Wall clock time and date at job start Sat Apr 11 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28510 * 124.44456 * 2 1 4 4 C 1.31128 * 109.06050 * 180.26298 * 3 2 1 5 5 C 1.40917 * 105.77634 * 0.02562 * 4 3 2 6 6 C 1.47805 * 127.24056 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99650 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00217 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99898 * 174.99491 * 8 6 5 10 10 C 1.53004 * 115.55225 * 279.61459 * 9 8 6 11 11 N 1.46504 * 109.46668 * 324.96493 * 10 9 8 12 12 C 1.34780 * 119.99442 * 174.90401 * 11 10 9 13 13 O 1.21278 * 120.00503 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99599 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.47026 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99918 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99904 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99764 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46827 * 90.00097 * 20 18 16 22 22 H 1.48497 * 109.47059 * 209.99758 * 20 18 16 23 23 H 1.48496 * 109.46865 * 329.99857 * 20 18 16 24 24 C 1.52996 * 117.49959 * 133.90736 * 9 8 6 25 25 C 1.53004 * 117.49861 * 65.28222 * 9 8 6 26 26 N 1.28591 * 124.44068 * 180.29911 * 2 1 3 27 27 H 1.08997 * 109.47023 * 269.69987 * 1 2 3 28 28 H 1.09001 * 109.47011 * 29.69917 * 1 2 3 29 29 H 1.09002 * 109.47137 * 149.69683 * 1 2 3 30 30 H 1.08000 * 127.11269 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99843 * 354.98809 * 8 6 5 32 32 H 1.09001 * 109.46909 * 84.95845 * 10 9 8 33 33 H 1.08995 * 109.47101 * 204.96036 * 10 9 8 34 34 H 0.96999 * 119.99946 * 354.90643 * 11 10 9 35 35 H 1.09000 * 109.47157 * 300.00307 * 14 12 11 36 36 H 1.09002 * 109.47060 * 60.00394 * 14 12 11 37 37 H 0.96999 * 120.00051 * 179.97438 * 19 18 16 38 38 H 1.09001 * 117.49554 * 359.97438 * 24 9 8 39 39 H 1.08998 * 117.50098 * 145.02188 * 24 9 8 40 40 H 1.09003 * 117.49691 * 214.97634 * 25 9 8 41 41 H 1.08994 * 117.50038 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4562 0.7119 -0.0057 5 6 3.4658 -0.6972 -0.0100 6 6 4.6486 -1.5836 -0.0175 7 8 5.7662 -1.1056 -0.0212 8 7 4.4879 -2.9218 -0.0214 9 6 5.6550 -3.7993 -0.1396 10 6 6.1955 -3.9913 -1.5581 11 7 5.0810 -3.9936 -2.5090 12 6 5.3255 -4.0460 -3.8334 13 8 6.4679 -4.0916 -4.2379 14 6 4.1790 -4.0490 -4.8116 15 16 4.8268 -4.1256 -6.5000 16 6 3.3167 -4.1154 -7.4078 17 1 2.3727 -4.0708 -6.8851 18 6 3.3404 -4.1648 -8.7947 19 7 4.4910 -4.2188 -9.4318 20 14 1.7394 -4.1534 -9.7572 21 1 1.3548 -2.7516 -10.0614 22 1 1.9193 -4.9037 -11.0260 23 1 0.6717 -4.7955 -8.9494 24 6 5.7439 -4.9894 0.8177 25 6 6.6685 -3.7851 1.0066 26 7 2.1923 -1.0605 -0.0055 27 1 -0.3633 -0.0054 1.0276 28 1 -0.3633 0.8927 -0.5092 29 1 -0.3633 -0.8873 -0.5185 30 1 4.3130 1.3694 -0.0076 31 1 3.5996 -3.3038 0.0541 32 1 6.8779 -3.1766 -1.8002 33 1 6.7271 -4.9408 -1.6189 34 1 4.1673 -3.9574 -2.1854 35 1 3.5455 -4.9163 -4.6262 36 1 3.5934 -3.1380 -4.6878 37 1 4.5076 -4.2537 -10.4010 38 1 4.9341 -5.1192 1.5358 39 1 6.1873 -5.9095 0.4371 40 1 7.7202 -3.9129 0.7501 41 1 6.4671 -3.1225 1.8483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705249182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:59 Heat of formation + Delta-G solvation = 73.146454 kcal Electronic energy + Delta-G solvation = -26233.341424 eV Core-core repulsion = 22278.816034 eV Total energy + Delta-G solvation = -3954.525390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.00796 -40.36783 -38.94564 -37.56923 -34.24203 -33.92332 -33.59315 -32.53648 -32.42168 -29.74140 -28.46762 -26.42045 -25.41447 -24.78587 -22.94603 -22.47608 -21.50842 -20.29711 -19.88139 -18.33231 -17.85289 -17.37252 -17.25565 -16.90798 -16.30033 -15.56882 -15.27971 -15.07285 -15.00139 -14.80054 -14.68231 -14.28546 -13.86289 -13.49041 -13.39618 -13.32241 -13.16043 -12.72198 -12.54539 -12.24948 -11.90138 -11.75452 -11.41169 -11.29219 -11.06360 -11.02005 -10.81381 -10.76543 -10.65088 -10.27397 -9.83070 -9.81198 -9.51450 -9.34346 -9.06386 -8.82821 -8.21956 -6.48441 -6.20842 -3.91106 0.94133 1.61430 1.75996 2.55602 2.96264 3.03886 3.13157 3.22075 3.26190 3.29712 3.37306 3.53047 3.74800 4.20896 4.25867 4.38824 4.50868 4.51044 4.58528 4.63425 4.78705 4.81740 5.14128 5.14975 5.26378 5.29578 5.30231 5.50906 5.59811 5.61331 5.66114 5.77031 5.84345 5.91118 6.11100 6.13863 6.15572 6.63639 7.05940 7.59881 7.71599 7.72990 7.85859 8.35721 8.64422 9.24229 10.86628 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.003037 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.264167 B = 9218.786997 C =11446.187552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.141 5.141 3 N -0.289 5.289 4 C 0.039 3.961 5 C -0.048 4.048 6 C 0.617 3.383 7 O -0.509 6.509 8 N -0.688 5.688 9 C 0.083 3.917 10 C 0.154 3.846 11 N -0.733 5.733 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.152 4.152 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.167 4.167 25 C -0.149 4.149 26 N -0.249 5.249 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.209 0.791 31 H 0.409 0.591 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.395 0.605 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 4.152 26.558 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.044 5.044 3 N -0.129 5.129 4 C -0.145 4.145 5 C -0.211 4.211 6 C 0.400 3.600 7 O -0.381 6.381 8 N -0.340 5.340 9 C -0.005 4.005 10 C 0.028 3.972 11 N -0.388 5.388 12 C 0.318 3.682 13 O -0.390 6.390 14 C -0.303 4.303 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.204 4.204 25 C -0.188 4.188 26 N -0.099 5.099 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.226 0.774 31 H 0.245 0.755 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.679 4.424 25.686 26.675 hybrid contribution -2.535 0.016 0.024 2.536 sum -8.214 4.440 25.710 27.353 Atomic orbital electron populations 1.22303 0.69451 1.06612 1.05342 1.48047 1.09332 0.99184 1.47808 1.74058 1.03843 1.15356 1.19599 1.24877 0.94356 0.93604 1.01664 1.22996 0.91209 0.94891 1.12003 1.16597 0.86086 0.81231 0.76085 1.90848 1.23680 1.75064 1.48512 1.45051 1.09546 1.04668 1.74769 1.20864 0.91161 0.96157 0.92311 1.21018 0.89473 1.02764 0.83934 1.45841 1.09399 1.77788 1.05767 1.20285 0.90734 0.75235 0.81975 1.90706 1.22785 1.47447 1.78070 1.23514 0.99680 1.04734 1.02328 1.85406 1.11423 1.96483 0.89834 1.22867 0.92941 1.58827 0.93793 0.91015 1.24987 0.97346 0.94560 0.96657 1.70017 1.24624 1.46739 1.08853 0.86176 0.82036 0.78292 0.79037 1.20295 1.20716 1.19726 1.23502 1.02820 0.93135 1.00981 1.23245 0.96997 0.99864 0.98655 1.74328 1.02910 1.15956 1.16658 0.88774 0.87383 0.87368 0.77414 0.75490 0.90211 0.90412 0.77088 0.89285 0.89511 0.92178 0.88058 0.87123 0.87350 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.55 59.85 0.69 1.09 16 2 N -0.14 -1.26 4.35 -16.63 -0.07 -1.33 16 3 N -0.29 -3.01 12.00 30.89 0.37 -2.64 16 4 C 0.04 0.41 12.04 -16.84 -0.20 0.21 16 5 C -0.05 -0.54 7.21 -82.68 -0.60 -1.13 16 6 C 0.62 7.27 7.76 -12.35 -0.10 7.17 16 7 O -0.51 -7.44 16.52 5.31 0.09 -7.35 16 8 N -0.69 -6.40 4.39 -48.55 -0.21 -6.61 16 9 C 0.08 0.78 2.01 -131.82 -0.27 0.51 16 10 C 0.15 1.94 5.90 -4.04 -0.02 1.91 16 11 N -0.73 -10.41 5.40 -60.29 -0.33 -10.74 16 12 C 0.53 10.34 7.85 -10.98 -0.09 10.26 16 13 O -0.52 -12.11 15.86 5.56 0.09 -12.02 16 14 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.17 -1.12 10.10 -26.73 -0.27 -1.39 16 25 C -0.15 -1.23 9.56 -26.73 -0.26 -1.48 16 26 N -0.25 -2.49 11.85 33.42 0.40 -2.09 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.21 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.41 3.02 8.61 -40.82 -0.35 2.66 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 34 H 0.40 4.62 7.76 -40.82 -0.32 4.30 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -38.70 379.93 -6.40 -45.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.27 Total: 3.86 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.68 Total: 1.08 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.89 Total: -49.05 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.70 -6.40 -45.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705249182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.239 kcal (2) G-P(sol) polarization free energy of solvation -38.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds