Wall clock time and date at job start Sat Apr 11 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34583 * 125.74323 * 2 1 4 4 N 1.30878 * 107.62192 * 180.02562 * 3 2 1 5 5 C 1.34546 * 107.26719 * 0.02562 * 4 3 2 6 6 C 1.47871 * 126.04332 * 180.02562 * 5 4 3 7 7 O 1.21562 * 119.99626 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00501 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00215 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.34779 * 119.99594 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00077 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47195 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00063 * 180.02562 * 17 16 14 19 19 H 1.08010 * 119.99901 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00310 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00007 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00088 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47195 * 89.99908 * 22 20 18 24 24 H 1.48506 * 109.46915 * 210.00008 * 22 20 18 25 25 H 1.48495 * 109.46945 * 329.99484 * 22 20 18 26 26 N 1.28851 * 125.74978 * 180.32149 * 2 1 3 27 27 H 1.09008 * 109.47260 * 90.00417 * 1 2 3 28 28 H 1.09001 * 109.46840 * 209.99790 * 1 2 3 29 29 H 1.08994 * 109.47364 * 329.99692 * 1 2 3 30 30 H 1.07998 * 126.19160 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99865 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 33 33 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 34 34 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 35 35 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 36 36 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 37 37 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 38 38 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 39 39 H 1.08998 * 109.47363 * 300.00761 * 16 14 13 40 40 H 1.09004 * 109.46632 * 60.00255 * 16 14 13 41 41 H 0.97003 * 120.00310 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4950 0.6853 -0.0006 5 6 3.4750 -0.6600 -0.0015 6 6 4.6575 -1.5478 -0.0018 7 8 4.5115 -2.7547 -0.0031 8 7 5.8972 -1.0191 -0.0007 9 6 7.0688 -1.8988 -0.0016 10 6 8.3235 -1.0641 0.0007 11 6 9.2312 -1.2485 0.9270 12 6 10.4889 -0.4183 0.9257 13 7 10.6396 0.2418 2.2248 14 6 11.6994 1.0420 2.4551 15 8 12.5281 1.2160 1.5867 16 6 11.8548 1.7207 3.7917 17 16 13.3645 2.7191 3.7894 18 6 13.2982 3.3777 5.4224 19 1 12.4792 3.1175 6.0768 20 6 14.2978 4.2316 5.8674 21 7 15.2956 4.5490 5.0698 22 14 14.2271 4.9303 7.5984 23 1 14.9361 4.0170 8.5302 24 1 14.8794 6.2643 7.6207 25 1 12.8097 5.0653 8.0202 26 7 2.2178 -1.0457 -0.0059 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.9163 2.1191 -0.0004 31 1 6.0138 -0.0562 0.0008 32 1 7.0511 -2.5265 -0.8924 33 1 7.0505 -2.5291 0.8875 34 1 8.4765 -0.3170 -0.7641 35 1 9.0783 -1.9957 1.6918 36 1 11.3492 -1.0622 0.7432 37 1 10.4260 0.3352 0.1404 38 1 9.9767 0.1031 2.9192 39 1 10.9943 2.3641 3.9747 40 1 11.9184 0.9670 4.5766 41 1 15.9940 5.1461 5.3807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704975410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:56 Heat of formation + Delta-G solvation = 8.446093 kcal Electronic energy + Delta-G solvation = -24211.110258 eV Core-core repulsion = 20253.779250 eV Total energy + Delta-G solvation = -3957.331008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.46039 -40.69967 -40.54484 -37.50497 -35.97371 -35.52006 -34.57240 -33.81701 -32.80813 -31.21562 -29.41393 -28.08435 -27.59700 -25.53229 -24.20068 -23.02427 -21.88193 -21.73809 -20.80327 -19.78968 -19.19367 -17.87087 -17.79045 -17.57293 -17.32494 -17.15171 -16.86534 -16.63109 -16.27481 -15.89635 -15.75987 -15.28744 -15.03142 -14.75632 -14.50484 -14.39604 -13.98164 -13.95791 -13.77745 -13.36507 -13.17198 -13.15046 -12.87935 -12.87505 -12.60282 -12.20917 -11.71757 -11.64320 -11.55408 -11.46426 -11.13078 -11.08688 -10.67923 -10.52474 -10.25967 -10.18106 -9.95616 -8.65040 -8.33314 -6.11293 0.26101 0.78269 1.08406 1.29432 1.36409 1.43594 1.50156 1.60752 1.62946 2.14057 2.20247 2.28462 2.45090 3.00881 3.09764 3.34605 3.48776 3.55925 3.88520 4.00857 4.03733 4.29628 4.32706 4.35506 4.40112 4.53426 4.54701 4.54902 4.67503 4.69399 4.82260 4.86140 5.15986 5.29307 5.37632 5.43334 5.57054 5.62157 5.68727 6.21202 6.27043 6.52475 6.87595 7.05848 7.08071 7.25693 8.75898 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.001551 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.045697 B =18049.437916 C =19545.580249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.206 3.794 4 N -0.509 5.509 5 C 0.113 3.887 6 C 0.613 3.387 7 O -0.561 6.561 8 N -0.693 5.693 9 C 0.152 3.848 10 C -0.146 4.146 11 C -0.137 4.137 12 C 0.147 3.853 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 N -0.286 5.286 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.143 0.857 30 H 0.279 0.721 31 H 0.420 0.580 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.417 0.583 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.233 -8.845 -10.106 36.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.095 5.095 3 C -0.088 4.088 4 N -0.235 5.235 5 C -0.166 4.166 6 C 0.396 3.604 7 O -0.437 6.437 8 N -0.345 5.345 9 C 0.029 3.971 10 C -0.165 4.165 11 C -0.156 4.156 12 C 0.024 3.976 13 N -0.364 5.364 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.182 1.182 26 N -0.127 5.127 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.161 0.839 30 H 0.294 0.706 31 H 0.257 0.743 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -32.723 -9.832 -11.597 36.083 hybrid contribution -0.963 0.738 1.956 2.302 sum -33.686 -9.094 -9.641 36.200 Atomic orbital electron populations 1.22775 0.69092 1.07926 1.06733 1.47815 1.10944 1.03005 1.47715 1.27493 0.84622 0.97608 0.99104 1.71234 1.22862 1.08246 1.21169 1.23561 0.92113 0.90387 1.10500 1.16488 0.81978 0.85477 0.76505 1.90808 1.86338 1.15157 1.51436 1.45608 1.03795 1.11987 1.73131 1.20459 0.81284 0.91824 1.03493 1.22851 0.93721 1.00235 0.99725 1.22863 0.93904 0.99297 0.99549 1.20384 0.96920 0.95239 0.85085 1.45725 1.25475 1.47955 1.17243 1.20068 0.81112 0.78577 0.88335 1.90697 1.43444 1.63031 1.47274 1.23378 1.03756 1.02932 0.98051 1.85569 1.28008 1.58226 1.20656 1.23219 1.13103 1.33888 0.99309 0.89889 1.26116 0.93888 0.95771 1.03312 1.70182 1.11734 1.34653 1.38188 0.84957 0.79097 0.77463 0.76480 1.19360 1.20295 1.18189 1.74259 1.03210 1.15737 1.19543 0.87450 0.88508 0.83899 0.70615 0.74273 0.89874 0.90314 0.85196 0.84596 0.91135 0.91439 0.74583 0.87156 0.87162 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.11 11.38 127.77 1.45 1.34 16 2 N -0.30 -2.94 3.72 -373.45 -1.39 -4.33 16 3 C 0.21 1.63 12.62 180.30 2.27 3.90 16 4 N -0.51 -8.43 11.09 -193.03 -2.14 -10.57 16 5 C 0.11 2.46 7.96 137.13 1.09 3.55 16 6 C 0.61 14.42 7.83 86.79 0.68 15.10 16 7 O -0.56 -16.98 17.09 -3.91 -0.07 -17.05 16 8 N -0.69 -11.73 5.55 -469.67 -2.60 -14.33 16 9 C 0.15 2.16 6.11 85.63 0.52 2.68 16 10 C -0.15 -1.77 9.24 25.65 0.24 -1.53 16 11 C -0.14 -1.82 9.24 25.65 0.24 -1.58 16 12 C 0.15 2.99 6.11 85.63 0.52 3.51 16 13 N -0.71 -17.03 5.55 -466.77 -2.59 -19.62 16 14 C 0.53 19.30 7.85 87.66 0.69 19.99 16 15 O -0.57 -25.96 15.86 -3.04 -0.05 -26.01 16 16 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 17 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 18 C -0.55 -31.22 9.50 67.95 0.65 -30.57 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 22 Si 1.00 43.47 29.55 68.60 2.03 45.49 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 N -0.29 -5.84 12.08 -52.44 -0.63 -6.48 16 27 H 0.11 -0.45 8.14 -2.38 -0.02 -0.47 16 28 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.14 -1.33 8.14 -2.39 -0.02 -1.35 16 30 H 0.28 -1.18 8.06 -2.91 -0.02 -1.20 16 31 H 0.42 6.01 8.17 -92.71 -0.76 5.25 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.15 7.79 -2.39 -0.02 1.13 16 34 H 0.13 1.44 7.84 -2.91 -0.02 1.42 16 35 H 0.14 1.44 7.84 -2.91 -0.02 1.41 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.48 7.79 -2.38 -0.02 1.46 16 38 H 0.42 7.21 8.46 -92.71 -0.78 6.43 16 39 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -93.51 384.15 0.48 -93.03 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -0.46 Total: 12.11 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 9.26 Total: 13.00 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -9.07 Total: -111.00 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.12 Total: -43.06 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -93.51 0.48 -93.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.476 kcal (2) G-P(sol) polarization free energy of solvation -93.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds