Wall clock time and date at job start Sat Apr 11 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34583 * 125.75078 * 2 1 4 4 N 1.30873 * 107.62293 * 179.97438 * 3 2 1 5 5 C 1.34543 * 107.27104 * 0.02562 * 4 3 2 6 6 C 1.47875 * 126.04748 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99953 * 180.02562 * 6 5 4 8 8 N 1.34772 * 119.99857 * 0.03114 * 6 5 4 9 9 C 1.46503 * 119.99877 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.47017 * 179.97438 * 9 8 6 11 11 C 1.30999 * 119.99403 * 127.00263 * 10 9 8 12 12 C 1.50693 * 120.00654 * 7.56227 * 11 10 9 13 13 N 1.46498 * 109.47618 * 127.15614 * 12 11 10 14 14 C 1.34771 * 120.00429 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00016 * 359.72470 * 14 13 12 16 16 C 1.50698 * 120.00474 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47300 * 180.02562 * 16 14 13 18 18 C 1.76209 * 99.99979 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99615 * 359.97438 * 18 17 16 20 20 C 1.38793 * 120.00170 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00190 * 180.02562 * 20 18 17 22 22 Si 1.86809 * 120.00053 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47178 * 89.99787 * 22 20 18 24 24 H 1.48499 * 109.47070 * 210.00332 * 22 20 18 25 25 H 1.48504 * 109.46675 * 329.99824 * 22 20 18 26 26 N 1.28853 * 125.74556 * 180.31962 * 2 1 3 27 27 H 1.08997 * 109.46957 * 89.99501 * 1 2 3 28 28 H 1.09002 * 109.47228 * 210.00112 * 1 2 3 29 29 H 1.09005 * 109.47126 * 329.99898 * 1 2 3 30 30 H 1.08000 * 126.18559 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00329 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47415 * 59.99549 * 9 8 6 33 33 H 1.08996 * 109.46892 * 299.99217 * 9 8 6 34 34 H 1.07991 * 120.00090 * 307.00306 * 10 9 8 35 35 H 1.08005 * 119.99209 * 187.55778 * 11 10 9 36 36 H 1.09003 * 109.47209 * 7.15149 * 12 11 10 37 37 H 1.09003 * 109.46934 * 247.15273 * 12 11 10 38 38 H 0.97003 * 119.99666 * 359.97438 * 13 12 11 39 39 H 1.08996 * 109.47398 * 300.00588 * 16 14 13 40 40 H 1.09003 * 109.46684 * 59.99985 * 16 14 13 41 41 H 0.96996 * 120.00225 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6850 0.0006 5 6 3.4750 -0.6602 0.0003 6 6 4.6574 -1.5482 0.0002 7 8 4.5113 -2.7549 -0.0004 8 7 5.8971 -1.0195 0.0010 9 6 7.0686 -1.8992 0.0004 10 6 8.3235 -1.0646 0.0009 11 6 9.2470 -1.2712 0.9067 12 6 9.1369 -2.4490 1.8403 13 7 10.3783 -3.2254 1.7955 14 6 10.5094 -4.3311 2.5549 15 8 9.6014 -4.6806 3.2791 16 6 11.7862 -5.1302 2.5084 17 16 11.6539 -6.5447 3.6298 18 6 13.2362 -7.2798 3.3831 19 1 13.9384 -6.8319 2.6956 20 6 13.5797 -8.4351 4.0714 21 7 14.7619 -8.9840 3.8875 22 14 12.3642 -9.2111 5.2589 23 1 11.5197 -10.1926 4.5319 24 1 13.1052 -9.9032 6.3438 25 1 11.5014 -8.1541 5.8451 26 7 2.2177 -1.0458 -0.0058 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9164 2.1190 -0.0004 31 1 6.0137 -0.0566 0.0013 32 1 7.0508 -2.5274 -0.8902 33 1 7.0505 -2.5290 0.8898 34 1 8.4614 -0.2964 -0.7455 35 1 10.0874 -0.5972 0.9844 36 1 8.3026 -3.0795 1.5328 37 1 8.9677 -2.0925 2.8564 38 1 11.1061 -2.9437 1.2194 39 1 11.9549 -5.4870 1.4924 40 1 12.6208 -4.4996 2.8152 41 1 15.0018 -9.7915 4.3682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704975409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:54 Heat of formation + Delta-G solvation = 16.176164 kcal Electronic energy + Delta-G solvation = -24564.734094 eV Core-core repulsion = 20607.738287 eV Total energy + Delta-G solvation = -3956.995807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.47139 -40.83858 -40.56531 -37.80715 -35.89964 -35.49188 -34.67167 -33.86755 -32.82116 -31.16443 -29.31291 -27.93229 -27.61447 -26.20036 -24.67488 -23.12171 -21.92228 -21.71365 -20.46846 -19.81385 -18.92554 -18.00648 -17.80083 -17.79181 -17.39377 -17.13294 -16.89812 -16.76230 -16.38903 -15.95154 -15.67614 -15.43539 -15.00858 -14.93848 -14.75671 -14.39633 -14.24158 -13.99069 -13.92073 -13.55272 -13.34860 -13.20018 -13.01310 -12.88473 -12.64934 -11.97158 -11.85873 -11.65996 -11.56758 -11.46967 -11.17355 -11.12870 -10.69383 -10.53404 -10.48795 -10.32659 -9.85278 -8.99770 -8.51609 -6.22319 0.24936 0.74719 1.02252 1.08445 1.31175 1.34170 1.47640 1.55557 1.58333 2.10462 2.18141 2.24625 2.39312 2.74323 2.86745 3.07851 3.48411 3.61375 3.86808 3.89478 3.97674 4.09095 4.24361 4.33453 4.38686 4.40192 4.47832 4.62587 4.68807 4.68936 4.81572 4.93335 5.15467 5.27721 5.33711 5.47546 5.63205 5.70282 5.70976 6.11514 6.26868 6.47748 6.88713 6.93929 7.04875 7.19511 8.60695 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.001590 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.668703 B =17602.786680 C =18512.708091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.208 3.792 4 N -0.505 5.505 5 C 0.115 3.885 6 C 0.608 3.392 7 O -0.565 6.565 8 N -0.686 5.686 9 C 0.129 3.871 10 C -0.141 4.141 11 C -0.137 4.137 12 C 0.129 3.871 13 N -0.705 5.705 14 C 0.532 3.468 15 O -0.566 6.566 16 C -0.110 4.110 17 S -0.181 6.181 18 C -0.528 4.528 19 H 0.064 0.936 20 C 0.048 3.952 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.258 1.258 25 H -0.238 1.238 26 N -0.290 5.290 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.283 0.717 31 H 0.423 0.577 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.420 0.580 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.192 31.644 -12.600 43.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.096 5.096 3 C -0.086 4.086 4 N -0.231 5.231 5 C -0.163 4.163 6 C 0.390 3.610 7 O -0.442 6.442 8 N -0.339 5.339 9 C 0.007 3.993 10 C -0.160 4.160 11 C -0.156 4.156 12 C 0.006 3.994 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.260 4.260 17 S 0.045 5.955 18 C -0.675 4.675 19 H 0.083 0.917 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.189 1.189 24 H -0.182 1.182 25 H -0.162 1.162 26 N -0.132 5.132 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.164 0.836 30 H 0.298 0.702 31 H 0.261 0.739 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.258 0.742 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.569 29.599 -11.382 42.683 hybrid contribution 1.173 0.073 -0.587 1.314 sum -27.396 29.672 -11.969 42.121 Atomic orbital electron populations 1.22778 0.69113 1.07901 1.06749 1.47813 1.10951 1.03022 1.47770 1.27553 0.84529 0.97617 0.98905 1.71196 1.22860 1.07808 1.21227 1.23446 0.91868 0.90480 1.10556 1.16618 0.82270 0.85513 0.76551 1.90838 1.86384 1.15658 1.51279 1.45463 1.03425 1.11839 1.73195 1.20671 0.83069 0.92724 1.02839 1.22910 0.93389 1.01062 0.98685 1.22950 1.01795 0.96618 0.94242 1.20610 0.86572 0.91999 1.00254 1.45639 1.19165 1.25819 1.45310 1.20039 0.87829 0.81041 0.79333 1.90705 1.42711 1.69852 1.41213 1.23263 0.99217 0.98949 1.04612 1.84791 1.22521 1.30374 1.57794 1.22458 1.00196 1.14255 1.30636 0.91748 1.25522 0.96664 0.96099 0.97493 1.70010 1.21300 1.21247 1.42840 0.85897 0.79970 0.80664 0.80025 1.18866 1.18180 1.16235 1.74289 1.03358 1.15959 1.19555 0.87406 0.88830 0.83630 0.70173 0.73885 0.90628 0.91492 0.82355 0.82543 0.91735 0.91426 0.74236 0.86701 0.86386 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.07 11.38 127.77 1.45 1.38 16 2 N -0.30 -3.10 3.72 -373.46 -1.39 -4.49 16 3 C 0.21 1.47 12.62 180.30 2.27 3.75 16 4 N -0.50 -8.01 11.09 -193.03 -2.14 -10.15 16 5 C 0.12 2.65 7.96 137.13 1.09 3.74 16 6 C 0.61 16.10 7.83 86.80 0.68 16.78 16 7 O -0.57 -20.04 17.09 -3.88 -0.07 -20.11 16 8 N -0.69 -12.82 5.55 -469.67 -2.60 -15.43 16 9 C 0.13 2.36 5.76 85.63 0.49 2.85 16 10 C -0.14 -1.52 9.63 25.65 0.25 -1.28 16 11 C -0.14 -1.61 9.63 25.65 0.25 -1.36 16 12 C 0.13 2.73 5.76 85.63 0.49 3.22 16 13 N -0.71 -16.64 5.55 -466.80 -2.59 -19.22 16 14 C 0.53 18.82 7.85 87.66 0.69 19.51 16 15 O -0.57 -25.43 15.86 -3.05 -0.05 -25.48 16 16 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 17 S -0.18 -9.40 18.55 -56.49 -1.05 -10.45 16 18 C -0.53 -31.18 10.04 67.95 0.68 -30.49 16 19 H 0.06 3.98 8.03 -2.91 -0.02 3.96 16 20 C 0.05 2.84 5.50 84.86 0.47 3.31 16 21 N -0.92 -56.37 13.97 21.65 0.30 -56.06 16 22 Si 0.91 46.02 27.74 68.60 1.90 47.92 16 23 H -0.26 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.24 -12.07 6.74 99.48 0.67 -11.40 16 26 N -0.29 -6.42 12.08 -52.44 -0.63 -7.05 16 27 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.15 -1.37 8.14 -2.38 -0.02 -1.39 16 30 H 0.28 -1.71 8.06 -2.91 -0.02 -1.74 16 31 H 0.42 5.67 8.17 -92.71 -0.76 4.91 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.56 5.30 -2.39 -0.01 1.55 16 34 H 0.16 0.79 8.06 -2.92 -0.02 0.76 16 35 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.06 1.64 5.30 -2.39 -0.01 1.63 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.42 6.74 8.46 -92.71 -0.78 5.96 16 39 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 40 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 41 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -96.15 376.98 0.46 -95.69 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.48 Total: 7.15 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 9.25 Total: 17.67 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -9.06 Total: -112.40 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.11 Total: -45.58 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.05 Total: -10.45 kcal Total: -96.15 0.46 -95.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.869 kcal (2) G-P(sol) polarization free energy of solvation -96.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds