Wall clock time and date at job start Sat Apr 11 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48499 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46795 * 300.00267 * 3 2 1 6 6 H 1.48495 * 109.47218 * 59.99926 * 3 2 1 7 7 C 1.39946 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99723 * 197.85974 * 7 2 1 9 9 C 1.41395 * 120.00258 * 17.85155 * 7 2 1 10 10 C 1.40709 * 120.24380 * 204.37747 * 9 7 2 11 11 C 1.37619 * 119.74627 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24497 * 0.02562 * 11 10 9 13 13 S 1.76203 * 119.74765 * 179.97438 * 12 11 10 14 14 O 1.42095 * 106.40376 * 336.45862 * 13 12 11 15 15 O 1.42100 * 106.40078 * 203.53759 * 13 12 11 16 16 N 1.65601 * 107.21955 * 89.99752 * 13 12 11 17 17 C 1.47425 * 125.64681 * 90.02290 * 16 13 12 18 18 C 1.54910 * 104.92748 * 204.15193 * 17 16 13 19 19 C 1.55148 * 101.58576 * 322.93908 * 18 17 16 20 20 H 1.09003 * 110.72281 * 276.95924 * 19 18 17 21 21 C 1.52998 * 110.72232 * 153.86041 * 19 18 17 22 22 C 1.52999 * 109.46889 * 66.45574 * 21 19 18 23 23 C 1.53004 * 109.47176 * 180.02562 * 22 21 19 24 24 O 1.42899 * 109.47141 * 180.02562 * 23 22 21 25 25 C 1.47288 * 125.79320 * 270.02336 * 16 13 12 26 26 C 1.38630 * 120.50260 * 0.25140 * 12 11 10 27 27 C 1.37620 * 120.24887 * 359.44998 * 26 12 11 28 28 H 0.96995 * 120.00595 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.13281 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87848 * 180.02562 * 11 10 9 31 31 H 1.09005 * 110.36617 * 85.26592 * 17 16 13 32 32 H 1.08994 * 110.37159 * 323.04998 * 17 16 13 33 33 H 1.09000 * 111.00019 * 81.01244 * 18 17 16 34 34 H 1.08998 * 111.00725 * 204.85760 * 18 17 16 35 35 H 1.09005 * 109.47054 * 186.45268 * 21 19 18 36 36 H 1.08992 * 109.47573 * 306.45352 * 21 19 18 37 37 H 1.08996 * 109.47183 * 299.99586 * 22 21 19 38 38 H 1.09004 * 109.47173 * 59.99936 * 22 21 19 39 39 H 1.09005 * 109.46828 * 299.99731 * 23 22 21 40 40 H 1.08992 * 109.47512 * 59.99640 * 23 22 21 41 41 H 0.96696 * 113.99755 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.85788 * 59.50330 * 25 16 13 43 43 H 1.08994 * 110.00358 * 298.42978 * 25 16 13 44 44 H 1.08004 * 119.87708 * 179.70538 * 26 12 11 45 45 H 1.07995 * 120.13085 * 180.27843 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4069 -0.3764 10 6 1.8259 -3.6499 0.0821 11 6 1.1800 -4.8065 -0.2905 12 6 0.0668 -4.7501 -1.1149 13 16 -0.7498 -6.2393 -1.5845 14 8 0.2110 -7.2791 -1.4631 15 8 -1.4386 -5.9548 -2.7943 16 7 -1.9122 -6.5414 -0.4444 17 6 -3.3062 -6.0638 -0.4912 18 6 -3.7734 -6.0511 0.9857 19 6 -3.0711 -7.3161 1.5456 20 1 -3.6532 -8.2106 1.3235 21 6 -2.8387 -7.1843 3.0521 22 6 -4.1860 -7.1718 3.7768 23 6 -3.9536 -7.0393 5.2833 24 8 -5.2121 -7.0283 5.9602 25 6 -1.7283 -7.3311 0.7852 26 6 -0.4054 -3.5315 -1.5773 27 6 0.2211 -2.3617 -1.2125 28 1 -0.4851 0.8399 0.0004 29 1 2.6932 -3.6962 0.7241 30 1 1.5416 -5.7617 0.0606 31 1 -3.9215 -6.7461 -1.0778 32 1 -3.3491 -5.0590 -0.9113 33 1 -3.4269 -5.1531 1.4973 34 1 -4.8574 -6.1436 1.0534 35 1 -2.2449 -8.0283 3.4033 36 1 -2.3069 -6.2554 3.2577 37 1 -4.7797 -6.3279 3.4256 38 1 -4.7178 -8.1009 3.5712 39 1 -3.3597 -7.8831 5.6349 40 1 -3.4220 -6.1103 5.4886 41 1 -5.1410 -6.9462 6.9211 42 1 -0.9488 -6.8820 1.4006 43 1 -1.4566 -8.3561 0.5328 44 1 -1.2706 -3.4997 -2.2229 45 1 -0.1511 -1.4131 -1.5702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645817777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:53 Heat of formation + Delta-G solvation = -128.184663 kcal Electronic energy + Delta-G solvation = -27336.691108 eV Core-core repulsion = 23444.682938 eV Total energy + Delta-G solvation = -3892.008170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.82668 -37.57949 -37.21339 -36.49878 -35.12533 -34.09949 -34.05054 -30.27267 -30.17107 -29.48522 -29.14281 -25.82849 -25.29103 -22.29889 -21.73454 -21.42065 -21.12639 -20.22816 -18.47452 -17.64137 -17.56967 -17.22645 -16.57820 -16.07053 -15.58852 -15.52383 -14.83280 -14.49089 -14.16578 -13.94411 -13.63830 -13.36228 -13.27496 -13.11545 -12.89081 -12.46619 -12.36070 -12.31683 -12.18374 -11.79992 -11.58093 -11.48687 -11.41072 -11.30283 -11.23042 -11.20420 -11.05826 -10.92435 -10.78919 -10.68883 -10.53569 -10.40617 -10.20458 -9.77249 -9.61797 -9.51972 -8.60452 -7.96383 -7.71352 -7.16095 -4.81300 1.18561 2.24463 2.86215 2.88830 2.91830 2.94245 3.65032 3.67257 3.89914 4.23405 4.48080 4.53093 4.67178 4.71853 4.84529 5.01639 5.11454 5.16800 5.35282 5.37379 5.41985 5.42994 5.53986 5.62827 5.71149 5.72511 5.89560 5.92566 5.97922 6.05071 6.10007 6.12680 6.13517 6.32516 6.43900 6.60769 6.66791 6.75615 6.97329 7.04257 7.32958 7.34700 7.41396 7.62581 7.75985 7.95543 8.30790 8.50094 8.63942 9.75360 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.003418 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.192789 B = 8189.025584 C =10163.632012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.435 4.435 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.002 3.998 12 C -0.786 4.786 13 S 2.706 3.294 14 O -0.982 6.982 15 O -0.979 6.979 16 N -1.017 6.017 17 C 0.124 3.876 18 C -0.127 4.127 19 C -0.095 4.095 20 H 0.083 0.917 21 C -0.110 4.110 22 C -0.119 4.119 23 C 0.073 3.927 24 O -0.578 6.578 25 C 0.127 3.873 26 C -0.015 4.015 27 C -0.183 4.183 28 H 0.288 0.712 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.378 0.622 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -8.030 8.418 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.019 4.019 12 C -0.882 4.882 13 S 2.807 3.193 14 O -0.973 6.973 15 O -0.970 6.970 16 N -0.853 5.853 17 C -0.002 4.002 18 C -0.166 4.166 19 C -0.114 4.114 20 H 0.102 0.898 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.005 4.005 24 O -0.383 6.383 25 C 0.002 3.998 26 C -0.036 4.036 27 C -0.203 4.203 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.225 0.775 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.849 -8.503 6.993 13.521 hybrid contribution 0.732 1.511 1.109 2.012 sum -7.117 -6.991 8.102 12.852 Atomic orbital electron populations 1.69821 1.07923 1.30262 1.30810 1.26135 0.94891 1.02137 0.91813 0.86111 0.81058 0.79874 0.79009 1.17972 1.19215 1.19529 1.19972 0.98487 0.91170 1.36606 0.89413 1.17851 0.90031 0.92137 0.86409 1.21045 1.04417 0.92711 1.07764 1.20155 0.92201 0.97214 0.92284 1.29253 1.16246 1.16047 1.26667 1.00908 0.71814 0.74359 0.72212 1.93468 1.60496 1.56680 1.86628 1.93479 1.74621 1.86487 1.42447 1.58942 1.22793 1.65931 1.37591 1.21871 0.81654 0.99616 0.97020 1.22892 1.00160 0.98245 0.95266 1.22209 0.96068 0.98988 0.94180 0.89840 1.21515 0.96661 1.02880 0.93703 1.21517 0.98097 1.03279 0.92729 1.22248 0.85078 0.99794 0.93335 1.86471 1.30833 1.97217 1.23781 1.21695 0.97480 0.95388 0.85259 1.20248 0.96702 0.91691 0.94928 1.21335 1.00102 0.96826 1.02049 0.90046 0.88219 0.87898 0.91856 0.90644 0.90189 0.90316 0.91429 0.90986 0.90906 0.91339 0.93756 0.93492 0.77526 0.91546 0.91547 0.87985 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.03 10.95 55.55 0.61 -17.42 16 2 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 3 Si 0.92 16.92 29.60 -169.99 -5.03 11.88 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 6 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.43 -10.63 9.05 -37.74 -0.34 -10.98 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.14 3.53 5.57 -106.83 -0.60 2.93 16 10 C -0.24 -5.65 9.80 -38.87 -0.38 -6.03 16 11 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 12 C -0.79 -17.57 6.00 -39.29 -0.24 -17.81 16 13 S 2.71 54.15 5.94 -107.50 -0.64 53.51 16 14 O -0.98 -21.24 16.85 -57.17 -0.96 -22.20 16 15 O -0.98 -21.51 16.84 -57.17 -0.96 -22.47 16 16 N -1.02 -16.35 3.71 -111.22 -0.41 -16.76 16 17 C 0.12 1.69 6.97 -2.53 -0.02 1.68 16 18 C -0.13 -1.40 5.69 -24.59 -0.14 -1.54 16 19 C -0.09 -0.98 2.98 -88.79 -0.26 -1.25 16 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.11 -0.99 4.57 -26.73 -0.12 -1.12 16 22 C -0.12 -1.05 5.43 -26.73 -0.15 -1.19 16 23 C 0.07 0.61 7.05 37.16 0.26 0.87 16 24 O -0.58 -5.26 13.66 -35.23 -0.48 -5.74 16 25 C 0.13 1.70 6.61 -2.91 -0.02 1.68 16 26 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 27 C -0.18 -4.58 8.70 -38.87 -0.34 -4.92 16 28 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 29 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 34 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.69 7.49 -51.93 -0.39 0.30 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.38 1.71 9.12 45.56 0.42 2.13 16 42 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.10 2.22 7.59 -52.48 -0.40 1.82 16 45 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -31.14 380.83 -11.44 -42.58 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.11 Total: 8.06 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: -3.18 Total: -37.18 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.20 Total: -34.18 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -2.41 Total: -50.42 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.64 Total: 53.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.14 -11.44 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645817777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.605 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds