Wall clock time and date at job start Sat Apr 11 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34583 * 125.74323 * 2 1 4 4 N 1.30878 * 107.62192 * 180.02562 * 3 2 1 5 5 C 1.34546 * 107.26719 * 0.02562 * 4 3 2 6 6 C 1.47871 * 126.04332 * 180.02562 * 5 4 3 7 7 O 1.21562 * 119.99626 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00501 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00215 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.34779 * 119.99594 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00077 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47195 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00063 * 180.02562 * 17 16 14 19 19 H 1.08010 * 119.99901 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00310 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00007 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00088 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47195 * 89.99908 * 22 20 18 24 24 H 1.48506 * 109.46915 * 210.00008 * 22 20 18 25 25 H 1.48495 * 109.46945 * 329.99484 * 22 20 18 26 26 N 1.28851 * 125.74978 * 180.32149 * 2 1 3 27 27 H 1.09008 * 109.47260 * 90.00417 * 1 2 3 28 28 H 1.09001 * 109.46840 * 209.99790 * 1 2 3 29 29 H 1.08994 * 109.47364 * 329.99692 * 1 2 3 30 30 H 1.07998 * 126.19160 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99865 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 33 33 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 34 34 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 35 35 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 36 36 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 37 37 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 38 38 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 39 39 H 1.08998 * 109.47363 * 300.00761 * 16 14 13 40 40 H 1.09004 * 109.46632 * 60.00255 * 16 14 13 41 41 H 0.97003 * 120.00310 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4950 0.6853 -0.0006 5 6 3.4750 -0.6600 -0.0015 6 6 4.6575 -1.5478 -0.0018 7 8 4.5115 -2.7547 -0.0031 8 7 5.8972 -1.0191 -0.0007 9 6 7.0688 -1.8988 -0.0016 10 6 8.3235 -1.0641 0.0007 11 6 9.2312 -1.2485 0.9270 12 6 10.4889 -0.4183 0.9257 13 7 10.6396 0.2418 2.2248 14 6 11.6994 1.0420 2.4551 15 8 12.5281 1.2160 1.5867 16 6 11.8548 1.7207 3.7917 17 16 13.3645 2.7191 3.7894 18 6 13.2982 3.3777 5.4224 19 1 12.4792 3.1175 6.0768 20 6 14.2978 4.2316 5.8674 21 7 15.2956 4.5490 5.0698 22 14 14.2271 4.9303 7.5984 23 1 14.9361 4.0170 8.5302 24 1 14.8794 6.2643 7.6207 25 1 12.8097 5.0653 8.0202 26 7 2.2178 -1.0457 -0.0059 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.9163 2.1191 -0.0004 31 1 6.0138 -0.0562 0.0008 32 1 7.0511 -2.5265 -0.8924 33 1 7.0505 -2.5291 0.8875 34 1 8.4765 -0.3170 -0.7641 35 1 9.0783 -1.9957 1.6918 36 1 11.3492 -1.0622 0.7432 37 1 10.4260 0.3352 0.1404 38 1 9.9767 0.1031 2.9192 39 1 10.9943 2.3641 3.9747 40 1 11.9184 0.9670 4.5766 41 1 15.9940 5.1461 5.3807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704975410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:57 Heat of formation + Delta-G solvation = 40.059904 kcal Electronic energy + Delta-G solvation = -24209.739380 eV Core-core repulsion = 20253.779250 eV Total energy + Delta-G solvation = -3955.960130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.94760 -39.85088 -39.17078 -36.64868 -35.19269 -34.83907 -32.84809 -32.42031 -32.27301 -29.89678 -28.74344 -27.35117 -25.50208 -24.77233 -23.51734 -22.54829 -21.07294 -20.58450 -19.95629 -18.61082 -17.85674 -17.32252 -17.04382 -16.62935 -16.28611 -16.04131 -15.60614 -15.33312 -15.21676 -14.79664 -14.48562 -14.22097 -13.98513 -13.88365 -13.78864 -13.62117 -13.08730 -12.78297 -12.68763 -12.47830 -12.45980 -11.77514 -11.51414 -11.05703 -11.01655 -11.00076 -10.95427 -10.75964 -10.74168 -10.10754 -9.97488 -9.80538 -9.47633 -9.29244 -9.06255 -8.86600 -8.22764 -6.49119 -6.20880 -3.91406 0.90679 1.44175 1.58054 1.71792 2.74678 2.95926 3.09390 3.10532 3.23038 3.29215 3.34997 3.61976 3.79367 3.82683 4.19949 4.21194 4.29005 4.33333 4.51339 4.64517 4.65805 4.99042 5.11160 5.14318 5.23940 5.27491 5.43764 5.46450 5.58186 5.75863 5.78879 5.88840 5.90384 5.92320 6.15176 6.19700 6.28658 6.61208 6.98601 7.48234 7.60382 7.70532 7.76556 8.36020 8.60790 9.24475 10.86551 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.001551 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.045697 B =18049.437916 C =19545.580249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.305 5.305 3 C 0.194 3.806 4 N -0.484 5.484 5 C 0.140 3.860 6 C 0.617 3.383 7 O -0.519 6.519 8 N -0.706 5.706 9 C 0.152 3.848 10 C -0.165 4.165 11 C -0.139 4.139 12 C 0.147 3.853 13 N -0.736 5.736 14 C 0.532 3.468 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.251 5.251 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.229 0.771 31 H 0.414 0.586 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.413 -9.515 -11.260 34.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.100 5.100 3 C -0.101 4.101 4 N -0.209 5.209 5 C -0.139 4.139 6 C 0.399 3.601 7 O -0.392 6.392 8 N -0.359 5.359 9 C 0.029 3.971 10 C -0.184 4.184 11 C -0.158 4.158 12 C 0.023 3.977 13 N -0.391 5.391 14 C 0.318 3.682 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.091 5.091 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.245 0.755 31 H 0.250 0.750 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.840 -10.495 -12.756 34.107 hybrid contribution -1.640 0.972 2.415 3.077 sum -31.480 -9.522 -10.341 34.476 Atomic orbital electron populations 1.22298 0.71962 1.06198 1.05177 1.47421 1.09481 1.03826 1.49279 1.26546 0.85737 0.96080 1.01773 1.71285 1.20575 1.09226 1.19858 1.23679 0.92152 0.89555 1.08561 1.16235 0.81045 0.85781 0.77069 1.90850 1.85642 1.13516 1.49142 1.45651 1.04229 1.11581 1.74405 1.20425 0.81523 0.91832 1.03309 1.22894 0.94569 1.00846 1.00088 1.23068 0.95251 0.99052 0.98467 1.20300 0.95503 0.95256 0.86593 1.45974 1.27133 1.50085 1.15923 1.20333 0.80340 0.78044 0.89503 1.90707 1.41307 1.60993 1.46159 1.23532 1.07398 1.03295 0.96161 1.85394 1.22372 1.55902 1.19700 1.22875 1.12601 1.33697 0.99243 0.90914 1.24986 0.94533 0.95562 0.98470 1.70017 1.10761 1.33776 1.35731 0.86170 0.78380 0.78328 0.82629 1.20273 1.20754 1.19709 1.74348 1.02803 1.13380 1.18572 0.88965 0.88052 0.87749 0.75512 0.75016 0.89979 0.90435 0.85920 0.86198 0.90449 0.90971 0.76663 0.89173 0.89175 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.04 11.38 59.85 0.68 0.72 16 2 N -0.30 -1.76 3.72 -69.39 -0.26 -2.02 16 3 C 0.19 1.01 12.62 -90.48 -1.14 -0.13 16 4 N -0.48 -4.29 11.09 -12.36 -0.14 -4.43 16 5 C 0.14 1.52 7.96 -156.36 -1.24 0.28 16 6 C 0.62 7.12 7.83 -12.32 -0.10 7.02 16 7 O -0.52 -7.56 17.09 5.31 0.09 -7.47 16 8 N -0.71 -6.16 5.55 -62.42 -0.35 -6.51 16 9 C 0.15 1.16 6.11 -5.19 -0.03 1.13 16 10 C -0.16 -1.16 9.24 -36.02 -0.33 -1.49 16 11 C -0.14 -1.08 9.24 -36.02 -0.33 -1.41 16 12 C 0.15 1.61 6.11 -5.19 -0.03 1.58 16 13 N -0.74 -9.54 5.55 -61.47 -0.34 -9.88 16 14 C 0.53 9.82 7.85 -10.98 -0.09 9.74 16 15 O -0.52 -11.69 15.86 5.55 0.09 -11.60 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 N -0.25 -2.58 12.08 32.07 0.39 -2.20 16 27 H 0.09 -0.08 8.14 -51.92 -0.42 -0.50 16 28 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.10 -0.27 8.14 -51.93 -0.42 -0.70 16 30 H 0.23 0.02 8.06 -52.49 -0.42 -0.40 16 31 H 0.41 3.15 8.17 -40.82 -0.33 2.82 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 34 H 0.12 0.81 7.84 -52.49 -0.41 0.40 16 35 H 0.12 0.81 7.84 -52.49 -0.41 0.39 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 38 H 0.40 4.05 8.46 -40.82 -0.35 3.71 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -40.80 384.15 -8.66 -49.47 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.24 Total: 0.16 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.20 Total: 1.60 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.04 Total: -50.47 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.80 -8.66 -49.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.525 kcal (2) G-P(sol) polarization free energy of solvation -40.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds