Wall clock time and date at job start Sat Apr 11 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35825 * 116.99948 * 2 1 4 4 C 1.39361 * 119.85513 * 90.00006 * 3 2 1 5 5 F 1.35093 * 119.86882 * 0.02562 * 4 3 2 6 6 C 1.37666 * 120.26184 * 180.02562 * 4 3 2 7 7 C 1.39972 * 119.98308 * 0.02562 * 6 4 3 8 8 C 1.47195 * 120.14123 * 180.02562 * 7 6 4 9 9 O 1.21635 * 120.00134 * 234.40339 * 8 7 6 10 10 N 1.34774 * 119.99707 * 54.40450 * 8 7 6 11 11 C 1.46502 * 119.99850 * 185.91839 * 10 8 7 12 12 C 1.50698 * 109.46978 * 90.00198 * 11 10 8 13 13 H 1.08001 * 120.00488 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00244 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99695 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00509 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46761 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46864 * 119.99457 * 16 14 12 19 19 H 1.48491 * 109.47151 * 239.99678 * 16 14 12 20 20 C 1.46505 * 120.00216 * 5.92150 * 10 8 7 21 21 C 1.52999 * 109.47103 * 84.50392 * 20 10 8 22 22 C 1.47201 * 109.47108 * 179.97438 * 21 20 10 23 23 N 6.65906 * 163.58501 * 48.44369 * 2 1 3 24 24 C 1.40396 * 119.72070 * 0.02562 * 7 6 4 25 25 N 1.39168 * 120.13213 * 179.97438 * 24 7 6 26 26 C 1.38652 * 119.85776 * 270.02447 * 3 2 1 27 27 F 1.35095 * 119.99648 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47096 * 299.99828 * 1 2 3 30 30 H 1.09003 * 109.47394 * 60.00232 * 1 2 3 31 31 H 1.07993 * 120.00385 * 179.72423 * 6 4 3 32 32 H 1.09000 * 109.47312 * 210.00106 * 11 10 8 33 33 H 1.08993 * 109.47136 * 330.00099 * 11 10 8 34 34 H 0.96998 * 119.99744 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.47184 * 204.50165 * 20 10 8 36 36 H 1.08998 * 109.47090 * 324.50045 * 20 10 8 37 37 H 1.09000 * 109.46915 * 299.99937 * 21 20 10 38 38 H 1.08998 * 109.47431 * 59.99862 * 21 20 10 39 39 H 0.97002 * 119.99827 * 175.01210 * 25 24 7 40 40 H 0.96993 * 119.99766 * 355.01801 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 2.3606 1.8284 1.2087 5 9 2.0518 1.2213 2.3753 6 6 2.9851 3.0552 1.2184 7 6 3.3056 3.6866 0.0110 8 6 3.9738 4.9981 0.0174 9 8 3.4874 5.9315 -0.5923 10 7 5.1246 5.1647 0.6989 11 6 5.7215 6.4977 0.8136 12 6 5.1873 7.1829 2.0449 13 1 4.4748 6.6761 2.6789 14 6 5.6082 8.4569 2.3623 15 7 6.4763 9.0740 1.5906 16 14 4.9456 9.3067 3.8881 17 1 3.9892 8.4059 4.5804 18 1 6.0704 9.6314 4.8017 19 1 4.2500 10.5583 3.4950 20 6 5.7786 4.0128 1.3248 21 6 6.6524 3.2988 0.2916 22 6 7.3100 2.1418 0.9206 23 7 7.8166 1.2483 1.4082 24 6 2.9870 3.0637 -1.2062 25 7 3.3012 3.6840 -2.4117 26 6 2.3585 1.8255 -1.2025 27 9 2.0506 1.2210 -2.3707 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.2232 3.5325 2.1574 32 1 6.8049 6.4053 0.8904 33 1 5.4686 7.0861 -0.0683 34 1 6.7726 9.9702 1.8140 35 1 6.4001 4.3536 2.1529 36 1 5.0213 3.3238 1.6986 37 1 6.0308 2.9581 -0.5365 38 1 7.4097 3.9878 -0.0822 39 1 3.1466 3.2212 -3.2500 40 1 3.6749 4.5791 -2.4135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630843022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:23 Heat of formation + Delta-G solvation = -119.594087 kcal Electronic energy + Delta-G solvation = -29859.861783 eV Core-core repulsion = 25310.845398 eV Total energy + Delta-G solvation = -4549.016385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -50.03959 -49.90776 -41.61632 -40.19368 -38.59785 -37.99735 -36.78808 -35.31720 -34.79487 -32.23508 -31.82274 -29.74069 -29.06764 -27.99656 -25.61471 -25.33401 -24.09077 -23.50879 -20.78334 -19.56605 -19.32996 -18.91502 -18.60967 -18.32903 -17.73979 -17.45966 -17.34089 -17.25505 -16.67221 -16.37896 -16.35447 -16.22995 -15.96419 -15.73054 -15.50875 -15.43144 -14.95904 -14.56322 -14.33968 -14.04596 -13.80837 -13.71691 -13.58855 -13.55528 -13.40501 -13.15343 -12.92726 -12.73233 -12.64401 -12.52185 -12.15925 -11.98503 -11.62874 -11.46099 -11.25330 -10.84859 -10.55722 -9.99437 -9.51176 -8.72900 -8.15466 -6.26844 -0.57326 -0.04391 1.42860 1.45033 1.48571 1.55693 1.69309 1.81478 2.05222 2.10844 2.37191 2.47562 2.72269 2.76029 3.05299 3.17651 3.27054 3.46025 3.61595 4.00391 4.04616 4.09094 4.26262 4.35085 4.38091 4.50277 4.55892 4.64311 4.71925 4.77889 4.79785 4.99830 5.12444 5.20725 5.37566 5.59461 5.86194 6.07534 6.14134 6.19776 6.54770 6.59309 6.67288 6.82422 7.23547 7.45098 8.91366 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.003731 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.770540 B = 7503.160754 C = 7864.986394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.338 6.338 3 C 0.099 3.901 4 C 0.037 3.963 5 F -0.132 7.132 6 C -0.058 4.058 7 C -0.169 4.169 8 C 0.567 3.433 9 O -0.568 6.568 10 N -0.581 5.581 11 C 0.258 3.742 12 C -0.540 4.540 13 H 0.058 0.942 14 C 0.015 3.985 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.286 1.286 20 C 0.105 3.895 21 C -0.037 4.037 22 C 0.242 3.758 23 N -0.484 5.484 24 C 0.251 3.749 25 N -0.840 5.840 26 C 0.018 3.982 27 F -0.123 7.123 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.162 0.838 32 H 0.039 0.961 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.416 0.584 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 -15.666 -6.125 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C 0.052 3.948 4 C 0.015 3.985 5 F -0.110 7.110 6 C -0.078 4.078 7 C -0.178 4.178 8 C 0.355 3.645 9 O -0.448 6.448 10 N -0.310 5.310 11 C 0.138 3.862 12 C -0.579 4.579 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.780 3.220 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.212 1.212 20 C -0.020 4.020 21 C -0.078 4.078 22 C -0.075 4.075 23 N -0.162 5.162 24 C 0.138 3.862 25 N -0.379 5.379 26 C -0.007 4.007 27 F -0.102 7.102 28 H 0.142 0.858 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.179 0.821 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.248 0.752 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.799 -16.546 -5.748 19.174 hybrid contribution -0.539 1.283 0.295 1.423 sum -8.338 -15.263 -5.453 18.227 Atomic orbital electron populations 1.23383 0.75862 1.05719 1.01712 1.86012 1.22553 1.22758 1.94177 1.18499 0.98852 0.87354 0.90093 1.17122 1.07289 0.93396 0.80717 1.91498 1.91569 1.82824 1.45131 1.21037 0.95570 0.92284 0.98923 1.18891 1.10057 0.97102 0.91799 1.17962 0.80811 0.86811 0.78955 1.90793 1.65306 1.43323 1.45385 1.47972 1.22447 1.09520 1.51055 1.18954 0.93359 0.78011 0.95902 1.21789 1.25773 1.00621 1.09718 0.92420 1.25643 0.95291 0.97871 0.99598 1.70019 1.32769 1.14219 1.39332 0.85571 0.78374 0.78380 0.79725 1.19099 1.20242 1.21234 1.21708 0.97269 0.87627 0.95377 1.19798 0.99927 0.89526 0.98547 1.29158 0.92281 0.93591 0.92499 1.81286 1.11447 1.13078 1.10350 1.17314 0.91677 0.89625 0.87538 1.42490 1.69872 1.20900 1.04619 1.16710 1.09650 0.92954 0.81395 1.91473 1.91599 1.82601 1.44537 0.85765 0.92558 0.92418 0.82056 0.94322 0.96579 0.92620 0.88545 0.88597 0.85921 0.85187 0.75228 0.75346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.13 113.37 1.26 1.66 16 2 O -0.34 -7.70 10.11 -91.58 -0.93 -8.63 16 3 C 0.10 2.33 5.73 22.64 0.13 2.46 16 4 C 0.04 0.88 7.29 22.40 0.16 1.05 16 5 F -0.13 -3.31 17.10 44.97 0.77 -2.54 16 6 C -0.06 -1.40 7.54 22.55 0.17 -1.23 16 7 C -0.17 -4.43 4.87 -19.98 -0.10 -4.53 16 8 C 0.57 19.03 6.43 86.60 0.56 19.59 16 9 O -0.57 -23.76 15.34 -4.14 -0.06 -23.83 16 10 N -0.58 -19.40 2.47 -830.30 -2.05 -21.45 16 11 C 0.26 11.50 5.18 85.63 0.44 11.94 16 12 C -0.54 -27.32 9.39 25.60 0.24 -27.08 16 13 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 14 C 0.02 0.81 5.46 84.65 0.46 1.27 16 15 N -0.92 -51.12 13.29 21.45 0.28 -50.84 16 16 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.10 2.59 5.13 86.38 0.44 3.03 16 21 C -0.04 -0.71 5.99 28.79 0.17 -0.54 16 22 C 0.24 5.66 15.44 89.43 1.38 7.04 16 23 N -0.48 -14.13 18.54 20.02 0.37 -13.76 16 24 C 0.25 5.80 6.76 38.65 0.26 6.06 16 25 N -0.84 -16.78 8.96 -50.79 -0.45 -17.23 16 26 C 0.02 0.40 7.31 22.52 0.16 0.57 16 27 F -0.12 -2.67 16.46 44.97 0.74 -1.93 16 28 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.16 3.69 7.35 -2.91 -0.02 3.67 16 32 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 33 H 0.02 0.83 7.35 -2.39 -0.02 0.81 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.17 16 35 H 0.10 2.49 8.03 -2.39 -0.02 2.47 16 36 H 0.10 2.10 4.50 -2.39 -0.01 2.09 16 37 H 0.12 1.99 8.03 -2.39 -0.02 1.97 16 38 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.42 6.23 8.31 -92.71 -0.77 5.46 16 40 H 0.41 9.51 6.81 -92.71 -0.63 8.88 16 Total: -1.00 -66.68 363.90 6.19 -60.49 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -0.26 Total: 14.53 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 5.75 Total: 21.30 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -1.85 Total: -103.27 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.99 Total: -32.45 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.51 Total: -4.47 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -66.68 6.19 -60.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630843022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.103 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds