Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47184 * 270.00935 * 3 2 1 5 5 H 1.48502 * 109.46792 * 30.00552 * 3 2 1 6 6 H 1.48500 * 109.47227 * 150.00562 * 3 2 1 7 7 C 1.38650 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99935 * 185.06193 * 9 7 2 11 11 C 1.38899 * 120.06818 * 354.48449 * 10 9 7 12 12 C 1.38075 * 119.92619 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.07335 * 0.02562 * 12 11 10 14 14 C 1.38274 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96527 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.46981 * 90.00263 * 15 14 13 17 17 C 1.46905 * 110.99961 * 180.02562 * 16 15 14 18 18 H 1.08999 * 108.24379 * 37.72738 * 17 16 15 19 19 C 1.53300 * 108.33346 * 280.62572 * 17 16 15 20 20 C 1.51264 * 105.01910 * 145.12626 * 19 17 16 21 21 C 1.54647 * 109.56005 * 105.22936 * 20 19 17 22 22 S 1.82287 * 111.13285 * 320.51418 * 21 20 19 23 23 O 1.42100 * 107.93962 * 203.69588 * 22 21 20 24 24 O 1.42098 * 107.93832 * 74.41260 * 22 21 20 25 25 C 1.79151 * 105.82329 * 319.05440 * 22 21 20 26 26 C 1.44545 * 108.33652 * 155.00337 * 17 16 15 27 27 C 1.38119 * 120.06910 * 0.02562 * 14 13 12 28 28 H 0.96997 * 120.00482 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03258 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.96003 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.92942 * 180.27661 * 13 12 11 32 32 H 1.09005 * 109.47038 * 210.00112 * 15 14 13 33 33 H 1.08992 * 109.47267 * 329.99998 * 15 14 13 34 34 H 1.00901 * 110.99900 * 56.04676 * 16 15 14 35 35 H 1.08997 * 110.32677 * 264.00109 * 19 17 16 36 36 H 1.09002 * 110.32412 * 26.24810 * 19 17 16 37 37 H 1.08996 * 109.45927 * 345.19623 * 20 19 17 38 38 H 1.09004 * 109.44176 * 225.24702 * 20 19 17 39 39 H 1.09000 * 109.14538 * 200.09031 * 21 20 19 40 40 H 1.08994 * 109.10092 * 80.91138 * 21 20 19 41 41 H 1.08997 * 109.45164 * 329.23999 * 25 22 21 42 42 H 1.08996 * 109.42704 * 209.30803 * 25 22 21 43 43 H 1.09007 * 109.22309 * 305.69934 * 26 17 16 44 44 H 1.08993 * 109.23083 * 65.06716 * 26 17 16 45 45 H 1.08008 * 120.03812 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4968 2.0466 -1.4001 5 1 1.4469 2.6526 0.7002 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2006 -0.0011 10 6 3.9735 -2.4055 -0.1083 11 6 3.2234 -3.5744 -0.0958 12 6 3.8532 -4.7983 -0.2056 13 6 5.2296 -4.8610 -0.3274 14 6 5.9791 -3.6991 -0.3401 15 6 7.4785 -3.7719 -0.4736 16 7 7.8459 -3.7335 -1.8953 17 6 9.3035 -3.8033 -2.0644 18 1 9.7013 -4.4895 -1.3167 19 6 9.8874 -2.4116 -1.7956 20 6 11.2229 -2.6680 -1.1332 21 6 12.3623 -2.3959 -2.1428 22 16 11.9219 -2.9937 -3.8076 23 8 13.1279 -3.2307 -4.5208 24 8 10.9721 -2.0922 -4.3592 25 6 11.1078 -4.5704 -3.5609 26 6 9.5839 -4.3458 -3.3745 27 6 5.3551 -2.4718 -0.2307 28 1 -0.4851 0.8400 0.0004 29 1 2.1486 -3.5260 -0.0012 30 1 3.2704 -5.7075 -0.1964 31 1 5.7195 -5.8193 -0.4176 32 1 7.9307 -2.9244 0.0417 33 1 7.8380 -4.7005 -0.0304 34 1 7.4684 -2.9125 -2.3443 35 1 10.0268 -1.8720 -2.7323 36 1 9.2348 -1.8499 -1.1271 37 1 11.2709 -3.7054 -0.8024 38 1 11.3342 -2.0073 -0.2733 39 1 13.2660 -2.9049 -1.8076 40 1 12.5515 -1.3234 -2.1865 41 1 11.5146 -5.0540 -2.6729 42 1 11.2773 -5.2059 -4.4301 43 1 9.0644 -5.2975 -3.4876 44 1 9.2278 -3.6506 -4.1347 45 1 5.9410 -1.5645 -0.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649959401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -85.238215 kcal Electronic energy + Delta-G solvation = -27086.458928 eV Core-core repulsion = 23196.313056 eV Total energy + Delta-G solvation = -3890.145872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94142 -40.11881 -38.48451 -37.77742 -37.04833 -35.25424 -34.44867 -33.98830 -31.86344 -30.89483 -28.91062 -27.35083 -26.86366 -25.01103 -23.18951 -23.12241 -22.15502 -21.59926 -19.65225 -19.54464 -18.89036 -17.90752 -17.71265 -16.89883 -16.81677 -16.69449 -16.25311 -15.95579 -15.78395 -15.59145 -15.50768 -14.92067 -14.80976 -14.47210 -14.41223 -14.19244 -14.14935 -13.89850 -13.49826 -13.28511 -13.19741 -13.08203 -13.02004 -12.90676 -12.58887 -12.46766 -12.37483 -12.27389 -11.95599 -11.91549 -11.85378 -11.54564 -11.32728 -11.27178 -11.06860 -10.90902 -9.72009 -9.25459 -9.03756 -8.49952 -6.22564 -0.91343 0.51806 0.73319 1.30438 1.34910 1.50634 1.94486 2.27349 2.72028 2.78136 2.88548 3.04194 3.17446 3.36980 3.53016 3.70120 3.86721 3.91744 4.01986 4.09690 4.13964 4.21853 4.35386 4.43352 4.47860 4.55659 4.62945 4.64190 4.71937 4.74421 4.84332 4.85184 4.95483 5.00779 5.14010 5.19874 5.28856 5.36422 5.37914 5.41746 5.70450 5.78370 5.79991 5.93629 6.14323 6.29620 6.42023 6.84746 7.60121 8.61917 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002414 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.085299 B =11595.591171 C =12608.260909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.398 4.398 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.241 4.241 12 C -0.080 4.080 13 C -0.160 4.160 14 C -0.039 4.039 15 C 0.109 3.891 16 N -0.689 5.689 17 C 0.075 3.925 18 H 0.110 0.890 19 C -0.223 4.223 20 C -0.101 4.101 21 C -0.589 4.589 22 S 2.412 3.588 23 O -0.999 6.999 24 O -0.982 6.982 25 C -0.603 4.603 26 C -0.096 4.096 27 C -0.185 4.185 28 H 0.284 0.716 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.341 0.659 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.173 0.827 42 H 0.153 0.847 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.330 -11.458 -1.536 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.260 4.260 12 C -0.098 4.098 13 C -0.178 4.178 14 C -0.040 4.040 15 C -0.019 4.019 16 N -0.319 5.319 17 C -0.034 4.034 18 H 0.128 0.872 19 C -0.262 4.262 20 C -0.139 4.139 21 C -0.721 4.721 22 S 2.601 3.399 23 O -0.996 6.996 24 O -0.980 6.980 25 C -0.736 4.736 26 C -0.135 4.135 27 C -0.204 4.204 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.178 0.822 40 H 0.155 0.845 41 H 0.191 0.809 42 H 0.171 0.829 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 28.315 -11.401 -2.413 30.619 hybrid contribution -0.736 1.508 0.726 1.828 sum 27.579 -9.892 -1.687 29.348 Atomic orbital electron populations 1.69727 1.06916 1.29553 1.50417 1.25275 0.95874 1.02142 0.95633 0.85215 0.78800 0.77450 0.79211 1.19220 1.19210 1.18659 1.20691 0.78206 0.96034 1.52490 0.90285 1.83508 1.21108 1.27527 1.83378 1.19636 0.93211 0.85029 0.95258 1.21326 1.00096 0.93558 1.11033 1.21145 0.95698 0.96105 0.96811 1.21008 0.92738 0.98706 1.05385 1.19676 0.96434 0.91145 0.96735 1.20896 0.88725 1.02809 0.89475 1.60735 1.10877 1.47432 1.12807 1.20705 0.87913 0.95727 0.99092 0.87194 1.23160 0.99155 0.99458 1.04436 1.21611 0.89337 1.05532 0.97435 1.30557 1.09877 1.13529 1.18103 1.07818 0.74335 0.78601 0.79098 1.93507 1.48084 1.86574 1.71473 1.93476 1.63306 1.63852 1.77317 1.30344 1.07308 1.20877 1.15055 1.20049 0.90979 1.04451 0.98000 1.20331 0.90399 0.99115 1.10597 0.90616 0.87839 0.84480 0.83397 0.93282 0.87760 0.84056 0.88530 0.89716 0.87075 0.89010 0.82193 0.84531 0.80936 0.82911 0.87688 0.91129 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.96 21.61 0.30 -55.52 16 2 C 0.01 0.52 5.49 84.83 0.47 0.98 16 3 Si 0.97 45.84 28.62 68.60 1.96 47.80 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.40 -23.67 9.95 67.92 0.68 -22.99 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 9 O -0.25 -13.49 8.59 -22.81 -0.20 -13.68 16 10 C 0.12 5.44 6.65 22.58 0.15 5.60 16 11 C -0.24 -10.56 9.17 22.39 0.21 -10.35 16 12 C -0.08 -2.67 10.04 22.25 0.22 -2.45 16 13 C -0.16 -4.45 9.70 22.30 0.22 -4.23 16 14 C -0.04 -1.11 5.39 -19.88 -0.11 -1.21 16 15 C 0.11 1.99 5.51 85.56 0.47 2.47 16 16 N -0.69 -12.02 6.05 -508.46 -3.07 -15.10 16 17 C 0.07 0.83 1.78 42.46 0.08 0.90 16 18 H 0.11 0.60 6.35 -2.39 -0.02 0.59 16 19 C -0.22 -2.61 5.07 30.13 0.15 -2.46 16 20 C -0.10 -0.52 5.60 30.59 0.17 -0.35 16 21 C -0.59 -3.41 6.49 72.54 0.47 -2.94 16 22 S 2.41 31.04 4.89 -56.49 -0.28 30.77 16 23 O -1.00 -21.03 18.05 -127.28 -2.30 -23.33 16 24 O -0.98 -21.38 14.11 -127.28 -1.80 -23.18 16 25 C -0.60 -3.80 5.83 72.72 0.42 -3.38 16 26 C -0.10 -1.08 4.82 28.78 0.14 -0.94 16 27 C -0.18 -6.78 9.65 22.39 0.22 -6.56 16 28 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.10 5.05 5.64 -2.91 -0.02 5.04 16 30 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.05 0.83 6.96 -2.38 -0.02 0.81 16 33 H 0.10 1.42 7.97 -2.39 -0.02 1.40 16 34 H 0.34 7.18 8.52 -89.69 -0.76 6.42 16 35 H 0.10 1.52 4.47 -2.39 -0.01 1.51 16 36 H 0.08 1.14 6.84 -2.39 -0.02 1.12 16 37 H 0.11 -0.06 6.41 -2.39 -0.02 -0.07 16 38 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.17 -0.30 7.69 -2.51 -0.02 -0.32 16 42 H 0.15 0.73 8.14 -2.51 -0.02 0.71 16 43 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.07 1.13 7.12 -2.39 -0.02 1.11 16 45 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -81.66 363.31 -1.17 -82.83 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.26 Total: 17.34 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.95 Total: -47.92 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -2.77 Total: -70.62 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -4.29 Total: -60.19 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.96 Total: 47.80 kcal Atomic # 16 Polarization: 31.04 SS G_CDS: -0.28 Total: 30.77 kcal Total: -81.66 -1.17 -82.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649959401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.412 kcal (2) G-P(sol) polarization free energy of solvation -81.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds