Wall clock time and date at job start Sat Apr 11 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46978 * 272.08813 * 3 2 1 5 5 H 1.48496 * 109.47330 * 32.08824 * 3 2 1 6 6 H 1.48492 * 109.46854 * 152.09024 * 3 2 1 7 7 C 1.39937 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00628 * 339.89798 * 7 2 1 9 9 C 1.41396 * 119.99944 * 159.90314 * 7 2 1 10 10 C 1.40448 * 119.96760 * 330.77606 * 9 7 2 11 11 C 1.37603 * 119.54397 * 180.27791 * 10 9 7 12 12 C 1.38374 * 119.99104 * 0.18145 * 11 10 9 13 13 C 1.39256 * 121.04758 * 359.90933 * 12 11 10 14 14 C 1.37091 * 119.98541 * 359.53059 * 13 12 11 15 15 C 1.50558 * 122.99680 * 181.01566 * 14 13 12 16 16 C 1.52786 * 110.88141 * 339.71831 * 15 14 13 17 17 N 1.47246 * 107.86283 * 47.37266 * 16 15 14 18 18 C 1.34772 * 121.34583 * 115.95907 * 17 16 15 19 19 O 1.21592 * 119.99573 * 4.52254 * 18 17 16 20 20 C 1.47541 * 120.00129 * 184.52405 * 18 17 16 21 21 C 1.39809 * 120.16656 * 309.03701 * 20 18 17 22 22 C 1.37741 * 119.99988 * 180.29712 * 21 20 18 23 23 C 1.38546 * 120.34865 * 359.45354 * 22 21 20 24 24 C 1.38439 * 120.33164 * 0.25511 * 23 22 21 25 25 O 1.35999 * 120.00076 * 180.02562 * 24 23 22 26 26 C 1.39175 * 119.98950 * 0.02562 * 24 23 22 27 27 O 1.35740 * 120.16984 * 180.02562 * 26 24 23 28 28 C 1.46669 * 117.31164 * 296.23678 * 17 16 15 29 29 H 0.96999 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.22348 * 0.26708 * 10 9 7 31 31 H 1.07996 * 120.00188 * 180.16480 * 11 10 9 32 32 H 1.07994 * 119.47900 * 179.88010 * 12 11 10 33 33 H 1.09004 * 109.19802 * 219.36062 * 15 14 13 34 34 H 1.09002 * 109.16112 * 100.05322 * 15 14 13 35 35 H 1.08992 * 109.78361 * 287.78113 * 16 15 14 36 36 H 1.09002 * 109.78803 * 166.95851 * 16 15 14 37 37 H 1.08000 * 119.99545 * 0.04555 * 21 20 18 38 38 H 1.08002 * 119.82698 * 179.72976 * 22 21 20 39 39 H 1.07993 * 119.83573 * 180.27873 * 23 22 21 40 40 H 0.96694 * 113.99715 * 89.99902 * 25 24 23 41 41 H 0.96706 * 113.99590 * 89.99985 * 27 26 24 42 42 H 1.08996 * 109.42947 * 164.22403 * 28 17 16 43 43 H 1.08998 * 109.42689 * 284.06816 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4455 2.0719 -1.3992 5 1 1.4625 2.6395 0.7437 6 1 3.5611 1.4278 0.6553 7 6 2.0079 -1.2119 0.0005 8 1 1.5173 -2.1186 0.3224 9 6 3.3573 -1.2494 -0.4202 10 6 3.8221 -0.3247 -1.3697 11 6 5.1355 -0.3728 -1.7772 12 6 5.9872 -1.3300 -1.2547 13 6 5.5388 -2.2539 -0.3142 14 6 4.2374 -2.2179 0.1152 15 6 3.6870 -3.1686 1.1448 16 6 4.5584 -4.4189 1.2524 17 7 5.9625 -3.9845 1.3426 18 6 6.7009 -4.2238 2.4444 19 8 6.2368 -4.8804 3.3565 20 6 8.0724 -3.6890 2.5437 21 6 8.9866 -3.9028 1.5077 22 6 10.2680 -3.4073 1.6068 23 6 10.6552 -2.6863 2.7247 24 6 9.7597 -2.4611 3.7561 25 8 10.1468 -1.7520 4.8501 26 6 8.4632 -2.9604 3.6732 27 8 7.5820 -2.7413 4.6821 28 6 6.5231 -3.2754 0.1876 29 1 -0.4850 0.8400 -0.0004 30 1 3.1531 0.4188 -1.7772 31 1 5.5014 0.3363 -2.5049 32 1 7.0160 -1.3615 -1.5818 33 1 2.6761 -3.4598 0.8596 34 1 3.6563 -2.6688 2.1130 35 1 4.4210 -5.0415 0.3684 36 1 4.2882 -4.9813 2.1462 37 1 8.6892 -4.4600 0.6317 38 1 10.9732 -3.5778 0.8068 39 1 11.6606 -2.2978 2.7917 40 1 9.9961 -0.7999 4.7752 41 1 7.0640 -1.9307 4.5828 42 1 7.4456 -2.7751 0.4822 43 1 6.7368 -3.9896 -0.6075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634852857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:38 Heat of formation + Delta-G solvation = -88.540095 kcal Electronic energy + Delta-G solvation = -29347.271017 eV Core-core repulsion = 25321.538014 eV Total energy + Delta-G solvation = -4025.733004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92111 -40.72363 -39.67077 -37.97195 -37.52811 -37.04855 -35.52935 -33.92440 -32.46949 -31.67880 -30.58245 -30.22368 -27.18602 -26.67338 -25.24161 -24.08955 -23.48969 -22.32910 -21.91172 -20.43771 -19.43422 -19.03346 -18.94990 -17.86214 -17.68108 -17.36893 -17.21622 -16.67100 -16.52368 -16.07399 -15.77977 -15.51002 -15.37504 -15.04788 -14.94059 -14.68370 -14.53619 -14.18076 -13.68864 -13.55976 -13.42337 -13.33447 -13.22753 -13.07163 -12.95223 -12.59315 -12.55617 -12.33465 -12.27259 -11.83103 -11.65959 -11.58926 -11.20374 -11.00098 -10.84818 -9.97282 -9.73856 -9.62145 -9.33549 -9.18275 -8.89750 -6.45723 -0.17789 0.11036 0.80500 0.80755 1.23827 1.38444 1.45112 1.51623 1.89486 2.09579 2.49823 2.59716 3.03580 3.14395 3.42627 3.45036 3.85537 4.01356 4.05550 4.12969 4.18287 4.29494 4.33949 4.40353 4.52322 4.53458 4.59468 4.71539 4.73908 4.79351 4.92468 4.96012 5.08619 5.13056 5.13294 5.21209 5.29577 5.30899 5.43038 5.67375 5.69308 5.85959 5.94546 6.02458 6.21426 6.36317 6.46968 6.49601 6.78565 6.85331 6.87262 7.01091 8.18152 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.003556 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.751286 B = 7871.028674 C = 8039.995959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.049 3.951 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.072 3.928 10 C -0.261 4.261 11 C -0.084 4.084 12 C -0.214 4.214 13 C -0.070 4.070 14 C -0.174 4.174 15 C -0.064 4.064 16 C 0.120 3.880 17 N -0.598 5.598 18 C 0.562 3.438 19 O -0.573 6.573 20 C -0.159 4.159 21 C -0.083 4.083 22 C -0.101 4.101 23 C -0.104 4.104 24 C 0.069 3.931 25 O -0.499 6.499 26 C 0.101 3.899 27 O -0.500 6.500 28 C 0.151 3.849 29 H 0.291 0.709 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.157 0.843 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.408 0.592 41 H 0.400 0.600 42 H 0.115 0.885 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.116 -1.053 -1.033 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.165 4.165 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.070 3.930 10 C -0.280 4.280 11 C -0.102 4.102 12 C -0.233 4.233 13 C -0.070 4.070 14 C -0.176 4.176 15 C -0.102 4.102 16 C -0.002 4.002 17 N -0.329 5.329 18 C 0.352 3.648 19 O -0.453 6.453 20 C -0.163 4.163 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.122 4.122 24 C 0.024 3.976 25 O -0.312 6.312 26 C 0.055 3.945 27 O -0.311 6.311 28 C 0.030 3.970 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.175 0.825 38 H 0.196 0.804 39 H 0.184 0.816 40 H 0.267 0.733 41 H 0.258 0.742 42 H 0.133 0.867 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 21.942 -2.383 -0.080 22.071 hybrid contribution -1.596 1.716 0.060 2.344 sum 20.346 -0.667 -0.021 20.357 Atomic orbital electron populations 1.69747 1.09167 1.31235 1.37508 1.26762 0.95171 1.04059 0.90550 0.85535 0.79183 0.77002 0.79404 1.18275 1.20953 1.18302 1.19520 0.95311 0.95755 1.40507 0.91884 1.17890 0.92359 0.92150 0.90622 1.21144 0.97700 1.05006 1.04196 1.20918 0.92781 0.98022 0.98432 1.20745 1.00374 0.99048 1.03176 1.19611 0.93079 0.96984 0.97367 1.19533 0.93594 1.02211 1.02237 1.20334 0.98660 0.94399 0.96774 1.21613 0.79593 0.95920 1.03109 1.48048 1.12536 1.56110 1.16221 1.18468 0.85827 0.79550 0.80973 1.90771 1.73555 1.41427 1.39533 1.20194 0.94523 1.04852 0.96686 1.21588 0.93326 0.98494 0.96772 1.21436 0.95536 0.96232 0.98632 1.21880 1.00621 0.98314 0.91429 1.18793 0.91111 0.98694 0.89034 1.84874 1.84672 1.24826 1.36790 1.19116 0.89835 0.98726 0.86873 1.84840 1.54394 1.48230 1.43659 1.20877 0.95637 0.93238 0.87288 0.89835 0.89024 0.85533 0.84070 0.91589 0.93972 0.89215 0.89960 0.82542 0.80420 0.81621 0.73331 0.74213 0.86709 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.44 13.93 21.82 0.30 -46.13 16 2 C 0.05 2.59 5.37 85.25 0.46 3.05 16 3 Si 0.96 42.60 24.61 68.60 1.69 44.29 16 4 H -0.26 -10.72 6.52 99.48 0.65 -10.07 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.67 7.07 99.48 0.70 -10.96 16 7 C -0.48 -26.18 8.80 23.46 0.21 -25.97 16 8 H 0.06 3.68 6.47 -2.91 -0.02 3.66 16 9 C 0.07 3.51 5.12 -21.19 -0.11 3.40 16 10 C -0.26 -11.71 7.32 22.66 0.17 -11.54 16 11 C -0.08 -3.04 10.03 22.15 0.22 -2.82 16 12 C -0.21 -6.80 9.62 22.55 0.22 -6.58 16 13 C -0.07 -2.38 5.81 -19.96 -0.12 -2.50 16 14 C -0.17 -7.39 5.82 -19.40 -0.11 -7.51 16 15 C -0.06 -2.58 5.29 29.73 0.16 -2.42 16 16 C 0.12 4.00 6.45 86.17 0.56 4.56 16 17 N -0.60 -18.27 2.94 -828.42 -2.44 -20.71 16 18 C 0.56 18.57 6.94 86.70 0.60 19.17 16 19 O -0.57 -23.90 16.12 2.62 0.04 -23.86 16 20 C -0.16 -4.14 4.95 -20.02 -0.10 -4.24 16 21 C -0.08 -1.41 7.50 22.53 0.17 -1.24 16 22 C -0.10 -1.15 10.02 22.23 0.22 -0.93 16 23 C -0.10 -1.41 9.97 22.39 0.22 -1.18 16 24 C 0.07 1.40 6.71 22.54 0.15 1.55 16 25 O -0.50 -9.26 13.29 -79.65 -1.06 -10.32 16 26 C 0.10 2.67 6.71 22.92 0.15 2.83 16 27 O -0.50 -14.92 12.40 -69.66 -0.86 -15.79 16 28 C 0.15 3.80 4.90 85.53 0.42 4.22 16 29 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 30 H 0.09 4.22 4.65 -2.91 -0.01 4.21 16 31 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 32 H 0.14 3.23 8.05 -2.91 -0.02 3.21 16 33 H 0.07 2.85 6.42 -2.38 -0.02 2.83 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.08 2.87 7.07 -2.39 -0.02 2.86 16 37 H 0.16 1.97 7.13 -2.91 -0.02 1.95 16 38 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.41 3.50 9.06 -74.06 -0.67 2.83 16 41 H 0.40 8.92 9.06 -74.05 -0.67 8.25 16 42 H 0.12 2.37 5.15 -2.39 -0.01 2.35 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.85 351.27 0.86 -74.99 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.30 Total: 25.67 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.49 Total: -28.15 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -2.13 Total: -66.84 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -1.88 Total: -49.96 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.69 Total: 44.29 kcal Total: -75.85 0.86 -74.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634852857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.553 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds