Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39896 * 125.74182 * 2 1 4 4 C 1.30290 * 109.22928 * 180.26228 * 3 2 1 5 5 C 1.41485 * 108.18783 * 359.97438 * 4 3 2 6 6 C 1.46772 * 126.51408 * 180.02562 * 5 4 3 7 7 O 1.21690 * 120.00012 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00409 * 359.97438 * 6 5 4 9 9 C 1.47062 * 136.05383 * 359.62062 * 8 6 5 10 10 C 1.53755 * 87.88663 * 152.96798 * 9 8 6 11 11 N 1.46505 * 114.08614 * 139.77900 * 10 9 8 12 12 C 1.34781 * 119.99730 * 111.56201 * 11 10 9 13 13 O 1.21281 * 120.00114 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99601 * 179.97438 * 12 11 10 15 15 S 1.81006 * 109.46676 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99753 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99678 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00301 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99749 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46871 * 59.99727 * 20 18 16 22 22 H 1.48498 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47139 * 299.99280 * 20 18 16 24 24 C 1.47060 * 136.05887 * 180.02562 * 8 6 5 25 25 C 1.34844 * 125.74990 * 180.30594 * 2 1 3 26 26 N 1.38010 * 126.44576 * 359.73775 * 25 2 1 27 27 H 1.09004 * 109.46681 * 269.69170 * 1 2 3 28 28 H 1.08994 * 109.47409 * 29.69081 * 1 2 3 29 29 H 1.09002 * 109.47012 * 149.69740 * 1 2 3 30 30 H 1.07997 * 125.90111 * 179.97438 * 4 3 2 31 31 H 1.09005 * 113.46892 * 267.70215 * 9 8 6 32 32 H 1.09000 * 113.47198 * 38.13656 * 9 8 6 33 33 H 1.08999 * 114.57521 * 272.66074 * 10 9 8 34 34 H 0.96994 * 120.00267 * 291.56342 * 11 10 9 35 35 H 1.08993 * 109.47409 * 299.99821 * 14 12 11 36 36 H 1.09002 * 109.47073 * 60.00360 * 14 12 11 37 37 H 0.96999 * 119.99627 * 180.02562 * 19 18 16 38 38 H 1.09006 * 113.46966 * 321.85416 * 24 8 6 39 39 H 1.09003 * 113.47329 * 92.30203 * 24 8 6 40 40 H 0.97009 * 120.00038 * 359.97438 * 26 25 2 41 41 H 0.96991 * 120.00275 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2822 1.1355 0.0000 4 6 3.5314 0.7652 -0.0056 5 6 3.5728 -0.6491 -0.0090 6 6 4.7774 -1.4875 -0.0149 7 8 4.6747 -2.7001 -0.0169 8 7 5.9973 -0.9146 -0.0183 9 6 6.5219 0.4593 -0.0244 10 6 7.7809 -0.0790 0.6751 11 7 9.0319 0.5101 0.1910 12 6 9.7483 1.3231 0.9924 13 8 9.3572 1.5674 2.1141 14 6 11.0354 1.9286 0.4946 15 16 11.7563 2.9644 1.7922 16 6 13.2055 3.5285 0.9635 17 1 13.4071 3.2103 -0.0487 18 6 14.0883 4.3808 1.6120 19 7 13.8428 4.7682 2.8459 20 14 15.6250 4.9783 0.7338 21 1 15.2369 5.7262 -0.4891 22 1 16.3952 5.8714 1.6362 23 1 16.4639 3.8128 0.3560 24 6 7.3896 -1.3881 -0.0248 25 6 2.2529 -1.0943 -0.0058 26 7 1.8309 -2.4084 -0.0078 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3634 0.8927 -0.5090 29 1 -0.3633 -0.8873 -0.5185 30 1 4.3872 1.4239 -0.0074 31 1 6.7133 0.8465 -1.0252 32 1 5.9426 1.1479 0.5907 33 1 7.7145 -0.1159 1.7624 34 1 9.3445 0.3151 -0.7062 35 1 11.7340 1.1336 0.2338 36 1 10.8334 2.5382 -0.3861 37 1 14.4596 5.3642 3.2988 38 1 7.5498 -2.2738 0.5902 39 1 7.8097 -1.4876 -1.0256 40 1 0.8827 -2.6133 -0.0044 41 1 2.4823 -3.1269 -0.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688592701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = 54.751421 kcal Electronic energy + Delta-G solvation = -25580.954924 eV Core-core repulsion = 21625.631866 eV Total energy + Delta-G solvation = -3955.323058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.71981 -40.56031 -38.87623 -37.62176 -35.30964 -33.73802 -33.42279 -32.43041 -30.32634 -29.17196 -28.13381 -27.25859 -26.12361 -25.48524 -23.13403 -21.71211 -21.03312 -20.56622 -19.50034 -18.01655 -17.84887 -17.34073 -16.84556 -16.60784 -16.27275 -16.06523 -15.85040 -15.00544 -14.82034 -14.75178 -14.67689 -14.16144 -13.89417 -13.52406 -13.37199 -13.23418 -13.13545 -13.04613 -12.90557 -12.50670 -12.31817 -11.99198 -11.65577 -11.19778 -11.17807 -11.05105 -11.03669 -10.77400 -10.08592 -9.83210 -9.47173 -9.41821 -9.07856 -9.03030 -8.92783 -8.25282 -8.19672 -6.50810 -6.21823 -3.92728 1.48162 1.81317 1.95485 2.54980 2.96177 3.05874 3.23651 3.23749 3.26783 3.29268 3.37123 3.72598 3.97792 4.17469 4.20251 4.42289 4.61029 4.64105 4.75469 4.86071 4.90441 4.97339 5.08709 5.13303 5.13419 5.14889 5.28264 5.41758 5.57733 5.68810 5.86167 5.89364 5.91406 6.12029 6.23664 6.50377 6.86136 6.99291 7.42380 7.54631 7.59145 7.63822 8.09069 8.34680 8.51990 9.23504 10.85470 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.001803 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.037617 B =15528.864565 C =16102.968173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.402 5.402 3 N -0.303 5.303 4 C 0.112 3.888 5 C -0.368 4.368 6 C 0.640 3.360 7 O -0.568 6.568 8 N -0.640 5.640 9 C 0.078 3.922 10 C 0.118 3.882 11 N -0.726 5.726 12 C 0.536 3.464 13 O -0.512 6.512 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.099 3.901 25 C 0.435 3.565 26 N -0.830 5.830 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.192 0.808 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.269 0.731 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.400 0.600 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.579 -13.524 -9.833 30.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.190 5.190 3 N -0.121 5.121 4 C -0.078 4.078 5 C -0.387 4.387 6 C 0.434 3.566 7 O -0.449 6.449 8 N -0.374 5.374 9 C -0.047 4.047 10 C 0.010 3.990 11 N -0.380 5.380 12 C 0.322 3.678 13 O -0.385 6.385 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.025 4.025 25 C 0.200 3.800 26 N -0.380 5.380 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.208 0.792 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.237 0.763 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.228 0.772 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -27.366 -12.704 -7.771 31.155 hybrid contribution 1.854 -0.946 -2.409 3.184 sum -25.512 -13.650 -10.180 30.672 Atomic orbital electron populations 1.21829 0.74087 1.04572 1.03525 1.48215 1.06501 1.02348 1.61898 1.77191 1.01816 1.05193 1.27927 1.24124 0.95320 0.93586 0.94810 1.19081 0.90361 0.93642 1.35604 1.16317 0.80013 0.85925 0.74329 1.90684 1.85900 1.14203 1.54115 1.48806 1.04325 1.09888 1.74417 1.23821 0.93617 0.85695 1.01553 1.22727 0.82998 0.92346 1.00905 1.45840 1.23495 1.50437 1.18243 1.20382 0.84833 0.77499 0.85061 1.90718 1.69949 1.58688 1.19162 1.23542 0.96475 1.03987 1.06501 1.85419 1.25553 1.56296 1.15993 1.22825 1.08580 1.34406 1.02676 0.90933 1.24988 0.98241 0.95355 0.94964 1.70005 1.36785 1.32515 1.10948 0.86228 0.81428 0.78673 0.79193 1.19942 1.20834 1.19944 1.23310 0.79612 0.98529 1.01035 1.17998 0.89408 0.81976 0.90630 1.41789 1.11274 1.02674 1.82254 0.90583 0.88576 0.90101 0.79161 0.89037 0.89461 0.84911 0.76333 0.89040 0.89019 0.92114 0.89587 0.89464 0.77158 0.73219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.24 59.85 0.67 1.08 16 2 N -0.40 -3.52 4.00 -66.82 -0.27 -3.79 16 3 N -0.30 -3.35 12.47 30.88 0.39 -2.97 16 4 C 0.11 1.17 11.13 -16.97 -0.19 0.98 16 5 C -0.37 -4.15 6.15 -104.82 -0.64 -4.79 16 6 C 0.64 8.00 8.04 -12.81 -0.10 7.90 16 7 O -0.57 -8.25 15.92 5.20 0.08 -8.17 16 8 N -0.64 -6.75 3.69 -186.61 -0.69 -7.44 16 9 C 0.08 0.69 6.95 -8.38 -0.06 0.63 16 10 C 0.12 1.21 4.63 -67.67 -0.31 0.90 16 11 N -0.73 -8.13 5.39 -53.47 -0.29 -8.42 16 12 C 0.54 9.02 7.85 -10.98 -0.09 8.93 16 13 O -0.51 -10.77 15.45 5.56 0.09 -10.69 16 14 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 15 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 16 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 17 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 20 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.10 0.90 8.38 -8.51 -0.07 0.83 16 25 C 0.44 4.15 7.98 -153.79 -1.23 2.92 16 26 N -0.83 -5.45 9.02 31.40 0.28 -5.17 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.11 7.47 -51.93 -0.39 -0.27 16 30 H 0.19 1.61 5.19 -52.49 -0.27 1.33 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.75 6.11 -51.93 -0.32 0.43 16 33 H 0.13 1.65 7.45 -51.93 -0.39 1.26 16 34 H 0.40 3.24 8.75 -40.82 -0.36 2.89 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 40 H 0.40 1.22 8.05 -40.82 -0.33 0.89 16 41 H 0.43 3.35 7.01 -40.82 -0.29 3.06 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -38.43 367.23 -7.81 -46.24 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.84 Total: 3.59 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.60 Total: 4.05 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.16 Total: -52.86 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.17 Total: -18.85 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.43 -7.81 -46.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.990 kcal (2) G-P(sol) polarization free energy of solvation -38.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds