Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47184 * 270.00935 * 3 2 1 5 5 H 1.48502 * 109.46792 * 30.00552 * 3 2 1 6 6 H 1.48500 * 109.47227 * 150.00562 * 3 2 1 7 7 C 1.38650 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99935 * 185.06193 * 9 7 2 11 11 C 1.38899 * 120.06818 * 354.48449 * 10 9 7 12 12 C 1.38075 * 119.92619 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.07335 * 0.02562 * 12 11 10 14 14 C 1.38274 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96527 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.46981 * 90.00263 * 15 14 13 17 17 C 1.46905 * 110.99961 * 180.02562 * 16 15 14 18 18 H 1.08999 * 108.24379 * 37.72738 * 17 16 15 19 19 C 1.53300 * 108.33346 * 280.62572 * 17 16 15 20 20 C 1.51264 * 105.01910 * 145.12626 * 19 17 16 21 21 C 1.54647 * 109.56005 * 105.22936 * 20 19 17 22 22 S 1.82287 * 111.13285 * 320.51418 * 21 20 19 23 23 O 1.42100 * 107.93962 * 203.69588 * 22 21 20 24 24 O 1.42098 * 107.93832 * 74.41260 * 22 21 20 25 25 C 1.79151 * 105.82329 * 319.05440 * 22 21 20 26 26 C 1.44545 * 108.33652 * 155.00337 * 17 16 15 27 27 C 1.38119 * 120.06910 * 0.02562 * 14 13 12 28 28 H 0.96997 * 120.00482 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03258 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.96003 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.92942 * 180.27661 * 13 12 11 32 32 H 1.09005 * 109.47038 * 210.00112 * 15 14 13 33 33 H 1.08992 * 109.47267 * 329.99998 * 15 14 13 34 34 H 1.00901 * 110.99900 * 56.04676 * 16 15 14 35 35 H 1.08997 * 110.32677 * 264.00109 * 19 17 16 36 36 H 1.09002 * 110.32412 * 26.24810 * 19 17 16 37 37 H 1.08996 * 109.45927 * 345.19623 * 20 19 17 38 38 H 1.09004 * 109.44176 * 225.24702 * 20 19 17 39 39 H 1.09000 * 109.14538 * 200.09031 * 21 20 19 40 40 H 1.08994 * 109.10092 * 80.91138 * 21 20 19 41 41 H 1.08997 * 109.45164 * 329.23999 * 25 22 21 42 42 H 1.08996 * 109.42704 * 209.30803 * 25 22 21 43 43 H 1.09007 * 109.22309 * 305.69934 * 26 17 16 44 44 H 1.08993 * 109.23083 * 65.06716 * 26 17 16 45 45 H 1.08008 * 120.03812 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4968 2.0466 -1.4001 5 1 1.4469 2.6526 0.7002 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2006 -0.0011 10 6 3.9735 -2.4055 -0.1083 11 6 3.2234 -3.5744 -0.0958 12 6 3.8532 -4.7983 -0.2056 13 6 5.2296 -4.8610 -0.3274 14 6 5.9791 -3.6991 -0.3401 15 6 7.4785 -3.7719 -0.4736 16 7 7.8459 -3.7335 -1.8953 17 6 9.3035 -3.8033 -2.0644 18 1 9.7013 -4.4895 -1.3167 19 6 9.8874 -2.4116 -1.7956 20 6 11.2229 -2.6680 -1.1332 21 6 12.3623 -2.3959 -2.1428 22 16 11.9219 -2.9937 -3.8076 23 8 13.1279 -3.2307 -4.5208 24 8 10.9721 -2.0922 -4.3592 25 6 11.1078 -4.5704 -3.5609 26 6 9.5839 -4.3458 -3.3745 27 6 5.3551 -2.4718 -0.2307 28 1 -0.4851 0.8400 0.0004 29 1 2.1486 -3.5260 -0.0012 30 1 3.2704 -5.7075 -0.1964 31 1 5.7195 -5.8193 -0.4176 32 1 7.9307 -2.9244 0.0417 33 1 7.8380 -4.7005 -0.0304 34 1 7.4684 -2.9125 -2.3443 35 1 10.0268 -1.8720 -2.7323 36 1 9.2348 -1.8499 -1.1271 37 1 11.2709 -3.7054 -0.8024 38 1 11.3342 -2.0073 -0.2733 39 1 13.2660 -2.9049 -1.8076 40 1 12.5515 -1.3234 -2.1865 41 1 11.5146 -5.0540 -2.6729 42 1 11.2773 -5.2059 -4.4301 43 1 9.0644 -5.2975 -3.4876 44 1 9.2278 -3.6506 -4.1347 45 1 5.9410 -1.5645 -0.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649959401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -59.461183 kcal Electronic energy + Delta-G solvation = -27085.341152 eV Core-core repulsion = 23196.313056 eV Total energy + Delta-G solvation = -3889.028096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -39.73275 -39.07244 -37.28400 -36.77700 -36.39812 -34.48865 -33.40741 -32.39500 -30.72100 -29.39318 -28.18696 -26.34918 -25.25163 -24.04299 -22.67655 -21.71227 -21.20527 -20.47256 -19.01719 -17.76671 -17.48131 -17.18578 -17.10352 -16.21649 -15.83603 -15.23645 -15.20733 -14.98780 -14.73150 -14.36599 -14.11778 -14.01449 -13.80741 -13.66552 -13.51240 -13.00067 -12.84893 -12.64378 -12.54837 -12.43725 -12.37361 -12.25184 -12.05045 -11.91964 -11.53821 -11.43032 -11.29396 -11.05330 -10.82804 -10.80506 -10.77978 -10.67805 -10.55573 -10.17650 -9.41355 -8.88852 -8.57076 -8.18131 -7.39236 -6.42483 -4.09689 -0.42047 1.98075 2.25673 2.39252 3.20754 3.24679 3.25084 3.38325 3.43306 3.81836 3.99373 4.11373 4.22311 4.22793 4.34648 4.47387 4.58352 4.69440 4.82383 4.89304 4.95325 5.05441 5.09089 5.11434 5.20135 5.26897 5.34020 5.39128 5.59009 5.64180 5.66179 5.72111 5.85339 5.88691 5.94536 6.10066 6.21661 6.49385 6.74619 6.88328 7.06574 7.20617 7.29174 7.31178 7.58382 7.78733 8.02674 8.92832 9.54892 10.65287 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002414 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.085299 B =11595.591171 C =12608.260909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.158 3.842 11 C -0.217 4.217 12 C -0.079 4.079 13 C -0.181 4.181 14 C -0.051 4.051 15 C 0.105 3.895 16 N -0.680 5.680 17 C 0.074 3.926 18 H 0.081 0.919 19 C -0.218 4.218 20 C -0.100 4.100 21 C -0.607 4.607 22 S 2.423 3.577 23 O -0.953 6.953 24 O -0.934 6.934 25 C -0.621 4.621 26 C -0.093 4.093 27 C -0.185 4.185 28 H 0.279 0.721 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.351 0.649 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.444 -9.270 -2.678 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.107 3.893 11 C -0.237 4.237 12 C -0.097 4.097 13 C -0.200 4.200 14 C -0.052 4.052 15 C -0.023 4.023 16 N -0.311 5.311 17 C -0.036 4.036 18 H 0.099 0.901 19 C -0.256 4.256 20 C -0.139 4.139 21 C -0.736 4.736 22 S 2.605 3.395 23 O -0.950 6.950 24 O -0.931 6.931 25 C -0.751 4.751 26 C -0.131 4.131 27 C -0.205 4.205 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 24.388 -9.184 -3.517 26.296 hybrid contribution 0.292 1.148 1.086 1.607 sum 24.679 -8.036 -2.431 26.068 Atomic orbital electron populations 1.69641 1.05564 1.28482 1.48134 1.24457 0.95014 0.98799 0.95708 0.86185 0.80263 0.81479 0.78975 1.19846 1.20814 1.18458 1.20754 0.76881 0.96612 1.52280 0.87654 1.83569 1.22606 1.25666 1.80570 1.19045 0.91570 0.85556 0.93175 1.21319 1.01160 0.91989 1.09199 1.20806 0.94319 0.96707 0.97851 1.20470 0.93601 0.96871 1.09088 1.19141 0.93686 0.92629 0.99697 1.20850 0.92242 1.00799 0.88435 1.60723 1.08699 1.47849 1.13782 1.20551 0.89814 0.95034 0.98172 0.90138 1.23175 0.97635 0.99783 1.05056 1.21524 0.91186 1.03429 0.97733 1.30736 1.08598 1.13123 1.21149 1.07859 0.75524 0.78075 0.78007 1.93563 1.46509 1.85834 1.69103 1.93527 1.62466 1.61901 1.75194 1.30517 1.09339 1.22776 1.12509 1.20067 0.89549 1.04865 0.98661 1.20023 0.91995 0.97089 1.11372 0.91053 0.85039 0.87222 0.87456 0.94410 0.90558 0.82951 0.86906 0.88868 0.90069 0.89856 0.85182 0.84705 0.84920 0.83975 0.88155 0.88918 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.96 55.48 0.77 -24.57 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.55 28.62 -169.99 -4.86 16.68 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.39 -10.89 9.95 30.88 0.31 -10.59 16 8 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 9 O -0.22 -5.69 8.59 0.03 0.00 -5.69 16 10 C 0.16 3.57 6.65 -39.11 -0.26 3.31 16 11 C -0.22 -4.60 9.17 -39.40 -0.36 -4.96 16 12 C -0.08 -1.39 10.04 -39.61 -0.40 -1.78 16 13 C -0.18 -2.89 9.70 -39.54 -0.38 -3.28 16 14 C -0.05 -0.80 5.39 -104.65 -0.56 -1.36 16 15 C 0.10 1.21 5.51 -4.98 -0.03 1.19 16 16 N -0.68 -7.17 6.05 -112.06 -0.68 -7.85 16 17 C 0.07 0.56 1.78 -71.50 -0.13 0.44 16 18 H 0.08 0.49 6.35 -51.93 -0.33 0.16 16 19 C -0.22 -1.59 5.07 -27.45 -0.14 -1.73 16 20 C -0.10 -0.49 5.60 -26.74 -0.15 -0.64 16 21 C -0.61 -2.81 6.49 38.02 0.25 -2.57 16 22 S 2.42 17.35 4.89 -107.50 -0.53 16.82 16 23 O -0.95 -10.32 18.05 -57.93 -1.05 -11.36 16 24 O -0.93 -9.97 14.11 -57.93 -0.82 -10.79 16 25 C -0.62 -3.07 5.83 38.30 0.22 -2.84 16 26 C -0.09 -0.66 4.82 -29.53 -0.14 -0.80 16 27 C -0.18 -3.47 9.65 -39.39 -0.38 -3.85 16 28 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.13 2.94 5.64 -52.49 -0.30 2.65 16 30 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.04 0.41 6.96 -51.93 -0.36 0.05 16 33 H 0.08 0.79 7.97 -51.93 -0.41 0.37 16 34 H 0.35 4.03 8.52 -39.29 -0.33 3.69 16 35 H 0.11 0.94 4.47 -51.93 -0.23 0.71 16 36 H 0.09 0.75 6.84 -51.93 -0.36 0.39 16 37 H 0.08 0.26 6.41 -51.93 -0.33 -0.07 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.13 0.29 7.69 -51.74 -0.40 -0.11 16 42 H 0.14 0.56 8.14 -51.74 -0.42 0.14 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.77 7.12 -51.93 -0.37 0.40 16 45 H 0.11 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -34.45 363.31 -10.16 -44.60 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.22 Total: 4.49 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -2.25 Total: -27.82 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.10 Total: -32.41 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.86 Total: -27.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.68 kcal Atomic # 16 Polarization: 17.35 SS G_CDS: -0.53 Total: 16.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.45 -10.16 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649959401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.857 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds