Wall clock time and date at job start Sat Apr 11 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48492 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47175 * 300.00841 * 3 2 1 6 6 H 1.48504 * 109.46704 * 60.00033 * 3 2 1 7 7 C 1.37879 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99720 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46741 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00620 * 278.09416 * 10 9 7 12 12 C 1.50705 * 109.47300 * 270.00364 * 11 10 9 13 13 C 1.34514 * 125.78725 * 89.71102 * 12 11 10 14 14 C 1.41385 * 106.83735 * 179.89138 * 13 12 11 15 15 C 1.34512 * 106.84020 * 0.37357 * 14 13 12 16 16 O 1.34300 * 108.42283 * 359.76974 * 15 14 13 17 17 C 1.34778 * 119.99822 * 98.09806 * 10 9 7 18 18 O 1.21555 * 120.00194 * 186.11919 * 17 10 9 19 19 C 1.47865 * 120.00208 * 6.11780 * 17 10 9 20 20 C 1.39682 * 120.07065 * 330.29534 * 19 17 10 21 21 C 1.38047 * 120.13644 * 179.97438 * 20 19 17 22 22 C 1.38110 * 120.29862 * 359.97438 * 21 20 19 23 23 C 1.39609 * 120.15019 * 0.04801 * 22 21 20 24 24 C 1.43205 * 120.07272 * 179.97438 * 23 22 21 25 25 C 9.02040 * 85.58287 * 134.18094 * 2 1 3 26 26 C 9.78835 * 100.35166 * 128.72325 * 7 1 2 27 27 O 1.42897 * 109.47292 * 346.01580 * 26 25 24 28 28 C 1.39310 * 119.85978 * 359.93190 * 23 22 21 29 29 H 0.96997 * 120.00590 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46813 * 60.01011 * 9 7 2 31 31 H 1.08994 * 109.47653 * 300.00533 * 9 7 2 32 32 H 1.09002 * 109.46526 * 30.00002 * 11 10 9 33 33 H 1.08992 * 109.47275 * 150.00010 * 11 10 9 34 34 H 1.08002 * 126.58399 * 0.02562 * 13 12 11 35 35 H 1.07995 * 126.57685 * 180.16483 * 14 13 12 36 36 H 1.07996 * 125.78982 * 179.75581 * 15 14 13 37 37 H 1.07995 * 119.93044 * 359.97399 * 20 19 17 38 38 H 1.08000 * 119.84897 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.92524 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.46822 * 106.02003 * 26 25 24 41 41 H 1.09001 * 109.47167 * 226.01584 * 26 25 24 42 42 H 0.96697 * 113.99957 * 180.02562 * 27 26 25 43 43 H 1.07994 * 120.15326 * 180.31731 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.8140 -4.0528 -1.2585 12 6 1.9541 -5.1177 -1.8891 13 6 0.9457 -4.9048 -2.7535 14 6 0.4199 -6.1734 -3.0898 15 6 1.1330 -7.0850 -2.4044 16 8 2.0609 -6.4399 -1.6788 17 6 2.5169 -4.2321 1.1533 18 8 3.3876 -5.0801 1.1711 19 6 1.8021 -3.8802 2.3990 20 6 1.2973 -2.5899 2.5756 21 6 0.6293 -2.2601 3.7378 22 6 0.4550 -3.2021 4.7326 23 6 0.9549 -4.4953 4.5691 24 6 0.7737 -5.4706 5.6019 25 6 0.6204 -6.2679 6.4497 26 6 0.4330 -7.2725 7.5091 27 8 -0.8698 -7.1276 8.0780 28 6 1.6297 -4.8352 3.3987 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 2.8986 -3.2046 -1.9379 33 1 3.8057 -4.4580 -1.0580 34 1 0.6048 -3.9485 -3.1219 35 1 -0.3995 -6.3721 -3.7647 36 1 0.9844 -8.1544 -2.4325 37 1 1.4299 -1.8487 1.8014 38 1 0.2405 -1.2611 3.8693 39 1 -0.0689 -2.9376 5.6392 40 1 0.5352 -8.2713 7.0848 41 1 1.1859 -7.1282 8.2840 42 1 -1.0627 -7.7586 8.7848 43 1 2.0139 -5.8356 3.2651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631463940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:31 Heat of formation + Delta-G solvation = 16.648099 kcal Electronic energy + Delta-G solvation = -28153.547958 eV Core-core repulsion = 24132.376257 eV Total energy + Delta-G solvation = -4021.171701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.49062 -41.49116 -39.45922 -37.97969 -37.24498 -35.09253 -34.68513 -33.89438 -32.73133 -31.94733 -31.11806 -29.38335 -27.72773 -27.14651 -25.26983 -23.99012 -23.83948 -22.62968 -21.71008 -20.83333 -19.12716 -18.80630 -18.46520 -18.07935 -17.82055 -17.41863 -17.19697 -16.64954 -16.41315 -16.27196 -15.96543 -15.76760 -15.67205 -15.13371 -14.83816 -14.53116 -14.37089 -14.05751 -13.89961 -13.72946 -13.67497 -13.54714 -13.20218 -13.02707 -12.74782 -12.66765 -12.53402 -12.25009 -12.16379 -11.74547 -11.65746 -11.52429 -10.96312 -10.84072 -10.81647 -10.59902 -10.08742 -9.70932 -9.45814 -9.39558 -8.22985 -6.38894 -0.23998 0.03170 0.70010 1.37529 1.43742 1.49036 1.53647 1.58605 1.65584 1.95535 2.17657 2.31627 2.43641 2.86371 2.96387 3.06896 3.54561 3.81552 3.85841 3.88980 4.07476 4.13868 4.16087 4.26745 4.33491 4.36424 4.45596 4.51743 4.55284 4.56756 4.77873 4.83931 4.90606 5.00861 5.03210 5.17451 5.21616 5.28405 5.41351 5.48369 5.57422 5.62300 5.71285 5.87400 5.97302 6.21538 6.37977 6.42894 6.74429 6.92343 7.11061 7.33169 8.81601 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.003957 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.509311 B = 7075.214621 C = 9947.304906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.037 3.963 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.222 3.778 10 N -0.585 5.585 11 C 0.195 3.805 12 C -0.047 4.047 13 C -0.201 4.201 14 C -0.223 4.223 15 C -0.044 4.044 16 O -0.193 6.193 17 C 0.555 3.445 18 O -0.585 6.585 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.064 4.064 23 C -0.020 4.020 24 C -0.144 4.144 25 C -0.168 4.168 26 C 0.193 3.807 27 O -0.591 6.591 28 C -0.050 4.050 29 H 0.272 0.728 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.240 0.760 37 H 0.187 0.813 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.411 0.589 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -11.163 7.124 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.103 3.897 10 N -0.314 5.314 11 C 0.072 3.928 12 C -0.098 4.098 13 C -0.222 4.222 14 C -0.242 4.242 15 C -0.111 4.111 16 O -0.090 6.090 17 C 0.345 3.655 18 O -0.467 6.467 19 C -0.155 4.155 20 C -0.114 4.114 21 C -0.147 4.147 22 C -0.082 4.082 23 C -0.020 4.020 24 C -0.144 4.144 25 C -0.168 4.168 26 C 0.117 3.883 27 O -0.402 6.402 28 C -0.069 4.069 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.256 0.744 37 H 0.204 0.796 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.263 0.737 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.300 -11.119 6.866 13.133 hybrid contribution 0.207 0.617 -0.204 0.682 sum -1.093 -10.502 6.662 12.485 Atomic orbital electron populations 1.70009 1.06991 1.28563 1.48433 1.25551 0.95470 1.01833 0.93723 0.85583 0.78984 0.79632 0.78027 1.19652 1.20504 1.19971 1.21528 0.93675 0.90829 1.52865 0.92271 1.20118 0.88031 0.82390 0.99197 1.48131 1.44458 1.33410 1.05394 1.19755 0.94357 0.93151 0.85527 1.23029 1.02459 0.82260 1.02073 1.21905 0.98035 1.00383 1.01834 1.22160 1.04633 0.91593 1.05771 1.24889 0.90797 1.00220 0.95215 1.84073 1.49441 1.19010 1.56459 1.18612 0.82222 0.80311 0.84336 1.90652 1.33630 1.35596 1.86872 1.19788 1.04339 0.96141 0.95182 1.23472 0.91750 0.97026 0.99159 1.21343 0.99863 1.00774 0.92677 1.21631 0.96256 0.90755 0.99523 1.15787 1.02631 0.92252 0.91317 1.19350 1.00506 0.97413 0.97131 1.22752 1.00573 0.96871 0.96579 1.19021 0.85922 0.93042 0.90327 1.86490 1.32946 1.63135 1.57647 1.21151 0.95657 0.98808 0.91273 0.91844 0.96224 0.91929 0.85866 0.89529 0.83160 0.80784 0.74432 0.79631 0.83220 0.82890 0.88356 0.87996 0.73661 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.55 13.29 21.45 0.28 -45.27 16 2 C 0.04 1.81 5.33 84.66 0.45 2.26 16 3 Si 0.95 38.98 29.54 68.60 2.03 41.01 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.55 -26.76 7.47 25.60 0.19 -26.57 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.22 10.38 4.64 85.63 0.40 10.78 16 10 N -0.59 -25.86 2.45 -833.90 -2.04 -27.90 16 11 C 0.19 7.66 5.99 85.63 0.51 8.17 16 12 C -0.05 -1.78 6.90 24.83 0.17 -1.60 16 13 C -0.20 -6.82 10.81 22.19 0.24 -6.58 16 14 C -0.22 -6.21 10.91 22.19 0.24 -5.97 16 15 C -0.04 -1.21 12.09 66.97 0.81 -0.40 16 16 O -0.19 -7.11 10.65 -2.44 -0.03 -7.13 16 17 C 0.55 25.57 7.46 86.79 0.65 26.21 16 18 O -0.58 -28.88 16.26 -3.89 -0.06 -28.94 16 19 C -0.15 -6.46 5.58 -20.12 -0.11 -6.57 16 20 C -0.10 -3.99 7.48 22.57 0.17 -3.83 16 21 C -0.13 -4.46 10.02 22.19 0.22 -4.24 16 22 C -0.06 -2.02 9.74 22.57 0.22 -1.80 16 23 C -0.02 -0.69 5.72 -21.44 -0.12 -0.81 16 24 C -0.14 -4.62 13.23 30.02 0.40 -4.23 16 25 C -0.17 -4.54 13.73 31.13 0.43 -4.11 16 26 C 0.19 3.03 7.52 70.18 0.53 3.56 16 27 O -0.59 -9.83 13.62 -148.98 -2.03 -11.86 16 28 C -0.05 -1.94 9.29 22.79 0.21 -1.73 16 29 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 30 H 0.02 0.98 8.13 -2.38 -0.02 0.96 16 31 H 0.06 3.05 4.08 -2.41 -0.01 3.04 16 32 H 0.12 4.48 8.07 -2.39 -0.02 4.46 16 33 H 0.09 3.43 7.35 -2.39 -0.02 3.41 16 34 H 0.15 4.94 8.06 -2.91 -0.02 4.91 16 35 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.24 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.19 8.51 2.99 -2.91 -0.01 8.51 16 38 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.41 1.73 9.12 -74.06 -0.68 1.06 16 43 H 0.12 4.80 7.92 -2.91 -0.02 4.78 16 Total: -1.00 -68.59 381.36 4.15 -64.44 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.40 Total: 33.11 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 5.60 Total: -17.45 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.76 Total: -73.17 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -2.12 Total: -47.94 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -68.59 4.15 -64.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631463940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.087 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds