Wall clock time and date at job start Sat Apr 11 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28510 * 124.44456 * 2 1 4 4 C 1.31128 * 109.06050 * 180.26298 * 3 2 1 5 5 C 1.40917 * 105.77634 * 0.02562 * 4 3 2 6 6 C 1.47805 * 127.24056 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99650 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00217 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99898 * 174.99491 * 8 6 5 10 10 C 1.53004 * 115.55225 * 279.61459 * 9 8 6 11 11 N 1.46504 * 109.46668 * 324.96493 * 10 9 8 12 12 C 1.34780 * 119.99442 * 174.90401 * 11 10 9 13 13 O 1.21278 * 120.00503 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99599 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.47026 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99918 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99904 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99764 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46827 * 90.00097 * 20 18 16 22 22 H 1.48497 * 109.47059 * 209.99758 * 20 18 16 23 23 H 1.48496 * 109.46865 * 329.99857 * 20 18 16 24 24 C 1.52996 * 117.49959 * 133.90736 * 9 8 6 25 25 C 1.53004 * 117.49861 * 65.28222 * 9 8 6 26 26 N 1.28591 * 124.44068 * 180.29911 * 2 1 3 27 27 H 1.08997 * 109.47023 * 269.69987 * 1 2 3 28 28 H 1.09001 * 109.47011 * 29.69917 * 1 2 3 29 29 H 1.09002 * 109.47137 * 149.69683 * 1 2 3 30 30 H 1.08000 * 127.11269 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99843 * 354.98809 * 8 6 5 32 32 H 1.09001 * 109.46909 * 84.95845 * 10 9 8 33 33 H 1.08995 * 109.47101 * 204.96036 * 10 9 8 34 34 H 0.96999 * 119.99946 * 354.90643 * 11 10 9 35 35 H 1.09000 * 109.47157 * 300.00307 * 14 12 11 36 36 H 1.09002 * 109.47060 * 60.00394 * 14 12 11 37 37 H 0.96999 * 120.00051 * 179.97438 * 19 18 16 38 38 H 1.09001 * 117.49554 * 359.97438 * 24 9 8 39 39 H 1.08998 * 117.50098 * 145.02188 * 24 9 8 40 40 H 1.09003 * 117.49691 * 214.97634 * 25 9 8 41 41 H 1.08994 * 117.50038 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4562 0.7119 -0.0057 5 6 3.4658 -0.6972 -0.0100 6 6 4.6486 -1.5836 -0.0175 7 8 5.7662 -1.1056 -0.0212 8 7 4.4879 -2.9218 -0.0214 9 6 5.6550 -3.7993 -0.1396 10 6 6.1955 -3.9913 -1.5581 11 7 5.0810 -3.9936 -2.5090 12 6 5.3255 -4.0460 -3.8334 13 8 6.4679 -4.0916 -4.2379 14 6 4.1790 -4.0490 -4.8116 15 16 4.8268 -4.1256 -6.5000 16 6 3.3167 -4.1154 -7.4078 17 1 2.3727 -4.0708 -6.8851 18 6 3.3404 -4.1648 -8.7947 19 7 4.4910 -4.2188 -9.4318 20 14 1.7394 -4.1534 -9.7572 21 1 1.3548 -2.7516 -10.0614 22 1 1.9193 -4.9037 -11.0260 23 1 0.6717 -4.7955 -8.9494 24 6 5.7439 -4.9894 0.8177 25 6 6.6685 -3.7851 1.0066 26 7 2.1923 -1.0605 -0.0055 27 1 -0.3633 -0.0054 1.0276 28 1 -0.3633 0.8927 -0.5092 29 1 -0.3633 -0.8873 -0.5185 30 1 4.3130 1.3694 -0.0076 31 1 3.5996 -3.3038 0.0541 32 1 6.8779 -3.1766 -1.8002 33 1 6.7271 -4.9408 -1.6189 34 1 4.1673 -3.9574 -2.1854 35 1 3.5455 -4.9163 -4.6262 36 1 3.5934 -3.1380 -4.6878 37 1 4.5076 -4.2537 -10.4010 38 1 4.9341 -5.1192 1.5358 39 1 6.1873 -5.9095 0.4371 40 1 7.7202 -3.9129 0.7501 41 1 6.4671 -3.1225 1.8483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705249182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:58 Heat of formation + Delta-G solvation = 42.221585 kcal Electronic energy + Delta-G solvation = -26234.682427 eV Core-core repulsion = 22278.816034 eV Total energy + Delta-G solvation = -3955.866393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.74141 -41.31071 -40.35650 -38.47720 -35.27227 -34.91820 -34.59430 -34.34300 -33.29834 -31.31661 -29.01846 -27.88886 -27.31265 -25.58247 -23.58124 -23.15863 -22.29197 -21.78333 -20.76132 -19.87910 -19.03216 -18.10586 -18.01876 -17.93360 -17.76508 -16.89221 -16.75591 -16.48754 -16.08777 -15.93212 -15.68839 -15.51406 -15.08423 -14.68115 -14.60861 -14.36710 -13.86196 -13.69964 -13.59711 -13.42896 -13.18045 -13.04374 -12.90004 -12.62549 -12.39383 -12.18801 -12.02037 -11.74357 -11.58628 -11.53918 -11.15502 -11.12711 -10.98071 -10.55954 -10.30009 -10.27474 -10.12591 -8.68501 -8.35480 -6.14178 0.14983 0.82961 1.20146 1.24808 1.41856 1.45095 1.55593 1.57022 1.80227 2.09982 2.22889 2.26730 2.68871 2.80818 2.98647 3.30270 3.47396 3.69923 3.82378 3.87008 3.95414 4.03847 4.24073 4.27267 4.30237 4.44991 4.45920 4.47610 4.60932 4.65711 4.69692 4.77805 4.88029 5.01352 5.21386 5.25321 5.40335 5.44888 5.48778 6.18623 6.28667 6.42368 6.95282 7.04647 7.05429 7.18224 8.73890 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.003037 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.264167 B = 9218.786997 C =11446.187552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.134 5.134 3 N -0.300 5.300 4 C 0.025 3.975 5 C -0.069 4.069 6 C 0.615 3.385 7 O -0.546 6.546 8 N -0.674 5.674 9 C 0.063 3.937 10 C 0.155 3.845 11 N -0.707 5.707 12 C 0.532 3.468 13 O -0.563 6.563 14 C -0.127 4.127 15 S -0.149 6.149 16 C -0.548 4.548 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.256 1.256 24 C -0.132 4.132 25 C -0.153 4.153 26 N -0.245 5.245 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.218 0.782 31 H 0.420 0.580 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.271 0.729 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 3.366 28.220 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.039 5.039 3 N -0.141 5.141 4 C -0.157 4.157 5 C -0.230 4.230 6 C 0.399 3.601 7 O -0.421 6.421 8 N -0.326 5.326 9 C -0.024 4.024 10 C 0.029 3.971 11 N -0.360 5.360 12 C 0.318 3.682 13 O -0.441 6.441 14 C -0.278 4.278 15 S 0.078 5.922 16 C -0.696 4.696 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.180 1.180 24 C -0.170 4.170 25 C -0.191 4.191 26 N -0.095 5.095 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.235 0.765 31 H 0.258 0.742 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.248 0.752 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.800 3.620 27.413 29.017 hybrid contribution -1.628 0.284 -0.355 1.690 sum -10.427 3.904 27.058 29.259 Atomic orbital electron populations 1.22815 0.66808 1.08043 1.07363 1.48632 1.10721 0.98568 1.45933 1.74051 1.03897 1.16028 1.20112 1.25140 0.94948 0.93885 1.01775 1.22935 0.91492 0.95015 1.13549 1.16765 0.85792 0.81965 0.75549 1.90827 1.25042 1.75811 1.50413 1.44943 1.10164 1.03878 1.73625 1.20753 0.92150 0.98624 0.90885 1.21080 0.88616 1.02105 0.85251 1.45567 1.10923 1.75386 1.04169 1.20086 0.89507 0.75207 0.83381 1.90695 1.24275 1.50063 1.79099 1.23338 1.00164 1.06493 0.97845 1.85601 1.13978 1.96835 0.95746 1.23202 0.92975 1.58923 0.94458 0.89931 1.26143 1.01494 0.93656 0.97812 1.70185 1.27480 1.47801 1.09296 0.84944 0.76990 0.78705 0.77275 1.19411 1.20194 1.18001 1.23622 1.02158 0.92260 0.98938 1.23295 0.97191 1.01035 0.97628 1.74284 1.02476 1.16277 1.16489 0.86448 0.86142 0.85818 0.76549 0.74163 0.93262 0.89448 0.75233 0.86870 0.88017 0.91954 0.85946 0.85827 0.87243 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.55 127.77 1.48 1.93 16 2 N -0.13 -2.16 4.35 -206.53 -0.90 -3.06 16 3 N -0.30 -5.98 12.00 -56.17 -0.67 -6.65 16 4 C 0.03 0.53 12.04 85.45 1.03 1.56 16 5 C -0.07 -1.48 7.21 42.24 0.30 -1.18 16 6 C 0.62 14.25 7.76 86.77 0.67 14.92 16 7 O -0.55 -16.28 16.52 -3.90 -0.06 -16.35 16 8 N -0.67 -11.47 4.39 -425.79 -1.87 -13.34 16 9 C 0.06 1.09 2.01 3.61 0.01 1.10 16 10 C 0.15 3.80 5.90 86.38 0.51 4.31 16 11 N -0.71 -19.23 5.40 -463.04 -2.50 -21.73 16 12 C 0.53 20.61 7.85 87.66 0.69 21.30 16 13 O -0.56 -27.15 15.86 -3.02 -0.05 -27.20 16 14 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 15 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 16 C -0.55 -31.56 9.50 67.96 0.65 -30.91 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.79 5.49 84.86 0.47 1.25 16 19 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 20 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 24 C -0.13 -1.34 10.10 30.59 0.31 -1.04 16 25 C -0.15 -2.29 9.56 30.60 0.29 -1.99 16 26 N -0.24 -4.48 11.85 -48.17 -0.57 -5.05 16 27 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.22 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.42 5.16 8.61 -92.71 -0.80 4.36 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 2.01 7.91 -2.39 -0.02 1.99 16 34 H 0.41 8.65 7.76 -92.71 -0.72 7.93 16 35 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 36 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 39 H 0.12 1.02 8.05 -2.39 -0.02 1.00 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -87.00 379.93 0.94 -86.06 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.43 Total: 20.93 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.84 Total: 6.47 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -6.23 Total: -105.95 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.11 Total: -43.55 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -87.00 0.94 -86.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705249182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.280 kcal (2) G-P(sol) polarization free energy of solvation -86.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds