Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99771 * 2 1 4 4 O 1.21280 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00387 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47418 * 180.02562 * 5 3 2 7 7 C 1.76206 * 100.00070 * 180.02562 * 6 5 3 8 8 H 1.08005 * 119.99529 * 359.97438 * 7 6 5 9 9 C 1.38793 * 119.99900 * 179.97438 * 7 6 5 10 10 N 1.31628 * 120.00372 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99924 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47053 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47351 * 120.00154 * 11 9 7 14 14 H 1.48496 * 109.47574 * 240.00125 * 11 9 7 15 15 C 1.46504 * 120.00384 * 179.97438 * 2 1 3 16 16 C 1.53500 * 114.20514 * 300.00621 * 15 2 1 17 17 N 1.47074 * 87.98480 * 87.71276 * 16 15 2 18 18 C 1.34778 * 136.05522 * 207.07880 * 17 16 15 19 19 O 1.21280 * 120.00033 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99643 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.46943 * 180.02562 * 20 18 17 22 22 N 1.33233 * 125.52686 * 89.99782 * 21 20 18 23 23 C 1.30834 * 109.82996 * 180.02562 * 22 21 20 24 24 N 1.34429 * 108.07543 * 0.02562 * 23 22 21 25 25 H 0.97003 * 126.82753 * 179.97438 * 24 23 22 26 26 N 1.30708 * 125.52235 * 270.04470 * 21 20 18 27 27 C 1.47067 * 87.88541 * 27.34082 * 17 16 15 28 28 H 1.08995 * 109.47456 * 270.00481 * 1 2 3 29 29 H 1.09004 * 109.46853 * 30.00723 * 1 2 3 30 30 H 1.09007 * 109.46971 * 150.00031 * 1 2 3 31 31 H 1.09001 * 109.46927 * 300.00349 * 5 3 2 32 32 H 1.09001 * 109.47161 * 59.99851 * 5 3 2 33 33 H 0.96997 * 120.00639 * 180.02562 * 10 9 7 34 34 H 1.08996 * 113.28260 * 166.93379 * 15 2 1 35 35 H 1.08996 * 113.46886 * 332.93838 * 16 15 2 36 36 H 1.09000 * 113.52050 * 202.50143 * 16 15 2 37 37 H 1.08993 * 109.46656 * 60.00225 * 20 18 17 38 38 H 1.09000 * 109.47151 * 300.00224 * 20 18 17 39 39 H 1.07995 * 125.96739 * 179.74246 * 23 22 21 40 40 H 1.09000 * 113.46799 * 87.43468 * 27 17 16 41 41 H 1.08994 * 113.46580 * 217.87720 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5615 3.8480 -0.0012 7 6 1.4414 5.2083 -0.0010 8 1 0.3761 5.0304 -0.0011 9 6 1.9281 6.5080 -0.0009 10 7 3.2265 6.7247 -0.0013 11 14 0.7407 7.9500 -0.0014 12 1 -0.6548 7.4421 -0.0014 13 1 0.9658 8.7772 1.2111 14 1 0.9668 8.7771 -1.2138 15 6 2.1976 -1.2687 0.0006 16 6 1.9060 -2.1633 1.2134 17 7 0.7773 -2.7291 0.4591 18 6 -0.4051 -3.2996 0.7643 19 8 -0.7318 -3.4347 1.9244 20 6 -1.3213 -3.7694 -0.3363 21 6 -2.5675 -4.3641 0.2673 22 7 -3.6828 -3.6951 0.5567 23 6 -4.5691 -4.5101 1.0684 24 7 -4.0266 -5.7391 1.1171 25 1 -4.4474 -6.5478 1.4488 26 7 -2.7293 -5.6197 0.5925 27 6 1.5095 -2.4046 -0.7743 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8901 -0.5139 31 1 0.7591 2.5298 -0.8908 32 1 0.7584 2.5302 0.8891 33 1 3.5666 7.6331 -0.0008 34 1 3.2576 -1.1542 -0.2258 35 1 1.6005 -1.6071 2.0996 36 1 2.6953 -2.8859 1.4207 37 1 -0.8118 -4.5238 -0.9357 38 1 -1.5921 -2.9244 -0.9692 39 1 -5.5617 -4.2416 1.3987 40 1 2.1948 -3.1905 -1.0918 41 1 0.8663 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689640349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = 45.602880 kcal Electronic energy + Delta-G solvation = -26188.321787 eV Core-core repulsion = 22232.602018 eV Total energy + Delta-G solvation = -3955.719769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.09889 -42.01758 -40.32513 -38.91614 -35.71145 -34.57150 -34.35711 -32.78045 -31.75126 -30.59244 -29.08563 -27.77525 -27.60899 -26.90448 -23.87914 -23.40234 -21.84719 -20.71548 -19.85358 -19.39416 -19.24388 -18.41738 -18.18023 -17.16997 -17.00442 -16.86943 -16.78492 -16.62402 -16.15748 -16.02397 -15.71737 -14.82197 -14.67483 -14.61470 -14.45367 -14.21217 -14.19612 -13.57499 -13.41428 -13.19807 -13.14424 -13.07239 -13.03366 -12.90911 -12.85986 -12.58154 -12.07058 -11.70101 -11.28624 -11.14554 -11.10037 -11.00073 -10.95941 -10.63688 -10.25617 -9.84954 -9.72335 -8.64980 -8.33645 -6.11095 0.61289 1.25185 1.42243 1.45209 1.48425 1.52197 1.56726 1.58243 1.82867 2.02310 2.07138 2.28246 3.00599 3.13139 3.25673 3.32644 3.41464 3.64805 3.73567 3.87414 4.10629 4.14316 4.25358 4.27940 4.37573 4.42201 4.47347 4.53478 4.55546 4.63864 4.66856 4.74510 4.84837 4.89627 5.21172 5.33103 5.43710 5.53336 6.18577 6.21829 6.24230 6.62217 7.02189 7.07655 7.08065 7.09927 8.75671 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.002225 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.185660 B =12581.851962 C =13889.961759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.590 5.590 3 C 0.540 3.460 4 O -0.554 6.554 5 C -0.126 4.126 6 S -0.146 6.146 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.014 3.986 10 N -0.910 5.910 11 Si 0.997 3.003 12 H -0.258 1.258 13 H -0.275 1.275 14 H -0.272 1.272 15 C 0.099 3.901 16 C 0.090 3.910 17 N -0.645 5.645 18 C 0.550 3.450 19 O -0.585 6.585 20 C -0.039 4.039 21 C 0.230 3.770 22 N -0.575 5.575 23 C 0.274 3.726 24 N -0.475 5.475 25 H 0.458 0.542 26 N -0.340 5.340 27 C 0.105 3.895 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.271 0.729 34 H 0.130 0.870 35 H 0.054 0.946 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.270 0.730 40 H 0.141 0.859 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 -27.455 -3.522 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.328 3.672 4 O -0.431 6.431 5 C -0.277 4.277 6 S 0.081 5.919 7 C -0.693 4.693 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.819 3.181 12 H -0.181 1.181 13 H -0.201 1.201 14 H -0.198 1.198 15 C -0.006 4.006 16 C -0.034 4.034 17 N -0.381 5.381 18 C 0.340 3.660 19 O -0.464 6.464 20 C -0.080 4.080 21 C -0.053 4.053 22 N -0.304 5.304 23 C -0.024 4.024 24 N -0.195 5.195 25 H 0.306 0.694 26 N -0.170 5.170 27 C -0.017 4.017 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.286 0.714 40 H 0.159 0.841 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.463 -27.694 -3.034 30.942 hybrid contribution -2.221 0.529 0.854 2.438 sum -15.684 -27.166 -2.180 31.444 Atomic orbital electron populations 1.21938 0.77737 1.04563 1.01997 1.47388 1.07636 1.04039 1.73234 1.20026 0.87239 0.85040 0.74888 1.90684 1.15198 1.87299 1.49965 1.23390 1.02872 0.95172 1.06299 1.85505 1.12315 0.97043 1.97006 1.23220 0.94628 0.92709 1.58701 0.90064 1.26101 0.97576 1.01642 0.93804 1.70177 1.13999 1.22416 1.48075 0.84925 0.78215 0.76860 0.78078 1.18128 1.20082 1.19780 1.22423 0.98557 0.82500 0.97160 1.23596 0.87991 0.95074 0.96723 1.49714 1.15978 1.59840 1.12552 1.20184 0.80504 0.75703 0.89622 1.90731 1.74971 1.57376 1.23368 1.19935 0.88108 1.03983 0.96002 1.23667 0.95575 0.87953 0.98091 1.70355 1.02136 1.35458 1.22438 1.26997 1.00914 0.80666 0.93822 1.48028 1.10336 1.12448 1.48647 0.69357 1.77842 0.98023 1.20265 1.20892 1.23771 0.94379 0.95155 0.88416 0.93739 0.89850 0.88773 0.87018 0.88208 0.91992 0.85261 0.92701 0.86105 0.83816 0.83853 0.71412 0.84128 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 9.35 127.77 1.19 2.81 16 2 N -0.59 -14.70 3.12 -821.37 -2.56 -17.26 16 3 C 0.54 19.33 7.69 87.66 0.67 20.01 16 4 O -0.55 -24.17 15.37 -3.03 -0.05 -24.22 16 5 C -0.13 -4.99 4.71 71.23 0.34 -4.65 16 6 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 7 C -0.54 -30.99 9.50 67.95 0.65 -30.35 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 C 0.01 0.77 5.49 84.86 0.47 1.24 16 10 N -0.91 -55.62 13.22 21.65 0.29 -55.34 16 11 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 C 0.10 1.82 4.67 45.55 0.21 2.04 16 16 C 0.09 1.67 8.24 83.18 0.69 2.36 16 17 N -0.65 -10.77 2.41 -857.71 -2.07 -12.84 16 18 C 0.55 11.87 7.66 87.66 0.67 12.55 16 19 O -0.58 -19.03 16.81 -3.03 -0.05 -19.08 16 20 C -0.04 -0.58 6.16 29.10 0.18 -0.40 16 21 C 0.23 4.82 6.63 138.64 0.92 5.74 16 22 N -0.57 -11.74 11.19 -191.81 -2.15 -13.88 16 23 C 0.27 3.20 13.13 180.36 2.37 5.57 16 24 N -0.47 -5.81 7.45 -60.49 -0.45 -6.26 16 25 H 0.46 1.88 8.96 -213.09 -1.91 -0.03 16 26 N -0.34 -7.05 12.80 -51.34 -0.66 -7.70 16 27 C 0.10 1.00 7.45 83.27 0.62 1.63 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.61 6.44 -2.38 -0.02 1.60 16 30 H 0.09 1.39 5.39 -2.38 -0.01 1.38 16 31 H 0.11 3.93 7.40 -2.40 -0.02 3.91 16 32 H 0.10 3.74 8.11 -2.39 -0.02 3.72 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.13 2.56 7.29 -2.39 -0.02 2.55 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.27 -0.01 8.06 -2.91 -0.02 -0.04 16 40 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 0.68 7.29 -2.39 -0.02 0.66 16 Total: -1.00 -94.88 368.41 1.32 -93.56 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -0.82 Total: 8.07 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 8.97 Total: 18.52 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -7.60 Total: -113.29 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.10 Total: -43.30 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -94.88 1.32 -93.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689640349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.158 kcal (2) G-P(sol) polarization free energy of solvation -94.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds