.08306 0.98256 0.90811 1.17625 0.81353 0.86122 0.80110 1.90815 1.64312 1.41553 1.43604 1.48175 1.22219 1.10183 1.50715 1.19467 0.93435 0.76028 0.98596 1.21435 1.26344 1.00367 1.09005 0.92156 1.24907 0.94890 0.96985 0.97046 1.69925 1.31451 1.13872 1.37761 0.86456 0.78816 0.79627 0.82633 1.19702 1.20916 1.20865 1.21559 0.96682 0.88643 0.94982 1.19827 0.99842 0.90188 0.99056 1.29050 0.93398 0.94167 0.93653 1.81251 1.09908 1.11562 1.09044 1.17360 0.92425 0.89730 0.87573 1.42468 1.70832 1.21189 1.04422 1.16835 1.09453 0.93076 0.81335 1.91461 1.91622 1.82693 1.44782 0.88199 0.92889 0.93062 0.82509 0.94322 0.93189 0.92623 0.88185 0.90123 0.87836 0.86505 0.76650 0.74917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.13 101.05 1.12 1.42 16 2 O -0.32 -4.02 10.11 -19.19 -0.19 -4.21 16 3 C 0.09 1.17 5.73 -39.01 -0.22 0.94 16 4 C 0.04 0.56 7.29 -39.37 -0.29 0.27 16 5 F -0.13 -1.72 17.10 2.25 0.04 -1.68 16 6 C -0.07 -0.87 7.54 -39.14 -0.30 -1.17 16 7 C -0.16 -2.18 4.87 -104.80 -0.51 -2.69 16 8 C 0.56 9.57 6.43 -12.62 -0.08 9.49 16 9 O -0.53 -10.89 15.34 5.25 0.08 -10.81 16 10 N -0.58 -9.88 2.47 -176.42 -0.44 -10.32 16 11 C 0.24 5.35 5.18 -5.19 -0.03 5.33 16 12 C -0.53 -13.43 9.39 -34.44 -0.32 -13.75 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 16 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.11 1.40 5.13 -4.04 -0.02 1.38 16 21 C -0.05 -0.51 5.99 -29.52 -0.18 -0.69 16 22 C 0.22 2.71 15.44 -20.73 -0.32 2.39 16 23 N -0.44 -6.69 18.54 42.19 0.78 -5.91 16 24 C 0.24 2.99 6.76 -83.49 -0.56 2.42 16 25 N -0.85 -9.16 8.96 32.59 0.29 -8.86 16 26 C 0.02 0.22 7.31 -39.20 -0.29 -0.07 16 27 F -0.13 -1.52 16.46 2.25 0.04 -1.48 16 28 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.91 7.35 -52.49 -0.39 1.53 16 32 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.05 1.25 7.35 -51.93 -0.38 0.87 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 36 H 0.08 0.96 4.50 -51.93 -0.23 0.72 16 37 H 0.10 0.98 8.03 -51.93 -0.42 0.57 16 38 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.40 3.42 8.31 -40.82 -0.34 3.08 16 40 H 0.42 4.99 6.81 -40.82 -0.28 4.71 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -31.09 363.90 -4.39 -35.48 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.11 Total: 3.65 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.09 Total: 6.89 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 1.38 Total: -48.75 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.11 Total: -15.02 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.09 -4.39 -35.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630843022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.592 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds