Wall clock time and date at job start Sat Apr 11 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47361 * 89.99587 * 11 9 7 13 13 H 1.48497 * 109.47059 * 210.00081 * 11 9 7 14 14 H 1.48507 * 109.47001 * 329.99878 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.89172 * 179.29907 * 15 2 1 17 17 C 1.55158 * 111.00375 * 303.17927 * 15 2 1 18 18 C 1.54324 * 102.94501 * 153.57318 * 17 15 2 19 19 N 1.47020 * 107.26986 * 337.81011 * 18 17 15 20 20 C 1.34781 * 125.64521 * 178.97477 * 19 18 17 21 21 O 1.21624 * 119.99531 * 179.97438 * 20 19 18 22 22 C 1.47223 * 120.00235 * 359.97438 * 20 19 18 23 23 C 1.37005 * 127.19217 * 179.68653 * 22 20 19 24 24 N 1.33315 * 106.37480 * 179.84206 * 23 22 20 25 25 N 1.28508 * 109.44008 * 0.43078 * 24 23 22 26 26 N 1.28715 * 110.63643 * 359.72259 * 25 24 23 27 27 H 0.97006 * 126.03336 * 179.97438 * 26 25 24 28 28 C 1.47468 * 108.72396 * 358.96881 * 19 18 17 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 35 35 H 1.09004 * 110.72197 * 271.93962 * 17 15 2 36 36 H 1.09005 * 110.71826 * 35.03156 * 17 15 2 37 37 H 1.09000 * 109.87903 * 97.22632 * 18 17 15 38 38 H 1.08992 * 109.88180 * 218.39069 * 18 17 15 39 39 H 1.08001 * 126.81187 * 359.97438 * 23 22 20 40 40 H 1.08990 * 110.35220 * 265.25582 * 28 19 18 41 41 H 1.09002 * 110.40367 * 142.91361 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 0.4263 8.3317 1.4038 13 1 1.3618 9.1031 -0.6963 14 1 -0.5102 7.5616 -0.6963 15 6 2.1975 -1.2687 -0.0006 16 1 3.2737 -1.0961 -0.0129 17 6 1.7891 -2.1472 1.2114 18 6 2.0704 -3.5795 0.7105 19 7 2.0612 -3.5377 -0.7591 20 6 2.2867 -4.5856 -1.5761 21 8 2.2534 -4.4343 -2.7824 22 6 2.5733 -5.9134 -1.0084 23 6 2.8169 -7.0731 -1.6960 24 7 3.0272 -8.0170 -0.7783 25 7 2.9174 -7.5048 0.3951 26 7 2.6465 -6.2488 0.3183 27 1 2.5165 -5.6462 1.0673 28 6 1.7642 -2.1595 -1.1916 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.5667 7.6331 0.0031 35 1 2.4041 -1.9149 2.0808 36 1 0.7318 -2.0174 1.4429 37 1 3.0460 -3.9115 1.0658 38 1 1.2939 -4.2561 1.0670 39 1 2.8369 -7.1974 -2.7686 40 1 0.6975 -2.0439 -1.3834 41 1 2.3401 -1.9083 -2.0823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703466274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:47 Heat of formation + Delta-G solvation = 50.323281 kcal Electronic energy + Delta-G solvation = -26235.225121 eV Core-core repulsion = 22279.710044 eV Total energy + Delta-G solvation = -3955.515077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.90901 -40.83186 -39.54104 -37.87909 -35.37865 -34.09180 -32.49682 -32.27488 -31.44027 -30.04088 -28.52844 -27.09323 -25.66273 -25.43917 -23.55983 -23.19603 -21.86817 -21.21760 -19.47433 -18.70568 -17.92316 -17.46038 -17.42933 -16.90964 -16.40675 -16.18726 -15.57232 -15.40176 -14.87514 -14.86601 -14.73934 -14.21949 -13.98216 -13.66987 -13.46692 -13.39380 -13.08570 -12.70411 -12.69577 -12.50148 -12.38402 -12.20670 -11.81871 -11.76650 -11.35792 -11.23659 -11.12285 -11.08947 -10.83243 -10.78880 -10.08720 -9.88657 -9.58884 -9.43907 -9.13192 -8.80079 -8.32237 -6.58821 -6.28391 -3.99943 0.33190 1.76848 1.80091 2.09756 2.48994 2.75711 2.80570 3.17372 3.19146 3.25261 3.45564 3.52469 3.82370 3.91444 4.13179 4.16051 4.23111 4.39859 4.46657 4.55500 4.63919 4.72689 4.82436 4.90672 5.06966 5.16594 5.20921 5.24766 5.37144 5.42669 5.46941 5.49271 5.56715 5.69966 5.77499 5.99574 6.01131 6.35671 6.64379 7.25450 7.32621 7.52854 7.72603 8.28113 8.32347 9.17039 10.78964 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.001914 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.763864 B =14624.578386 C =14656.711667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.537 3.463 4 O -0.511 6.511 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.133 3.867 16 H 0.121 0.879 17 C -0.142 4.142 18 C 0.083 3.917 19 N -0.613 5.613 20 C 0.612 3.388 21 O -0.506 6.506 22 C -0.063 4.063 23 C 0.036 3.964 24 N -0.268 5.268 25 N -0.047 5.047 26 N -0.378 5.378 27 H 0.450 0.550 28 C 0.099 3.901 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.206 0.794 40 H 0.081 0.919 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -23.861 2.732 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.351 5.351 3 C 0.326 3.674 4 O -0.384 6.384 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.685 4.685 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.027 3.973 16 H 0.139 0.861 17 C -0.181 4.181 18 C -0.041 4.041 19 N -0.348 5.348 20 C 0.398 3.602 21 O -0.379 6.379 22 C -0.197 4.197 23 C -0.123 4.123 24 N -0.133 5.133 25 N -0.029 5.029 26 N -0.110 5.110 27 H 0.301 0.699 28 C -0.024 4.024 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.223 0.777 40 H 0.099 0.901 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.698 -24.931 2.835 25.528 hybrid contribution -2.567 2.174 -0.077 3.365 sum -7.265 -22.756 2.758 24.047 Atomic orbital electron populations 1.21837 0.79403 1.03441 1.02228 1.47689 1.06828 1.04626 1.75936 1.20444 0.87956 0.84436 0.74609 1.90709 1.13746 1.86605 1.47333 1.23563 1.04650 0.96899 1.04928 1.85429 1.07902 0.93344 1.96733 1.22841 0.94263 0.92132 1.59220 0.90887 1.24997 0.95696 0.98415 0.94457 1.70011 1.11754 1.21759 1.46645 0.86162 0.80248 0.80695 0.78364 1.20257 1.20712 1.19670 1.22048 0.99474 0.83105 0.92674 0.86073 1.23038 1.04029 0.91564 0.99420 1.22314 1.01317 0.99982 0.80469 1.48224 1.70404 1.09542 1.06666 1.16324 0.77420 0.80857 0.85619 1.90916 1.51004 1.83115 1.12840 1.22274 1.15031 0.98029 0.84412 1.23968 0.99634 0.86827 1.01886 1.75028 1.17112 1.26654 0.94533 1.78235 1.14848 0.90712 1.19102 1.46224 1.46656 1.09839 1.08281 0.69886 1.22674 1.02064 0.78776 0.98933 0.92314 0.91202 0.90055 0.89022 0.89051 0.92116 0.88478 0.89118 0.90730 0.90740 0.77677 0.90102 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.99 59.84 0.54 1.11 16 2 N -0.61 -6.92 2.91 -171.48 -0.50 -7.42 16 3 C 0.54 8.99 7.69 -10.98 -0.08 8.91 16 4 O -0.51 -10.57 15.24 5.56 0.08 -10.49 16 5 C -0.15 -2.77 4.71 36.01 0.17 -2.60 16 6 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16 8 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 9 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 10 N -0.87 -25.49 13.22 55.49 0.73 -24.75 16 11 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 C 0.13 1.22 3.45 -65.78 -0.23 0.99 16 16 H 0.12 1.41 7.01 -51.93 -0.36 1.04 16 17 C -0.14 -0.76 6.51 -24.90 -0.16 -0.92 16 18 C 0.08 0.34 5.13 -3.07 -0.02 0.33 16 19 N -0.61 -4.58 3.33 -171.83 -0.57 -5.15 16 20 C 0.61 5.73 7.84 -12.61 -0.10 5.63 16 21 O -0.51 -6.46 17.18 5.26 0.09 -6.37 16 22 C -0.06 -0.51 6.98 -82.34 -0.57 -1.08 16 23 C 0.04 0.31 11.87 -17.35 -0.21 0.10 16 24 N -0.27 -2.69 12.35 30.47 0.38 -2.31 16 25 N -0.05 -0.42 13.35 60.35 0.81 0.39 16 26 N -0.38 -2.40 6.60 33.31 0.22 -2.18 16 27 H 0.45 1.39 5.14 -190.32 -0.98 0.42 16 28 C 0.10 0.85 6.49 -2.50 -0.02 0.83 16 29 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.07 0.35 6.21 -51.93 -0.32 0.03 16 31 H 0.08 0.66 6.44 -51.93 -0.33 0.32 16 32 H 0.09 1.58 8.11 -51.92 -0.42 1.15 16 33 H 0.09 1.53 7.40 -51.91 -0.38 1.15 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.39 6.20 -51.93 -0.32 0.06 16 37 H 0.07 0.21 7.14 -51.93 -0.37 -0.16 16 38 H 0.07 0.14 7.28 -51.93 -0.38 -0.23 16 39 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.08 0.62 7.10 -51.93 -0.37 0.26 16 41 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -36.66 356.73 -6.57 -43.23 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.47 Total: -3.14 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.48 Total: 0.84 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 1.06 Total: -41.43 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.17 Total: -16.86 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.66 -6.57 -43.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703466274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.549 kcal (2) G-P(sol) polarization free energy of solvation -36.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds