Wall clock time and date at job start Sat Apr 11 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47006 * 111.00285 * 293.63247 * 13 12 10 15 15 C 1.53101 * 109.26190 * 177.60744 * 14 13 12 16 16 O 1.43020 * 109.25617 * 56.84928 * 15 14 13 17 17 C 1.43021 * 113.73919 * 301.33283 * 16 15 14 18 18 H 1.09002 * 109.53708 * 298.71433 * 17 16 15 19 19 C 1.52993 * 109.50552 * 178.60518 * 17 16 15 20 20 N 1.46497 * 109.47318 * 65.21658 * 19 17 16 21 21 C 1.34777 * 120.00147 * 179.97438 * 20 19 17 22 22 O 1.21500 * 119.99960 * 0.02562 * 21 20 19 23 23 C 1.48275 * 120.00274 * 179.97438 * 21 20 19 24 24 C 1.47487 * 128.71501 * 179.70343 * 23 21 20 25 25 N 1.30643 * 102.71813 * 179.85650 * 24 23 21 26 26 O 1.20837 * 109.61919 * 0.42272 * 25 24 23 27 27 N 1.20906 * 115.90916 * 359.70047 * 26 25 24 28 28 C 1.47016 * 110.99837 * 169.99736 * 13 12 10 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.08998 * 109.50801 * 297.54617 * 14 13 12 34 34 H 1.08998 * 109.50572 * 57.67603 * 14 13 12 35 35 H 1.09002 * 109.50522 * 296.91967 * 15 14 13 36 36 H 1.08993 * 109.54601 * 176.80294 * 15 14 13 37 37 H 1.09002 * 109.46825 * 185.21933 * 19 17 16 38 38 H 1.09000 * 109.47253 * 305.21405 * 19 17 16 39 39 H 0.96998 * 120.00025 * 0.02562 * 20 19 17 40 40 H 1.08001 * 128.64194 * 359.97438 * 24 23 21 41 41 H 1.08996 * 109.50975 * 302.32925 * 28 13 12 42 42 H 1.08999 * 109.50547 * 62.41508 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9592 -6.0218 -1.2589 15 6 3.9809 -7.1601 -1.1931 16 8 3.3003 -8.3902 -0.9303 17 6 2.5498 -8.3843 0.2872 18 1 3.2226 -8.2220 1.1293 19 6 1.8368 -9.7276 0.4543 20 7 2.8309 -10.7905 0.6226 21 6 2.4311 -12.0669 0.7883 22 8 1.2464 -12.3361 0.7977 23 6 3.4372 -13.1428 0.9581 24 6 3.2180 -14.5876 1.1570 25 7 4.4354 -15.0542 1.2419 26 8 5.2260 -14.1466 1.1360 27 7 4.7497 -13.0470 0.9750 28 6 1.5137 -7.2583 0.2362 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.2768 -6.1929 -2.0915 34 1 3.4787 -5.0743 -1.4021 35 1 4.6957 -6.9618 -0.3943 36 1 4.5085 -7.2320 -2.1441 37 1 1.1926 -9.6901 1.3327 38 1 1.2334 -9.9312 -0.4303 39 1 3.7767 -10.5755 0.6155 40 1 2.2838 -15.1263 1.2157 41 1 0.9780 -7.2136 1.1844 42 1 0.8076 -7.4489 -0.5720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714479960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:01 Heat of formation + Delta-G solvation = 17.438818 kcal Electronic energy + Delta-G solvation = -28433.975106 eV Core-core repulsion = 24034.281181 eV Total energy + Delta-G solvation = -4399.693925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.40602 -40.38321 -39.62300 -38.13954 -35.73458 -35.30978 -35.00974 -34.95890 -33.88285 -31.82767 -31.31315 -29.15845 -27.77135 -26.05257 -25.03003 -24.46068 -23.85379 -22.62348 -21.40466 -20.42020 -19.51936 -19.32293 -19.02750 -18.09464 -17.88783 -16.88631 -16.59870 -16.13997 -15.93393 -15.57254 -15.39892 -15.14056 -14.87465 -14.73687 -14.26085 -14.10473 -13.74494 -13.59996 -13.36805 -13.28605 -13.14514 -12.44370 -12.40765 -12.08166 -11.84683 -11.78245 -11.56673 -11.34781 -11.27597 -11.26512 -10.99293 -10.94775 -10.58326 -10.43074 -10.27166 -9.78305 -9.65945 -9.53036 -8.54613 -8.07188 -7.98041 -6.46958 -3.88119 0.24867 0.83475 2.11616 2.44838 2.91016 2.99720 3.13881 3.23240 3.28607 3.40255 3.52221 3.76577 3.84031 4.16786 4.25916 4.32978 4.57765 4.72115 4.83796 4.86984 4.94898 5.08784 5.18363 5.22159 5.27878 5.37984 5.47360 5.55453 5.68281 5.72103 5.80597 5.80697 6.03840 6.18214 6.22591 6.81103 6.97722 7.05874 7.19633 7.45051 7.50128 7.90644 8.00249 8.55274 9.12308 9.47987 9.99068 10.70557 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036093 B = 0.001723 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.598168 B =16245.847035 C =16661.669472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.014 3.986 15 C 0.069 3.931 16 O -0.385 6.385 17 C 0.083 3.917 18 H 0.077 0.923 19 C 0.129 3.871 20 N -0.700 5.700 21 C 0.606 3.394 22 O -0.514 6.514 23 C -0.042 4.042 24 C 0.039 3.961 25 N -0.353 5.353 26 O 0.344 5.656 27 N -0.318 5.318 28 C 0.026 3.974 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.413 0.587 40 H 0.228 0.772 41 H 0.088 0.912 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 -24.756 0.943 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.114 4.114 15 C -0.008 4.008 16 O -0.305 6.305 17 C 0.024 3.976 18 H 0.095 0.905 19 C 0.006 3.994 20 N -0.352 5.352 21 C 0.388 3.612 22 O -0.388 6.388 23 C -0.207 4.207 24 C -0.147 4.147 25 N -0.076 5.076 26 O 0.117 5.883 27 N -0.038 5.038 28 C -0.103 4.103 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.249 0.751 40 H 0.245 0.755 41 H 0.107 0.893 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.284 -24.936 1.246 25.332 hybrid contribution -1.438 1.240 -0.547 1.977 sum 2.846 -23.695 0.699 23.876 Atomic orbital electron populations 1.69612 1.05952 1.28238 1.50366 1.25271 0.95640 0.99768 0.97216 0.85851 0.79248 0.80760 0.78392 1.20405 1.20897 1.19396 1.19695 0.93368 0.82157 1.47749 0.87868 1.41866 1.09222 1.04588 1.64152 1.19676 0.88384 0.84480 0.84667 1.90477 1.13660 1.86861 1.55383 1.21873 0.93822 0.91010 1.01774 1.61770 1.25510 1.01120 1.35316 1.22970 0.96913 1.02000 0.89495 1.22702 0.93926 0.82380 1.01779 1.87945 1.65880 1.36159 1.40484 1.22301 0.93562 0.92913 0.88797 0.90476 1.21524 0.90541 0.83940 1.03445 1.45710 1.11858 1.05857 1.71732 1.16409 0.85957 0.81087 0.77754 1.90864 1.15473 1.82223 1.50253 1.26237 0.90668 0.96457 1.07357 1.27766 0.97877 0.90162 0.98929 1.75097 1.01408 1.14632 1.16487 1.85109 1.33747 1.07496 1.61949 1.75423 1.10421 1.05704 1.12227 1.22659 0.95549 0.89798 1.02304 0.91818 0.77462 0.89114 0.93216 0.94852 0.86682 0.91875 0.88412 0.88931 0.89727 0.75092 0.75527 0.89347 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 10 C 0.44 9.99 7.49 -10.98 -0.08 9.90 16 11 O -0.58 -14.86 13.92 5.55 0.08 -14.78 16 12 C 0.05 0.78 5.45 -4.97 -0.03 0.75 16 13 N -0.51 -7.93 4.46 -235.75 -1.05 -8.99 16 14 C 0.01 0.21 5.29 -3.71 -0.02 0.19 16 15 C 0.07 0.86 7.01 37.21 0.26 1.12 16 16 O -0.39 -4.57 10.42 -35.23 -0.37 -4.94 16 17 C 0.08 0.85 2.84 -26.68 -0.08 0.78 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 19 C 0.13 1.13 5.34 -4.05 -0.02 1.10 16 20 N -0.70 -6.06 5.50 -61.12 -0.34 -6.39 16 21 C 0.61 5.76 7.85 -12.13 -0.10 5.67 16 22 O -0.51 -6.10 17.05 5.37 0.09 -6.01 16 23 C -0.04 -0.34 7.56 -80.07 -0.61 -0.95 16 24 C 0.04 0.25 12.63 -14.29 -0.18 0.07 16 25 N -0.35 -2.66 12.22 30.71 0.38 -2.28 16 26 O 0.34 2.69 11.65 27.26 0.32 3.00 16 27 N -0.32 -2.63 12.13 33.49 0.41 -2.23 16 28 C 0.03 0.30 4.93 -3.71 -0.02 0.28 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 31 H 0.09 1.36 8.04 -51.93 -0.42 0.95 16 32 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.12 2.12 5.88 -51.93 -0.31 1.82 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.41 3.29 8.33 -40.82 -0.34 2.95 16 40 H 0.23 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -31.92 365.00 -5.57 -37.48 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.12 Total: 10.01 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -1.11 Total: 11.14 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.06 Total: -57.01 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.12 Total: -22.73 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.92 -5.57 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714479960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.923 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds