Wall clock time and date at job start Sat Apr 11 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47006 * 111.00285 * 293.63247 * 13 12 10 15 15 C 1.53101 * 109.26190 * 177.60744 * 14 13 12 16 16 O 1.43020 * 109.25617 * 56.84928 * 15 14 13 17 17 C 1.43021 * 113.73919 * 301.33283 * 16 15 14 18 18 H 1.09002 * 109.53708 * 298.71433 * 17 16 15 19 19 C 1.52993 * 109.50552 * 178.60518 * 17 16 15 20 20 N 1.46497 * 109.47318 * 65.21658 * 19 17 16 21 21 C 1.34777 * 120.00147 * 179.97438 * 20 19 17 22 22 O 1.21500 * 119.99960 * 0.02562 * 21 20 19 23 23 C 1.48275 * 120.00274 * 179.97438 * 21 20 19 24 24 C 1.47487 * 128.71501 * 179.70343 * 23 21 20 25 25 N 1.30643 * 102.71813 * 179.85650 * 24 23 21 26 26 O 1.20837 * 109.61919 * 0.42272 * 25 24 23 27 27 N 1.20906 * 115.90916 * 359.70047 * 26 25 24 28 28 C 1.47016 * 110.99837 * 169.99736 * 13 12 10 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.08998 * 109.50801 * 297.54617 * 14 13 12 34 34 H 1.08998 * 109.50572 * 57.67603 * 14 13 12 35 35 H 1.09002 * 109.50522 * 296.91967 * 15 14 13 36 36 H 1.08993 * 109.54601 * 176.80294 * 15 14 13 37 37 H 1.09002 * 109.46825 * 185.21933 * 19 17 16 38 38 H 1.09000 * 109.47253 * 305.21405 * 19 17 16 39 39 H 0.96998 * 120.00025 * 0.02562 * 20 19 17 40 40 H 1.08001 * 128.64194 * 359.97438 * 24 23 21 41 41 H 1.08996 * 109.50975 * 302.32925 * 28 13 12 42 42 H 1.08999 * 109.50547 * 62.41508 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9592 -6.0218 -1.2589 15 6 3.9809 -7.1601 -1.1931 16 8 3.3003 -8.3902 -0.9303 17 6 2.5498 -8.3843 0.2872 18 1 3.2226 -8.2220 1.1293 19 6 1.8368 -9.7276 0.4543 20 7 2.8309 -10.7905 0.6226 21 6 2.4311 -12.0669 0.7883 22 8 1.2464 -12.3361 0.7977 23 6 3.4372 -13.1428 0.9581 24 6 3.2180 -14.5876 1.1570 25 7 4.4354 -15.0542 1.2419 26 8 5.2260 -14.1466 1.1360 27 7 4.7497 -13.0470 0.9750 28 6 1.5137 -7.2583 0.2362 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.2768 -6.1929 -2.0915 34 1 3.4787 -5.0743 -1.4021 35 1 4.6957 -6.9618 -0.3943 36 1 4.5085 -7.2320 -2.1441 37 1 1.1926 -9.6901 1.3327 38 1 1.2334 -9.9312 -0.4303 39 1 3.7767 -10.5755 0.6155 40 1 2.2838 -15.1263 1.2157 41 1 0.9780 -7.2136 1.1844 42 1 0.8076 -7.4489 -0.5720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714479960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:00 Heat of formation + Delta-G solvation = -9.318656 kcal Electronic energy + Delta-G solvation = -28435.135397 eV Core-core repulsion = 24034.281181 eV Total energy + Delta-G solvation = -4400.854216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.98228 -41.25940 -40.67554 -39.73639 -36.83171 -36.18091 -35.76891 -35.69862 -35.54915 -33.28360 -32.71477 -30.42068 -28.72096 -27.22946 -26.25402 -25.19589 -25.05070 -23.60677 -22.13285 -21.41283 -21.01661 -20.10312 -19.90312 -19.68044 -18.70095 -18.00827 -17.53535 -17.27718 -17.13451 -16.58251 -16.46599 -16.26061 -16.10561 -15.85037 -15.57704 -15.39673 -15.13519 -14.77181 -14.64419 -14.03735 -13.88768 -13.81137 -13.49716 -13.24931 -13.01797 -12.99323 -12.86302 -12.43989 -12.42533 -12.36311 -12.26741 -12.12201 -11.87701 -11.76433 -11.59200 -11.43363 -10.82478 -10.37988 -10.22898 -9.99920 -9.32121 -8.46568 -5.95055 -0.38628 0.30748 1.37719 1.41893 1.44339 1.54305 1.75110 2.04850 2.25761 2.31468 2.44114 2.58455 2.66620 2.89165 3.20312 3.34358 3.65906 3.71490 3.73673 3.87990 3.98474 4.07897 4.16848 4.31581 4.41679 4.44210 4.46699 4.48812 4.56543 4.60551 4.64506 4.85152 4.92450 5.01475 5.08160 5.41164 5.77910 5.95581 6.05097 6.10443 6.14598 6.60349 6.74368 7.13079 7.32705 7.56546 8.11859 8.70667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036093 B = 0.001723 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.598168 B =16245.847035 C =16661.669472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.016 3.984 15 C 0.077 3.923 16 O -0.387 6.387 17 C 0.086 3.914 18 H 0.078 0.922 19 C 0.135 3.865 20 N -0.696 5.696 21 C 0.610 3.390 22 O -0.539 6.539 23 C -0.053 4.053 24 C 0.054 3.946 25 N -0.363 5.363 26 O 0.341 5.659 27 N -0.323 5.323 28 C 0.026 3.974 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.417 0.583 40 H 0.257 0.743 41 H 0.109 0.891 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -26.015 1.212 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.500 6.500 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.112 4.112 15 C 0.001 3.999 16 O -0.306 6.306 17 C 0.028 3.972 18 H 0.096 0.904 19 C 0.012 3.988 20 N -0.347 5.347 21 C 0.392 3.608 22 O -0.415 6.415 23 C -0.219 4.219 24 C -0.132 4.132 25 N -0.088 5.088 26 O 0.115 5.885 27 N -0.042 5.042 28 C -0.102 4.102 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.253 0.747 40 H 0.273 0.727 41 H 0.127 0.873 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.621 -26.199 1.512 26.491 hybrid contribution -1.206 1.550 -0.626 2.062 sum 2.415 -24.648 0.886 24.782 Atomic orbital electron populations 1.69671 1.06801 1.29241 1.50408 1.26015 0.96522 1.02366 0.96366 0.84942 0.77897 0.77009 0.78584 1.19718 1.19661 1.19794 1.19648 0.92697 0.83955 1.49798 0.90231 1.41934 1.09321 1.04701 1.65168 1.20723 0.88313 0.85854 0.82247 1.90459 1.15589 1.87730 1.56190 1.21746 0.93501 0.88343 1.03697 1.61725 1.25970 1.02396 1.35459 1.22857 0.97383 1.01179 0.89796 1.22611 0.93039 0.81750 1.02547 1.87954 1.65967 1.35448 1.41269 1.22345 0.93228 0.93388 0.88229 0.90369 1.21475 0.90317 0.82957 1.04036 1.45700 1.12087 1.05750 1.71205 1.16466 0.85779 0.81322 0.77187 1.90851 1.16456 1.82618 1.51595 1.26169 0.90449 0.96982 1.08257 1.28254 0.98482 0.89386 0.97056 1.75113 1.01813 1.14629 1.17265 1.85110 1.33886 1.07395 1.62076 1.75404 1.10630 1.06066 1.12108 1.22780 0.95859 0.87927 1.03659 0.91354 0.77040 0.86680 0.91510 0.94437 0.90478 0.92559 0.86676 0.87424 0.90002 0.74682 0.72706 0.87314 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 3 Si 0.99 42.33 29.55 68.60 2.03 44.35 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -28.64 5.29 -306.98 -1.62 -30.27 16 10 C 0.44 20.17 7.49 87.66 0.66 20.83 16 11 O -0.61 -32.43 13.92 -3.07 -0.04 -32.47 16 12 C 0.06 1.89 5.45 85.56 0.47 2.35 16 13 N -0.53 -15.77 4.46 -899.79 -4.01 -19.78 16 14 C 0.02 0.48 5.29 86.32 0.46 0.94 16 15 C 0.08 1.86 7.01 72.02 0.50 2.37 16 16 O -0.39 -8.50 10.42 -148.98 -1.55 -10.05 16 17 C 0.09 1.60 2.84 30.62 0.09 1.68 16 18 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 19 C 0.14 2.06 5.34 86.38 0.46 2.52 16 20 N -0.70 -10.82 5.50 -465.57 -2.56 -13.38 16 21 C 0.61 10.62 7.85 86.91 0.68 11.31 16 22 O -0.54 -11.90 17.05 -3.72 -0.06 -11.97 16 23 C -0.05 -0.80 7.56 44.29 0.33 -0.46 16 24 C 0.05 0.59 12.63 87.31 1.10 1.69 16 25 N -0.36 -4.94 12.22 -61.44 -0.75 -5.69 16 26 O 0.34 4.98 11.65 140.85 1.64 6.62 16 27 N -0.32 -4.99 12.13 -52.05 -0.63 -5.62 16 28 C 0.03 0.54 4.93 86.31 0.43 0.96 16 29 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 31 H 0.12 3.20 8.04 -2.39 -0.02 3.18 16 32 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 2.94 5.88 -2.39 -0.01 2.92 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.42 5.99 8.33 -92.71 -0.77 5.21 16 40 H 0.26 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.11 1.82 8.09 -2.39 -0.02 1.80 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.43 365.00 -1.24 -70.67 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.41 Total: 29.87 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.46 Total: 26.35 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -9.30 Total: -123.38 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.02 Total: -47.87 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.43 -1.24 -70.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714479960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.352 kcal (2) G-P(sol) polarization free energy of solvation -69.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds