Wall clock time and date at job start Sat Apr 11 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48499 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46795 * 300.00267 * 3 2 1 6 6 H 1.48495 * 109.47218 * 59.99926 * 3 2 1 7 7 C 1.39946 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99723 * 197.85974 * 7 2 1 9 9 C 1.41395 * 120.00258 * 17.85155 * 7 2 1 10 10 C 1.40709 * 120.24380 * 204.37747 * 9 7 2 11 11 C 1.37619 * 119.74627 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24497 * 0.02562 * 11 10 9 13 13 S 1.76203 * 119.74765 * 179.97438 * 12 11 10 14 14 O 1.42095 * 106.40376 * 336.45862 * 13 12 11 15 15 O 1.42100 * 106.40078 * 203.53759 * 13 12 11 16 16 N 1.65601 * 107.21955 * 89.99752 * 13 12 11 17 17 C 1.47425 * 125.64681 * 90.02290 * 16 13 12 18 18 C 1.54910 * 104.92748 * 204.15193 * 17 16 13 19 19 C 1.55148 * 101.58576 * 322.93908 * 18 17 16 20 20 H 1.09003 * 110.72281 * 276.95924 * 19 18 17 21 21 C 1.52998 * 110.72232 * 153.86041 * 19 18 17 22 22 C 1.52999 * 109.46889 * 66.45574 * 21 19 18 23 23 C 1.53004 * 109.47176 * 180.02562 * 22 21 19 24 24 O 1.42899 * 109.47141 * 180.02562 * 23 22 21 25 25 C 1.47288 * 125.79320 * 270.02336 * 16 13 12 26 26 C 1.38630 * 120.50260 * 0.25140 * 12 11 10 27 27 C 1.37620 * 120.24887 * 359.44998 * 26 12 11 28 28 H 0.96995 * 120.00595 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.13281 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87848 * 180.02562 * 11 10 9 31 31 H 1.09005 * 110.36617 * 85.26592 * 17 16 13 32 32 H 1.08994 * 110.37159 * 323.04998 * 17 16 13 33 33 H 1.09000 * 111.00019 * 81.01244 * 18 17 16 34 34 H 1.08998 * 111.00725 * 204.85760 * 18 17 16 35 35 H 1.09005 * 109.47054 * 186.45268 * 21 19 18 36 36 H 1.08992 * 109.47573 * 306.45352 * 21 19 18 37 37 H 1.08996 * 109.47183 * 299.99586 * 22 21 19 38 38 H 1.09004 * 109.47173 * 59.99936 * 22 21 19 39 39 H 1.09005 * 109.46828 * 299.99731 * 23 22 21 40 40 H 1.08992 * 109.47512 * 59.99640 * 23 22 21 41 41 H 0.96696 * 113.99755 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.85788 * 59.50330 * 25 16 13 43 43 H 1.08994 * 110.00358 * 298.42978 * 25 16 13 44 44 H 1.08004 * 119.87708 * 179.70538 * 26 12 11 45 45 H 1.07995 * 120.13085 * 180.27843 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4069 -0.3764 10 6 1.8259 -3.6499 0.0821 11 6 1.1800 -4.8065 -0.2905 12 6 0.0668 -4.7501 -1.1149 13 16 -0.7498 -6.2393 -1.5845 14 8 0.2110 -7.2791 -1.4631 15 8 -1.4386 -5.9548 -2.7943 16 7 -1.9122 -6.5414 -0.4444 17 6 -3.3062 -6.0638 -0.4912 18 6 -3.7734 -6.0511 0.9857 19 6 -3.0711 -7.3161 1.5456 20 1 -3.6532 -8.2106 1.3235 21 6 -2.8387 -7.1843 3.0521 22 6 -4.1860 -7.1718 3.7768 23 6 -3.9536 -7.0393 5.2833 24 8 -5.2121 -7.0283 5.9602 25 6 -1.7283 -7.3311 0.7852 26 6 -0.4054 -3.5315 -1.5773 27 6 0.2211 -2.3617 -1.2125 28 1 -0.4851 0.8399 0.0004 29 1 2.6932 -3.6962 0.7241 30 1 1.5416 -5.7617 0.0606 31 1 -3.9215 -6.7461 -1.0778 32 1 -3.3491 -5.0590 -0.9113 33 1 -3.4269 -5.1531 1.4973 34 1 -4.8574 -6.1436 1.0534 35 1 -2.2449 -8.0283 3.4033 36 1 -2.3069 -6.2554 3.2577 37 1 -4.7797 -6.3279 3.4256 38 1 -4.7178 -8.1009 3.5712 39 1 -3.3597 -7.8831 5.6349 40 1 -3.4220 -6.1103 5.4886 41 1 -5.1410 -6.9462 6.9211 42 1 -0.9488 -6.8820 1.4006 43 1 -1.4566 -8.3561 0.5328 44 1 -1.2706 -3.4997 -2.2229 45 1 -0.1511 -1.4131 -1.5702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645817777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:53 Heat of formation + Delta-G solvation = -149.286077 kcal Electronic energy + Delta-G solvation = -27337.606134 eV Core-core repulsion = 23444.682938 eV Total energy + Delta-G solvation = -3892.923196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.80206 -39.40168 -38.19317 -37.89538 -36.82735 -35.82361 -34.95746 -32.08821 -31.32412 -31.13830 -30.12757 -27.63735 -26.12878 -23.45705 -23.24285 -22.91081 -22.43984 -21.08680 -19.94249 -19.44766 -18.75691 -18.32811 -18.06952 -17.22364 -17.09401 -16.50870 -16.21447 -15.85855 -15.33977 -15.27074 -15.01015 -14.80807 -14.60512 -14.18152 -14.10660 -14.01680 -13.84596 -13.61122 -13.29673 -13.20044 -13.17628 -13.07021 -12.93615 -12.89595 -12.62758 -12.55557 -12.16592 -11.99476 -11.95380 -11.70702 -11.57866 -11.49225 -11.37361 -11.33228 -11.24637 -10.81909 -9.92558 -9.76981 -9.57970 -8.89180 -6.66665 -0.39805 0.46099 1.03031 1.34997 1.40988 1.52170 2.10389 2.18431 2.51453 2.92360 3.19782 3.44122 3.49556 3.66653 3.82173 3.99997 4.15725 4.26631 4.28607 4.30949 4.39230 4.47193 4.56271 4.61708 4.66346 4.79752 4.84052 4.85475 4.90625 4.92155 5.00439 5.05560 5.08956 5.11017 5.20746 5.21929 5.32121 5.41425 5.47012 5.51237 5.56424 5.60151 5.75824 5.91346 6.12842 6.46759 6.66149 6.78693 6.92193 8.06120 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.003418 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.192789 B = 8189.025584 C =10163.632012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.256 4.256 11 C -0.001 4.001 12 C -0.798 4.798 13 S 2.734 3.266 14 O -0.997 6.997 15 O -1.000 7.000 16 N -1.016 6.016 17 C 0.111 3.889 18 C -0.121 4.121 19 C -0.084 4.084 20 H 0.104 0.896 21 C -0.104 4.104 22 C -0.116 4.116 23 C 0.070 3.930 24 O -0.598 6.598 25 C 0.115 3.885 26 C -0.021 4.021 27 C -0.207 4.207 28 H 0.299 0.701 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.396 0.604 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 -8.690 9.576 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.276 4.276 11 C -0.021 4.021 12 C -0.891 4.891 13 S 2.833 3.167 14 O -0.988 6.988 15 O -0.991 6.991 16 N -0.855 5.855 17 C -0.013 4.013 18 C -0.159 4.159 19 C -0.104 4.104 20 H 0.123 0.877 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.007 4.007 24 O -0.407 6.407 25 C -0.010 4.010 26 C -0.041 4.041 27 C -0.227 4.227 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.245 0.755 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.505 -9.147 8.171 14.925 hybrid contribution 0.837 1.606 0.783 1.972 sum -7.668 -7.542 8.953 13.994 Atomic orbital electron populations 1.69846 1.09353 1.31830 1.30700 1.27009 0.95589 1.05171 0.90705 0.85008 0.79482 0.75121 0.79340 1.17749 1.18700 1.18420 1.20254 0.98915 0.92063 1.37839 0.89021 1.18195 0.90605 0.93327 0.87081 1.21277 1.05191 0.92760 1.08401 1.20428 0.91966 0.97783 0.91939 1.29726 1.16632 1.16983 1.25775 0.99988 0.71616 0.73079 0.72066 1.93439 1.61731 1.56565 1.87024 1.93445 1.74905 1.86564 1.44179 1.58611 1.22871 1.65987 1.37999 1.22185 0.80465 0.99451 0.99246 1.22885 1.01752 0.98184 0.93114 1.22212 0.94295 0.99399 0.94479 0.87733 1.21456 0.97013 1.02946 0.92785 1.21467 0.97619 1.03090 0.93148 1.22277 0.85008 1.00372 0.93044 1.86416 1.31386 1.97272 1.25583 1.22025 0.99380 0.95283 0.84325 1.20422 0.96865 0.91871 0.94938 1.21350 1.01083 0.96984 1.03286 0.89010 0.86949 0.85816 0.89971 0.91846 0.91441 0.87692 0.90024 0.92099 0.91769 0.90914 0.92419 0.93561 0.75461 0.91949 0.90596 0.87051 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.08 10.95 21.83 0.24 -37.85 16 2 C 0.03 1.61 5.14 85.26 0.44 2.04 16 3 Si 0.99 34.40 29.60 68.60 2.03 36.43 16 4 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 6 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 7 C -0.46 -23.22 9.05 23.46 0.21 -23.00 16 8 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.11 5.83 5.57 -21.29 -0.12 5.71 16 10 C -0.26 -12.35 9.80 22.73 0.22 -12.13 16 11 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 12 C -0.80 -36.05 6.00 22.46 0.13 -35.92 16 13 S 2.73 108.22 5.94 -56.49 -0.34 107.88 16 14 O -1.00 -42.26 16.85 -128.00 -2.16 -44.41 16 15 O -1.00 -43.68 16.84 -128.00 -2.16 -45.83 16 16 N -1.02 -31.50 3.71 -505.79 -1.88 -33.38 16 17 C 0.11 2.89 6.97 86.86 0.61 3.49 16 18 C -0.12 -2.43 5.69 31.98 0.18 -2.24 16 19 C -0.08 -1.53 2.98 -9.61 -0.03 -1.55 16 20 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.10 -1.65 4.57 30.59 0.14 -1.51 16 22 C -0.12 -1.78 5.43 30.60 0.17 -1.61 16 23 C 0.07 1.03 7.05 71.98 0.51 1.54 16 24 O -0.60 -9.81 13.66 -148.98 -2.04 -11.85 16 25 C 0.11 2.85 6.61 86.68 0.57 3.43 16 26 C -0.02 -1.01 9.49 22.22 0.21 -0.80 16 27 C -0.21 -10.77 8.70 22.73 0.20 -10.57 16 28 H 0.30 12.65 8.30 -92.71 -0.77 11.88 16 29 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 30 H 0.12 4.96 7.60 -2.91 -0.02 4.94 16 31 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.54 8.02 -2.39 -0.02 1.52 16 34 H 0.10 1.59 8.13 -2.39 -0.02 1.58 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.06 1.10 7.49 -2.39 -0.02 1.08 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.40 2.91 9.12 -74.06 -0.68 2.24 16 42 H 0.06 1.60 7.82 -2.39 -0.02 1.58 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 5.00 7.59 -2.91 -0.02 4.98 16 45 H 0.11 5.90 6.16 -2.91 -0.02 5.88 16 Total: -1.00 -67.30 380.83 -2.32 -69.61 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.32 Total: 32.37 kcal Atomic # 6 Polarization: -76.64 SS G_CDS: 3.65 Total: -72.99 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.64 Total: -71.22 kcal Atomic # 8 Polarization: -95.74 SS G_CDS: -6.35 Total: -102.09 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: 108.22 SS G_CDS: -0.34 Total: 107.88 kcal Total: -67.30 -2.32 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645817777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.673 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds