Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39896 * 125.74182 * 2 1 4 4 C 1.30290 * 109.22928 * 180.26228 * 3 2 1 5 5 C 1.41485 * 108.18783 * 359.97438 * 4 3 2 6 6 C 1.46772 * 126.51408 * 180.02562 * 5 4 3 7 7 O 1.21690 * 120.00012 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00409 * 359.97438 * 6 5 4 9 9 C 1.47062 * 136.05383 * 359.62062 * 8 6 5 10 10 C 1.53755 * 87.88663 * 152.96798 * 9 8 6 11 11 N 1.46505 * 114.08614 * 139.77900 * 10 9 8 12 12 C 1.34781 * 119.99730 * 111.56201 * 11 10 9 13 13 O 1.21281 * 120.00114 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99601 * 179.97438 * 12 11 10 15 15 S 1.81006 * 109.46676 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99753 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99678 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00301 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99749 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46871 * 59.99727 * 20 18 16 22 22 H 1.48498 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47139 * 299.99280 * 20 18 16 24 24 C 1.47060 * 136.05887 * 180.02562 * 8 6 5 25 25 C 1.34844 * 125.74990 * 180.30594 * 2 1 3 26 26 N 1.38010 * 126.44576 * 359.73775 * 25 2 1 27 27 H 1.09004 * 109.46681 * 269.69170 * 1 2 3 28 28 H 1.08994 * 109.47409 * 29.69081 * 1 2 3 29 29 H 1.09002 * 109.47012 * 149.69740 * 1 2 3 30 30 H 1.07997 * 125.90111 * 179.97438 * 4 3 2 31 31 H 1.09005 * 113.46892 * 267.70215 * 9 8 6 32 32 H 1.09000 * 113.47198 * 38.13656 * 9 8 6 33 33 H 1.08999 * 114.57521 * 272.66074 * 10 9 8 34 34 H 0.96994 * 120.00267 * 291.56342 * 11 10 9 35 35 H 1.08993 * 109.47409 * 299.99821 * 14 12 11 36 36 H 1.09002 * 109.47073 * 60.00360 * 14 12 11 37 37 H 0.96999 * 119.99627 * 180.02562 * 19 18 16 38 38 H 1.09006 * 113.46966 * 321.85416 * 24 8 6 39 39 H 1.09003 * 113.47329 * 92.30203 * 24 8 6 40 40 H 0.97009 * 120.00038 * 359.97438 * 26 25 2 41 41 H 0.96991 * 120.00275 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2822 1.1355 0.0000 4 6 3.5314 0.7652 -0.0056 5 6 3.5728 -0.6491 -0.0090 6 6 4.7774 -1.4875 -0.0149 7 8 4.6747 -2.7001 -0.0169 8 7 5.9973 -0.9146 -0.0183 9 6 6.5219 0.4593 -0.0244 10 6 7.7809 -0.0790 0.6751 11 7 9.0319 0.5101 0.1910 12 6 9.7483 1.3231 0.9924 13 8 9.3572 1.5674 2.1141 14 6 11.0354 1.9286 0.4946 15 16 11.7563 2.9644 1.7922 16 6 13.2055 3.5285 0.9635 17 1 13.4071 3.2103 -0.0487 18 6 14.0883 4.3808 1.6120 19 7 13.8428 4.7682 2.8459 20 14 15.6250 4.9783 0.7338 21 1 15.2369 5.7262 -0.4891 22 1 16.3952 5.8714 1.6362 23 1 16.4639 3.8128 0.3560 24 6 7.3896 -1.3881 -0.0248 25 6 2.2529 -1.0943 -0.0058 26 7 1.8309 -2.4084 -0.0078 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3634 0.8927 -0.5090 29 1 -0.3633 -0.8873 -0.5185 30 1 4.3872 1.4239 -0.0074 31 1 6.7133 0.8465 -1.0252 32 1 5.9426 1.1479 0.5907 33 1 7.7145 -0.1159 1.7624 34 1 9.3445 0.3151 -0.7062 35 1 11.7340 1.1336 0.2338 36 1 10.8334 2.5382 -0.3861 37 1 14.4596 5.3642 3.2988 38 1 7.5498 -2.2738 0.5902 39 1 7.8097 -1.4876 -1.0256 40 1 0.8827 -2.6133 -0.0044 41 1 2.4823 -3.1269 -0.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688592701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = 23.967475 kcal Electronic energy + Delta-G solvation = -25582.289816 eV Core-core repulsion = 21625.631866 eV Total energy + Delta-G solvation = -3956.657950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43586 -41.46503 -40.08296 -38.61364 -35.95111 -34.87345 -34.53324 -34.03193 -31.44408 -30.22545 -28.94811 -27.94352 -27.58525 -26.81898 -24.00634 -22.55369 -21.76151 -21.71717 -20.31971 -19.74711 -18.65890 -18.12638 -17.94987 -17.46068 -17.31526 -16.83368 -16.74441 -16.65735 -16.25334 -16.15985 -15.40198 -15.34987 -14.91220 -14.66393 -14.43143 -14.30640 -13.94975 -13.70834 -13.65932 -13.53991 -13.39083 -13.12559 -13.11376 -12.83087 -12.59022 -12.30912 -12.07947 -11.96133 -11.70337 -11.08615 -11.06806 -10.83414 -10.20960 -10.08799 -10.06758 -9.77054 -8.90400 -8.60486 -8.30192 -6.07217 0.75067 1.17308 1.21312 1.31230 1.46978 1.49433 1.57949 1.63481 1.83542 2.31160 2.36617 2.56239 2.71718 3.04037 3.29094 3.37723 3.42409 3.76557 3.95536 3.99287 4.02154 4.16896 4.27698 4.36858 4.40538 4.45411 4.48648 4.58016 4.61164 4.65151 4.67662 4.92839 4.98321 5.33508 5.46573 5.48526 5.55972 6.20106 6.24201 6.45611 6.52886 6.69202 6.87106 7.11516 7.20455 7.29261 8.78493 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.001803 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.037617 B =15528.864565 C =16102.968173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.400 5.400 3 N -0.329 5.329 4 C 0.109 3.891 5 C -0.395 4.395 6 C 0.633 3.367 7 O -0.597 6.597 8 N -0.644 5.644 9 C 0.085 3.915 10 C 0.114 3.886 11 N -0.695 5.695 12 C 0.541 3.459 13 O -0.561 6.561 14 C -0.130 4.130 15 S -0.153 6.153 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.996 3.004 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.262 1.262 24 C 0.106 3.894 25 C 0.433 3.567 26 N -0.815 5.815 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.204 0.796 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.423 0.577 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.270 0.730 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.417 0.583 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.117 -14.278 -12.478 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.189 5.189 3 N -0.147 5.147 4 C -0.080 4.080 5 C -0.414 4.414 6 C 0.428 3.572 7 O -0.481 6.481 8 N -0.377 5.377 9 C -0.039 4.039 10 C 0.007 3.993 11 N -0.349 5.349 12 C 0.327 3.673 13 O -0.439 6.439 14 C -0.281 4.281 15 S 0.074 5.926 16 C -0.693 4.693 17 H 0.103 0.897 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.017 4.017 25 C 0.195 3.805 26 N -0.366 5.366 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.220 0.780 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.261 0.739 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.249 0.751 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -27.950 -13.485 -10.473 32.753 hybrid contribution 1.857 -0.824 -1.620 2.598 sum -26.093 -14.309 -12.093 32.122 Atomic orbital electron populations 1.22232 0.71599 1.06307 1.04877 1.48486 1.07765 1.01429 1.61180 1.77106 1.02299 1.06701 1.28641 1.24322 0.95683 0.93550 0.94494 1.19204 0.90809 0.94014 1.37390 1.16537 0.80725 0.85753 0.74151 1.90654 1.86403 1.15271 1.55749 1.48803 1.04386 1.10729 1.73825 1.23886 0.92150 0.85103 1.02716 1.22652 0.82915 0.93749 0.99982 1.45439 1.22905 1.48282 1.18316 1.20056 0.84542 0.77982 0.84737 1.90716 1.70983 1.60795 1.21369 1.23384 0.97369 1.03400 1.03986 1.85608 1.26860 1.58916 1.21244 1.23189 1.08700 1.34322 1.03075 0.89747 1.26102 1.01939 0.95460 0.95686 1.70179 1.38259 1.33491 1.12886 0.85035 0.76791 0.78350 0.78017 1.18636 1.20675 1.18710 1.23382 0.78868 0.97266 1.02232 1.18125 0.89304 0.83027 0.90024 1.41752 1.12300 1.01450 1.81078 0.89416 0.88106 0.87193 0.78004 0.86414 0.89281 0.87303 0.73885 0.86962 0.86693 0.92108 0.90115 0.86577 0.75125 0.73645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.24 127.77 1.44 1.99 16 2 N -0.40 -6.52 4.00 -365.30 -1.46 -7.98 16 3 N -0.33 -7.05 12.47 -56.22 -0.70 -7.75 16 4 C 0.11 2.23 11.13 85.72 0.95 3.19 16 5 C -0.39 -8.69 6.15 -19.99 -0.12 -8.81 16 6 C 0.63 15.47 8.04 86.47 0.70 16.17 16 7 O -0.60 -17.17 15.92 -4.32 -0.07 -17.24 16 8 N -0.64 -12.76 3.69 -862.53 -3.18 -15.94 16 9 C 0.09 1.36 6.95 83.26 0.58 1.93 16 10 C 0.11 2.19 4.63 45.56 0.21 2.40 16 11 N -0.69 -13.96 5.39 -441.48 -2.38 -16.34 16 12 C 0.54 17.67 7.85 87.66 0.69 18.35 16 13 O -0.56 -24.04 15.45 -3.03 -0.05 -24.09 16 14 C -0.13 -4.69 6.16 71.24 0.44 -4.25 16 15 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 16 C -0.55 -30.28 9.50 67.95 0.65 -29.63 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 18 C 0.01 0.72 5.49 84.86 0.47 1.19 16 19 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 20 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 C 0.11 1.72 8.38 83.18 0.70 2.41 16 25 C 0.43 7.80 7.98 132.69 1.06 8.86 16 26 N -0.81 -9.61 9.02 -54.58 -0.49 -10.10 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.00 7.47 -2.39 -0.02 -0.01 16 30 H 0.20 3.25 5.19 -2.91 -0.02 3.24 16 31 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.09 1.43 6.11 -2.39 -0.01 1.41 16 33 H 0.11 2.73 7.45 -2.39 -0.02 2.71 16 34 H 0.42 5.22 8.75 -92.71 -0.81 4.40 16 35 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 36 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 38 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.12 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.42 1.69 8.05 -92.70 -0.75 0.94 16 41 H 0.43 6.27 7.01 -92.71 -0.65 5.62 16 Total: -1.00 -86.74 367.23 -0.51 -87.25 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -1.08 Total: 18.00 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 7.75 Total: 13.79 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -7.92 Total: -113.23 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.12 Total: -41.32 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -86.74 -0.51 -87.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.219 kcal (2) G-P(sol) polarization free energy of solvation -86.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds