Wall clock time and date at job start Sat Apr 11 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47361 * 89.99587 * 11 9 7 13 13 H 1.48497 * 109.47059 * 210.00081 * 11 9 7 14 14 H 1.48507 * 109.47001 * 329.99878 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.89172 * 179.29907 * 15 2 1 17 17 C 1.55158 * 111.00375 * 303.17927 * 15 2 1 18 18 C 1.54324 * 102.94501 * 153.57318 * 17 15 2 19 19 N 1.47020 * 107.26986 * 337.81011 * 18 17 15 20 20 C 1.34781 * 125.64521 * 178.97477 * 19 18 17 21 21 O 1.21624 * 119.99531 * 179.97438 * 20 19 18 22 22 C 1.47223 * 120.00235 * 359.97438 * 20 19 18 23 23 C 1.37005 * 127.19217 * 179.68653 * 22 20 19 24 24 N 1.33315 * 106.37480 * 179.84206 * 23 22 20 25 25 N 1.28508 * 109.44008 * 0.43078 * 24 23 22 26 26 N 1.28715 * 110.63643 * 359.72259 * 25 24 23 27 27 H 0.97006 * 126.03336 * 179.97438 * 26 25 24 28 28 C 1.47468 * 108.72396 * 358.96881 * 19 18 17 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 35 35 H 1.09004 * 110.72197 * 271.93962 * 17 15 2 36 36 H 1.09005 * 110.71826 * 35.03156 * 17 15 2 37 37 H 1.09000 * 109.87903 * 97.22632 * 18 17 15 38 38 H 1.08992 * 109.88180 * 218.39069 * 18 17 15 39 39 H 1.08001 * 126.81187 * 359.97438 * 23 22 20 40 40 H 1.08990 * 110.35220 * 265.25582 * 28 19 18 41 41 H 1.09002 * 110.40367 * 142.91361 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 0.4263 8.3317 1.4038 13 1 1.3618 9.1031 -0.6963 14 1 -0.5102 7.5616 -0.6963 15 6 2.1975 -1.2687 -0.0006 16 1 3.2737 -1.0961 -0.0129 17 6 1.7891 -2.1472 1.2114 18 6 2.0704 -3.5795 0.7105 19 7 2.0612 -3.5377 -0.7591 20 6 2.2867 -4.5856 -1.5761 21 8 2.2534 -4.4343 -2.7824 22 6 2.5733 -5.9134 -1.0084 23 6 2.8169 -7.0731 -1.6960 24 7 3.0272 -8.0170 -0.7783 25 7 2.9174 -7.5048 0.3951 26 7 2.6465 -6.2488 0.3183 27 1 2.5165 -5.6462 1.0673 28 6 1.7642 -2.1595 -1.1916 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.5667 7.6331 0.0031 35 1 2.4041 -1.9149 2.0808 36 1 0.7318 -2.0174 1.4429 37 1 3.0460 -3.9115 1.0658 38 1 1.2939 -4.2561 1.0670 39 1 2.8369 -7.1974 -2.7686 40 1 0.6975 -2.0439 -1.3834 41 1 2.3401 -1.9083 -2.0823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703466274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:46 Heat of formation + Delta-G solvation = 22.091155 kcal Electronic energy + Delta-G solvation = -26236.449358 eV Core-core repulsion = 22279.710044 eV Total energy + Delta-G solvation = -3956.739314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.54429 -41.61961 -40.58090 -38.75040 -36.35762 -34.76922 -34.58181 -33.02291 -32.16228 -30.93019 -29.54247 -27.88020 -27.65823 -26.22452 -24.24851 -23.78135 -22.65200 -21.90455 -20.53360 -19.63103 -19.33288 -18.51961 -18.13751 -17.67341 -17.21673 -17.09221 -16.87483 -16.69715 -16.45200 -15.79742 -15.48860 -15.25623 -14.82842 -14.58032 -14.51909 -14.32600 -14.24590 -13.85422 -13.53510 -13.36753 -13.21409 -13.13486 -12.97659 -12.89269 -12.60892 -12.58648 -12.41551 -11.95884 -11.81690 -11.72283 -11.56829 -11.14008 -10.95249 -10.76082 -10.25927 -10.09616 -9.71797 -8.66911 -8.34593 -6.12510 -0.31195 1.08819 1.12737 1.27711 1.42667 1.43088 1.51523 1.53677 1.63612 1.80963 2.11649 2.27644 2.94102 2.99942 3.20898 3.29134 3.33810 3.58880 3.69618 3.81102 3.84809 3.93996 4.00600 4.04856 4.20105 4.26010 4.31826 4.48626 4.55646 4.64919 4.68488 4.75498 4.86759 4.88946 4.96836 5.07667 5.42313 5.49767 5.53957 6.01094 6.17665 6.20446 6.62462 7.07048 7.07955 7.08670 8.74418 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.001914 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.763864 B =14624.578386 C =14656.711667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.598 5.598 3 C 0.536 3.464 4 O -0.563 6.563 5 C -0.123 4.123 6 S -0.155 6.155 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.997 3.003 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.257 1.257 15 C 0.126 3.874 16 H 0.091 0.909 17 C -0.128 4.128 18 C 0.076 3.924 19 N -0.608 5.608 20 C 0.614 3.386 21 O -0.548 6.548 22 C -0.061 4.061 23 C 0.032 3.968 24 N -0.294 5.294 25 N -0.056 5.056 26 N -0.354 5.354 27 H 0.464 0.536 28 C 0.104 3.896 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.270 0.730 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.219 0.781 40 H 0.098 0.902 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 -25.040 4.057 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.332 5.332 3 C 0.324 3.676 4 O -0.441 6.441 5 C -0.274 4.274 6 S 0.072 5.928 7 C -0.692 4.692 8 H 0.103 0.897 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.819 3.181 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.181 1.181 15 C 0.021 3.979 16 H 0.109 0.891 17 C -0.167 4.167 18 C -0.046 4.046 19 N -0.342 5.342 20 C 0.401 3.599 21 O -0.424 6.424 22 C -0.196 4.196 23 C -0.128 4.128 24 N -0.158 5.158 25 N -0.038 5.038 26 N -0.089 5.089 27 H 0.319 0.681 28 C -0.019 4.019 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.781 -26.157 4.219 27.614 hybrid contribution -1.660 2.420 -0.474 2.973 sum -9.441 -23.737 3.744 25.819 Atomic orbital electron populations 1.22199 0.76621 1.05455 1.03633 1.47574 1.08392 1.03616 1.73569 1.20156 0.87220 0.85424 0.74835 1.90696 1.15774 1.87357 1.50236 1.23379 1.02696 0.94661 1.06676 1.85618 1.12708 0.97455 1.97044 1.23192 0.94668 0.92569 1.58732 0.89743 1.26121 0.97537 1.01736 0.93817 1.70183 1.14113 1.22432 1.48056 0.84968 0.77951 0.76371 0.78796 1.19263 1.20565 1.18101 1.22107 0.97832 0.82627 0.95384 0.89125 1.23018 1.05458 0.90712 0.97485 1.22628 1.03702 1.00137 0.78127 1.48209 1.69333 1.08529 1.08138 1.16396 0.76947 0.81394 0.85185 1.90899 1.53058 1.83785 1.14646 1.22021 1.15411 0.97232 0.84947 1.24286 0.99119 0.86778 1.02593 1.75027 1.18263 1.27519 0.95028 1.78183 1.15194 0.91527 1.18907 1.46168 1.45146 1.09345 1.08214 0.68126 1.22523 1.02498 0.79340 0.97563 0.91211 0.87374 0.89981 0.87435 0.86833 0.92059 0.87846 0.86840 0.89079 0.87182 0.76424 0.88374 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 8.99 127.77 1.15 1.88 16 2 N -0.60 -12.38 2.91 -814.84 -2.37 -14.75 16 3 C 0.54 17.87 7.69 87.66 0.67 18.55 16 4 O -0.56 -24.27 15.24 -3.03 -0.05 -24.32 16 5 C -0.12 -4.48 4.71 71.24 0.34 -4.15 16 6 S -0.16 -8.32 20.57 -56.49 -1.16 -9.48 16 7 C -0.54 -30.00 9.50 67.96 0.65 -29.35 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 C 0.01 0.70 5.49 84.86 0.47 1.17 16 10 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 11 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 13 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 15 C 0.13 2.13 3.45 46.39 0.16 2.29 16 16 H 0.09 2.16 7.01 -2.38 -0.02 2.14 16 17 C -0.13 -0.89 6.51 31.78 0.21 -0.68 16 18 C 0.08 0.34 5.13 86.73 0.45 0.78 16 19 N -0.61 -7.74 3.33 -815.80 -2.71 -10.46 16 20 C 0.61 10.68 7.84 86.60 0.68 11.35 16 21 O -0.55 -13.91 17.18 -4.11 -0.07 -13.98 16 22 C -0.06 -0.87 6.98 40.40 0.28 -0.59 16 23 C 0.03 0.51 11.87 84.18 1.00 1.51 16 24 N -0.29 -5.56 12.35 -57.50 -0.71 -6.27 16 25 N -0.06 -0.90 13.35 37.02 0.49 -0.40 16 26 N -0.35 -3.56 6.60 -48.53 -0.32 -3.88 16 27 H 0.46 1.18 5.14 -219.89 -1.13 0.05 16 28 C 0.10 1.64 6.49 86.85 0.56 2.20 16 29 H 0.07 0.74 8.08 -2.39 -0.02 0.73 16 30 H 0.11 0.50 6.21 -2.38 -0.01 0.49 16 31 H 0.08 1.02 6.44 -2.39 -0.02 1.01 16 32 H 0.11 3.56 8.11 -2.39 -0.02 3.54 16 33 H 0.11 3.61 7.40 -2.40 -0.02 3.60 16 34 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 35 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.11 0.33 6.20 -2.38 -0.01 0.31 16 37 H 0.09 0.17 7.14 -2.39 -0.02 0.15 16 38 H 0.11 -0.18 7.28 -2.39 -0.02 -0.20 16 39 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.10 1.23 7.10 -2.39 -0.02 1.22 16 41 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 Total: -1.00 -85.17 356.73 1.98 -83.19 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -0.03 Total: 5.67 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.61 Total: 4.97 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -5.33 Total: -90.49 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.12 Total: -38.30 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -85.17 1.98 -83.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703466274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.280 kcal (2) G-P(sol) polarization free energy of solvation -85.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds