Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 109.47603 * 2 1 4 4 C 1.50696 * 109.47263 * 239.98996 * 2 1 3 5 5 H 1.07998 * 120.00231 * 240.00567 * 4 2 1 6 6 C 1.37879 * 119.99824 * 60.00443 * 4 2 1 7 7 N 1.31521 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46965 * 120.00028 * 8 6 4 11 11 H 1.48498 * 109.47443 * 239.99990 * 8 6 4 12 12 C 1.50704 * 109.46697 * 119.99819 * 2 1 3 13 13 O 1.20819 * 120.00158 * 120.00181 * 12 2 1 14 14 O 1.34239 * 119.99812 * 299.99384 * 12 2 1 15 15 C 1.45196 * 116.99827 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46871 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00046 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99769 * 179.97438 * 16 15 14 19 19 C 1.38725 * 120.00030 * 180.02562 * 18 16 15 20 20 N 1.30982 * 126.35592 * 359.97290 * 19 18 16 21 21 N 1.28657 * 109.31579 * 179.75260 * 20 19 18 22 22 C 1.30137 * 109.51772 * 0.44787 * 21 20 19 23 23 C 1.50700 * 126.21818 * 179.82672 * 22 21 20 24 24 H 1.09003 * 110.41793 * 162.38024 * 23 22 21 25 25 C 1.54478 * 110.37139 * 284.68445 * 23 22 21 26 26 C 1.54510 * 104.06500 * 142.81210 * 25 23 22 27 27 C 1.54477 * 104.18108 * 359.93120 * 26 25 23 28 28 O 1.44415 * 110.37723 * 40.06677 * 23 22 21 29 29 O 1.34576 * 126.36315 * 179.97438 * 19 18 16 30 30 H 1.09003 * 109.47030 * 300.00645 * 1 2 3 31 31 H 1.09000 * 109.46351 * 60.00356 * 1 2 3 32 32 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99701 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47337 * 60.00451 * 15 14 12 35 35 H 1.09005 * 109.47302 * 299.99760 * 15 14 12 36 36 H 0.96996 * 120.00002 * 0.02562 * 18 16 15 37 37 H 1.09000 * 110.51268 * 24.16636 * 25 23 22 38 38 H 1.09007 * 110.63128 * 261.51455 * 25 23 22 39 39 H 1.09002 * 110.51305 * 118.64650 * 26 25 23 40 40 H 1.08994 * 110.51141 * 241.21979 * 26 25 23 41 41 H 1.09006 * 110.37498 * 94.92285 * 27 26 25 42 42 H 1.09000 * 110.37254 * 217.25804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6994 -0.2397 -2.4827 7 7 0.9429 0.8294 -2.6035 8 14 2.3226 -1.1200 -4.0077 9 1 3.1474 -2.2868 -3.6035 10 1 1.1678 -1.5871 -4.8163 11 1 3.1474 -0.1864 -4.8160 12 6 2.0323 -0.7104 1.2306 13 8 2.7269 -1.6927 1.1198 14 8 1.7080 -0.2516 2.4497 15 6 2.2275 -0.9855 3.5898 16 6 1.7625 -0.3288 4.8641 17 8 1.0618 0.6599 4.8160 18 7 2.1244 -0.8410 6.0570 19 6 1.6959 -0.2369 7.2300 20 7 0.9413 0.8296 7.3234 21 7 0.7410 1.1019 8.5648 22 6 1.3631 0.2322 9.3065 23 6 1.3850 0.2003 10.8130 24 1 1.7056 -0.7792 11.1680 25 6 2.3183 1.3026 11.3607 26 6 1.5991 1.8059 12.6323 27 6 0.3146 0.9508 12.7041 28 8 0.0809 0.5246 11.3418 29 8 1.9783 -0.6377 8.4833 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 0.7089 1.1609 -3.4845 34 1 3.3170 -0.9844 3.5568 35 1 1.8639 -2.0126 3.5571 36 1 2.6844 -1.6320 6.0954 37 1 2.4222 2.1101 10.6359 38 1 3.2948 0.8889 11.6127 39 1 2.2190 1.6388 13.5132 40 1 1.3496 2.8626 12.5370 41 1 0.4696 0.0866 13.3501 42 1 -0.5208 1.5506 13.0653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649879285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -130.181360 kcal Electronic energy + Delta-G solvation = -28184.201138 eV Core-core repulsion = 23745.813171 eV Total energy + Delta-G solvation = -4438.387968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.49709 -41.83702 -40.95849 -40.41827 -37.54096 -37.50840 -36.62579 -35.92623 -33.38395 -32.82999 -32.60817 -30.55904 -29.05818 -27.27931 -25.74736 -25.43986 -24.55981 -23.31502 -22.33223 -22.03557 -21.68928 -20.17225 -18.92100 -18.74335 -18.63876 -18.33398 -17.80780 -17.75079 -17.39151 -17.22856 -16.84404 -16.31125 -16.29726 -16.10139 -15.31340 -14.80393 -14.76431 -14.55258 -14.37856 -13.87636 -13.72898 -13.47528 -13.26488 -13.05830 -12.97885 -12.78972 -12.75473 -12.61062 -12.53001 -12.38174 -12.30037 -12.16162 -12.04438 -11.84794 -11.63091 -11.56310 -11.11871 -11.09179 -10.97226 -10.53496 -10.14811 -8.18663 -6.32820 -0.25892 -0.12404 0.89348 1.34441 1.37895 1.41481 1.44211 1.46789 1.59241 2.02321 2.45056 2.84267 2.92873 3.05657 3.11908 3.45771 3.61419 3.66847 3.86883 3.90342 3.97335 3.98941 4.16789 4.20187 4.28302 4.41388 4.65494 4.68249 4.68850 4.83914 4.89549 4.94011 4.97884 5.00283 5.14849 5.24905 5.41634 5.63919 5.67960 5.69410 5.87642 6.08705 6.48775 6.74617 6.95055 7.14543 7.36508 8.88133 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.045820 B = 0.001678 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.943886 B =16684.619118 C =17000.931976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.048 3.952 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.967 3.033 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.483 3.517 13 O -0.526 6.526 14 O -0.353 6.353 15 C 0.053 3.947 16 C 0.527 3.473 17 O -0.489 6.489 18 N -0.588 5.588 19 C 0.395 3.605 20 N -0.317 5.317 21 N -0.283 5.283 22 C 0.164 3.836 23 C 0.178 3.822 24 H 0.140 0.860 25 C -0.143 4.143 26 C -0.147 4.147 27 C 0.038 3.962 28 O -0.387 6.387 29 O -0.217 6.217 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.453 0.547 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -5.060 33.414 34.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.029 3.971 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.328 3.672 13 O -0.414 6.414 14 O -0.270 6.270 15 C -0.023 4.023 16 C 0.314 3.686 17 O -0.356 6.356 18 N -0.252 5.252 19 C 0.094 3.906 20 N -0.172 5.172 21 N -0.129 5.129 22 C -0.050 4.050 23 C 0.118 3.882 24 H 0.157 0.843 25 C -0.182 4.182 26 C -0.185 4.185 27 C -0.037 4.037 28 O -0.307 6.307 29 O -0.096 6.096 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.297 0.703 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.465 -3.530 32.691 33.183 hybrid contribution 1.203 -1.544 -0.659 2.065 sum 5.667 -5.074 32.032 32.922 Atomic orbital electron populations 1.21579 0.94675 1.00096 1.01731 1.18721 0.95755 0.96377 0.86237 0.93256 1.21300 1.32579 1.13351 0.90047 0.91702 1.25709 0.94900 0.95642 1.01832 1.69997 1.36749 1.23590 1.24684 0.85357 0.78253 0.78541 0.78620 1.19510 1.20123 1.20172 1.24756 0.76081 0.82646 0.83677 1.90490 1.36945 1.27054 1.86935 1.86644 1.70105 1.55479 1.14793 1.22687 1.02731 0.96768 0.80137 1.20838 0.79914 0.84195 0.83697 1.90947 1.34069 1.24873 1.85723 1.42204 1.52700 1.32266 0.98057 1.23395 0.94757 0.91404 0.81035 1.75296 1.17830 1.13032 1.11002 1.74354 1.18976 1.23474 0.96054 1.27896 0.93997 0.86205 0.96903 1.21453 0.86210 1.03052 0.77441 0.84311 1.23073 0.99977 0.97041 0.98060 1.22956 0.96516 1.00946 0.98035 1.23837 0.99145 0.99110 0.81610 1.89266 1.25342 1.87126 1.28930 1.84700 1.61236 1.49051 1.14652 0.94014 0.90486 0.94686 0.92342 0.84334 0.84460 0.70253 0.91888 0.86162 0.86906 0.90624 0.88950 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.90 71.98 0.64 -5.30 16 2 C 0.05 2.46 2.74 -12.28 -0.03 2.42 16 3 H 0.05 2.66 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -29.64 8.37 25.60 0.21 -29.42 16 5 H 0.06 3.69 6.76 -2.91 -0.02 3.67 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -50.98 11.32 21.45 0.24 -50.74 16 8 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 C 0.48 21.44 7.25 71.24 0.52 21.96 16 13 O -0.53 -24.01 15.21 21.98 0.33 -23.68 16 14 O -0.35 -13.44 9.66 -45.15 -0.44 -13.88 16 15 C 0.05 1.32 5.94 71.24 0.42 1.74 16 16 C 0.53 14.01 7.87 87.66 0.69 14.70 16 17 O -0.49 -18.90 15.22 15.79 0.24 -18.66 16 18 N -0.59 -10.96 5.39 -423.20 -2.28 -13.24 16 19 C 0.40 9.97 9.08 178.91 1.63 11.60 16 20 N -0.32 -10.83 10.46 -173.30 -1.81 -12.64 16 21 N -0.28 -8.81 12.20 -165.31 -2.02 -10.83 16 22 C 0.16 3.62 7.31 88.36 0.65 4.27 16 23 C 0.18 2.31 3.86 30.35 0.12 2.43 16 24 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 25 C -0.14 -1.21 6.62 31.61 0.21 -1.00 16 26 C -0.15 -0.77 7.08 31.61 0.22 -0.54 16 27 C 0.04 0.28 7.65 72.48 0.55 0.84 16 28 O -0.39 -6.63 11.32 -148.98 -1.69 -8.31 16 29 O -0.22 -4.36 10.90 -8.55 -0.09 -4.45 16 30 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 31 H 0.08 4.04 6.07 -2.39 -0.01 4.03 16 32 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.14 2.59 8.13 -2.39 -0.02 2.57 16 35 H 0.14 2.61 8.13 -2.38 -0.02 2.59 16 36 H 0.45 3.39 8.82 -92.71 -0.82 2.57 16 37 H 0.06 0.86 7.86 -2.39 -0.02 0.84 16 38 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.11 -0.04 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 42 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -82.85 367.87 1.06 -81.79 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.27 Total: 4.25 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 6.28 Total: 25.16 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -5.87 Total: -87.45 kcal Atomic # 8 Polarization: -67.33 SS G_CDS: -1.64 Total: -68.97 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -82.85 1.06 -81.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649879285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.387 kcal (2) G-P(sol) polarization free energy of solvation -82.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds