Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46978 * 272.08813 * 3 2 1 5 5 H 1.48496 * 109.47330 * 32.08824 * 3 2 1 6 6 H 1.48492 * 109.46854 * 152.09024 * 3 2 1 7 7 C 1.39937 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00628 * 339.89798 * 7 2 1 9 9 C 1.41396 * 119.99944 * 159.90314 * 7 2 1 10 10 C 1.40448 * 119.96760 * 330.77606 * 9 7 2 11 11 C 1.37603 * 119.54397 * 180.27791 * 10 9 7 12 12 C 1.38374 * 119.99104 * 0.18145 * 11 10 9 13 13 C 1.39256 * 121.04758 * 359.90933 * 12 11 10 14 14 C 1.37091 * 119.98541 * 359.53059 * 13 12 11 15 15 C 1.50558 * 122.99680 * 181.01566 * 14 13 12 16 16 C 1.52786 * 110.88141 * 339.71831 * 15 14 13 17 17 N 1.47246 * 107.86283 * 47.37266 * 16 15 14 18 18 C 1.34772 * 121.34583 * 115.95907 * 17 16 15 19 19 O 1.21592 * 119.99573 * 4.52254 * 18 17 16 20 20 C 1.47541 * 120.00129 * 184.52405 * 18 17 16 21 21 C 1.39809 * 120.16656 * 309.03701 * 20 18 17 22 22 C 1.37741 * 119.99988 * 180.29712 * 21 20 18 23 23 C 1.38546 * 120.34865 * 359.45354 * 22 21 20 24 24 C 1.38439 * 120.33164 * 0.25511 * 23 22 21 25 25 O 1.35999 * 120.00076 * 180.02562 * 24 23 22 26 26 C 1.39175 * 119.98950 * 0.02562 * 24 23 22 27 27 O 1.35740 * 120.16984 * 180.02562 * 26 24 23 28 28 C 1.46669 * 117.31164 * 296.23678 * 17 16 15 29 29 H 0.96999 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.22348 * 0.26708 * 10 9 7 31 31 H 1.07996 * 120.00188 * 180.16480 * 11 10 9 32 32 H 1.07994 * 119.47900 * 179.88010 * 12 11 10 33 33 H 1.09004 * 109.19802 * 219.36062 * 15 14 13 34 34 H 1.09002 * 109.16112 * 100.05322 * 15 14 13 35 35 H 1.08992 * 109.78361 * 287.78113 * 16 15 14 36 36 H 1.09002 * 109.78803 * 166.95851 * 16 15 14 37 37 H 1.08000 * 119.99545 * 0.04555 * 21 20 18 38 38 H 1.08002 * 119.82698 * 179.72976 * 22 21 20 39 39 H 1.07993 * 119.83573 * 180.27873 * 23 22 21 40 40 H 0.96694 * 113.99715 * 89.99902 * 25 24 23 41 41 H 0.96706 * 113.99590 * 89.99985 * 27 26 24 42 42 H 1.08996 * 109.42947 * 164.22403 * 28 17 16 43 43 H 1.08998 * 109.42689 * 284.06816 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4455 2.0719 -1.3992 5 1 1.4625 2.6395 0.7437 6 1 3.5611 1.4278 0.6553 7 6 2.0079 -1.2119 0.0005 8 1 1.5173 -2.1186 0.3224 9 6 3.3573 -1.2494 -0.4202 10 6 3.8221 -0.3247 -1.3697 11 6 5.1355 -0.3728 -1.7772 12 6 5.9872 -1.3300 -1.2547 13 6 5.5388 -2.2539 -0.3142 14 6 4.2374 -2.2179 0.1152 15 6 3.6870 -3.1686 1.1448 16 6 4.5584 -4.4189 1.2524 17 7 5.9625 -3.9845 1.3426 18 6 6.7009 -4.2238 2.4444 19 8 6.2368 -4.8804 3.3565 20 6 8.0724 -3.6890 2.5437 21 6 8.9866 -3.9028 1.5077 22 6 10.2680 -3.4073 1.6068 23 6 10.6552 -2.6863 2.7247 24 6 9.7597 -2.4611 3.7561 25 8 10.1468 -1.7520 4.8501 26 6 8.4632 -2.9604 3.6732 27 8 7.5820 -2.7413 4.6821 28 6 6.5231 -3.2754 0.1876 29 1 -0.4850 0.8400 -0.0004 30 1 3.1531 0.4188 -1.7772 31 1 5.5014 0.3363 -2.5049 32 1 7.0160 -1.3615 -1.5818 33 1 2.6761 -3.4598 0.8596 34 1 3.6563 -2.6688 2.1130 35 1 4.4210 -5.0415 0.3684 36 1 4.2882 -4.9813 2.1462 37 1 8.6892 -4.4600 0.6317 38 1 10.9732 -3.5778 0.8068 39 1 11.6606 -2.2978 2.7917 40 1 9.9961 -0.7999 4.7752 41 1 7.0640 -1.9307 4.5828 42 1 7.4456 -2.7751 0.4822 43 1 6.7368 -3.9896 -0.6075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634852857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = -65.708742 kcal Electronic energy + Delta-G solvation = -29346.280976 eV Core-core repulsion = 25321.538014 eV Total energy + Delta-G solvation = -4024.742962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85428 -39.53973 -38.24103 -37.01194 -36.68869 -35.60385 -33.78582 -32.45271 -31.04601 -30.45368 -29.51003 -29.03714 -25.73796 -25.05765 -24.03119 -22.96012 -22.52067 -20.68607 -20.59608 -19.29775 -18.28175 -18.04022 -17.32267 -16.64805 -16.52272 -16.31445 -15.85664 -15.44872 -15.13849 -14.83833 -14.55007 -14.45563 -14.01909 -13.75698 -13.45171 -13.30907 -12.96393 -12.86289 -12.60774 -12.45461 -12.24089 -11.98655 -11.82813 -11.68528 -11.53254 -11.44612 -11.04929 -10.83700 -10.66139 -10.61073 -10.21864 -9.93608 -9.70814 -9.51641 -9.21537 -9.05505 -8.81187 -8.40572 -7.64270 -7.60645 -7.05280 -4.57703 0.68079 0.89161 2.44224 2.48796 2.71225 3.01540 3.03689 3.13374 3.22558 3.37918 3.85040 3.88903 3.95068 4.34257 4.43946 4.66541 4.88039 5.01490 5.16718 5.23352 5.34777 5.46217 5.55549 5.61116 5.66883 5.73430 5.81379 5.88023 5.93972 5.99936 6.05631 6.13340 6.27498 6.34443 6.49085 6.52829 6.70863 6.72407 6.86589 7.04404 7.19408 7.33578 7.45297 7.59684 7.59722 7.64368 7.77556 7.98163 8.25671 8.27506 8.54714 8.69777 9.96281 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.003556 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.751286 B = 7871.028674 C = 8039.995959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.446 4.446 8 H 0.095 0.905 9 C 0.095 3.905 10 C -0.244 4.244 11 C -0.075 4.075 12 C -0.241 4.241 13 C -0.068 4.068 14 C -0.159 4.159 15 C -0.071 4.071 16 C 0.113 3.887 17 N -0.599 5.599 18 C 0.562 3.438 19 O -0.526 6.526 20 C -0.133 4.133 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.114 4.114 24 C 0.074 3.926 25 O -0.486 6.486 26 C 0.132 3.868 27 O -0.474 6.474 28 C 0.149 3.851 29 H 0.286 0.714 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.388 0.612 41 H 0.391 0.609 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.508 -1.468 1.060 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.172 1.172 7 C -0.474 4.474 8 H 0.113 0.887 9 C 0.092 3.908 10 C -0.263 4.263 11 C -0.093 4.093 12 C -0.260 4.260 13 C -0.069 4.069 14 C -0.160 4.160 15 C -0.109 4.109 16 C -0.009 4.009 17 N -0.331 5.331 18 C 0.350 3.650 19 O -0.402 6.402 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.135 4.135 23 C -0.133 4.133 24 C 0.029 3.971 25 O -0.295 6.295 26 C 0.085 3.915 27 O -0.284 6.284 28 C 0.026 3.974 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.244 0.756 41 H 0.248 0.752 42 H 0.106 0.894 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.321 -2.825 2.040 16.689 hybrid contribution -0.145 1.926 -0.566 2.013 sum 16.175 -0.899 1.474 16.267 Atomic orbital electron populations 1.69705 1.08134 1.30404 1.34365 1.26153 0.94641 1.01757 0.90819 0.86319 0.80872 0.79820 0.79005 1.19522 1.21880 1.17206 1.19538 0.93789 0.96311 1.37763 0.88699 1.17696 0.92635 0.90646 0.89815 1.21019 0.96135 1.05194 1.03973 1.20491 0.93882 0.96962 0.98004 1.20151 0.98563 1.01544 1.05788 1.19122 0.93584 0.96206 0.97994 1.19239 0.92352 1.02543 1.01905 1.20467 0.98721 0.93429 0.98239 1.21769 0.79189 0.97374 1.02569 1.48010 1.13133 1.56274 1.15678 1.17947 0.84687 0.80487 0.81905 1.90804 1.72135 1.39249 1.38027 1.20278 0.95603 1.02890 0.94882 1.21307 0.93030 0.98590 0.97251 1.20975 0.96012 0.98448 0.98099 1.21477 0.99946 0.99463 0.92400 1.18646 0.91707 0.98514 0.88260 1.84929 1.84931 1.23094 1.36592 1.18736 0.88864 0.97171 0.86751 1.84880 1.53630 1.47266 1.42603 1.20638 0.96295 0.93399 0.87044 0.90353 0.88050 0.88810 0.88877 0.89878 0.91861 0.91140 0.89214 0.84533 0.84571 0.84619 0.75638 0.75198 0.89406 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.53 13.93 55.55 0.77 -19.76 16 2 C 0.09 2.15 5.37 -17.34 -0.09 2.06 16 3 Si 0.91 20.08 24.61 -169.99 -4.18 15.90 16 4 H -0.27 -5.76 6.52 56.52 0.37 -5.39 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.25 -5.62 7.07 56.52 0.40 -5.22 16 7 C -0.45 -11.29 8.80 -37.75 -0.33 -11.62 16 8 H 0.10 2.49 6.47 -52.49 -0.34 2.15 16 9 C 0.10 2.25 5.12 -106.67 -0.55 1.70 16 10 C -0.24 -5.56 7.32 -38.98 -0.29 -5.85 16 11 C -0.08 -1.51 10.03 -39.76 -0.40 -1.91 16 12 C -0.24 -4.47 9.62 -39.15 -0.38 -4.84 16 13 C -0.07 -1.28 5.81 -104.77 -0.61 -1.89 16 14 C -0.16 -3.37 5.82 -103.91 -0.60 -3.97 16 15 C -0.07 -1.36 5.29 -28.06 -0.15 -1.51 16 16 C 0.11 1.87 6.45 -3.74 -0.02 1.84 16 17 N -0.60 -9.64 2.94 -175.82 -0.52 -10.16 16 18 C 0.56 9.49 6.94 -12.47 -0.09 9.41 16 19 O -0.53 -10.68 16.12 -1.65 -0.03 -10.70 16 20 C -0.13 -1.88 4.95 -104.86 -0.52 -2.39 16 21 C -0.08 -0.91 7.50 -39.18 -0.29 -1.20 16 22 C -0.12 -1.03 10.02 -39.65 -0.40 -1.43 16 23 C -0.11 -1.06 9.97 -39.39 -0.39 -1.46 16 24 C 0.07 0.85 6.71 -39.16 -0.26 0.59 16 25 O -0.49 -5.04 13.29 -34.26 -0.46 -5.50 16 26 C 0.13 1.82 6.71 -38.58 -0.26 1.57 16 27 O -0.47 -6.90 12.40 -40.87 -0.51 -7.41 16 28 C 0.15 2.21 4.90 -5.21 -0.03 2.18 16 29 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.10 2.34 4.65 -52.49 -0.24 2.10 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.09 1.46 8.05 -52.49 -0.42 1.03 16 33 H 0.08 1.62 6.42 -51.93 -0.33 1.29 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.50 7.07 -51.93 -0.37 1.13 16 37 H 0.14 1.27 7.13 -52.49 -0.37 0.90 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.39 2.09 9.06 45.56 0.41 2.51 16 41 H 0.39 4.10 9.06 45.56 0.41 4.51 16 42 H 0.09 1.16 5.15 -51.93 -0.27 0.90 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -32.04 351.27 -8.51 -40.54 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.23 Total: 10.52 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -5.65 Total: -18.72 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.26 Total: -29.92 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.99 Total: -23.61 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.18 Total: 15.90 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.04 -8.51 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634852857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.168 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds