Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99777 * 2 1 4 4 O 1.21281 * 120.00250 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00209 * 0.02562 * 3 2 1 6 6 S 1.81001 * 109.47439 * 180.02562 * 5 3 2 7 7 C 1.76204 * 100.00089 * 180.02562 * 6 5 3 8 8 H 1.08004 * 119.99670 * 359.97438 * 7 6 5 9 9 C 1.38793 * 120.00025 * 180.02562 * 7 6 5 10 10 N 1.31630 * 120.00216 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99971 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46810 * 90.00149 * 11 9 7 13 13 H 1.48501 * 109.47221 * 209.99741 * 11 9 7 14 14 H 1.48498 * 109.47315 * 329.99872 * 11 9 7 15 15 C 1.46499 * 120.00429 * 180.02562 * 2 1 3 16 16 C 1.53935 * 113.73257 * 321.23094 * 15 2 1 17 17 N 1.48193 * 86.10337 * 90.77914 * 16 15 2 18 18 C 1.46894 * 111.06841 * 137.52059 * 17 16 15 19 19 C 1.50706 * 109.47039 * 90.57145 * 18 17 16 20 20 C 1.38233 * 120.40318 * 269.71914 * 19 18 17 21 21 N 1.31842 * 120.82076 * 179.72330 * 20 19 18 22 22 C 1.31872 * 121.75034 * 0.54304 * 21 20 19 23 23 C 1.38424 * 120.72636 * 359.74998 * 22 21 20 24 24 F 1.35101 * 120.44721 * 179.97438 * 23 22 21 25 25 C 1.38582 * 120.40483 * 89.99530 * 19 18 17 26 26 C 1.47967 * 90.79407 * 24.60047 * 17 16 15 27 27 H 1.09005 * 109.47138 * 269.99436 * 1 2 3 28 28 H 1.08993 * 109.47587 * 29.99946 * 1 2 3 29 29 H 1.08999 * 109.47189 * 150.00247 * 1 2 3 30 30 H 1.09006 * 109.47064 * 299.99915 * 5 3 2 31 31 H 1.09001 * 109.47474 * 59.99912 * 5 3 2 32 32 H 0.97001 * 120.00190 * 180.02562 * 10 9 7 33 33 H 1.09002 * 112.93874 * 189.66421 * 15 2 1 34 34 H 1.09000 * 113.76137 * 205.06289 * 16 15 2 35 35 H 1.09002 * 113.75885 * 336.42988 * 16 15 2 36 36 H 1.09001 * 109.46796 * 210.56619 * 18 17 16 37 37 H 1.08997 * 109.47858 * 330.56663 * 18 17 16 38 38 H 1.08002 * 119.58907 * 0.02562 * 20 19 18 39 39 H 1.07994 * 119.63730 * 179.72640 * 22 21 20 40 40 H 1.07996 * 120.80328 * 0.02960 * 25 19 18 41 41 H 1.09001 * 113.75575 * 221.08036 * 26 17 16 42 42 H 1.08993 * 113.75515 * 89.72269 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5614 3.8481 -0.0003 7 6 1.4412 5.2083 0.0013 8 1 0.3759 5.0304 0.0020 9 6 1.9279 6.5081 0.0006 10 7 3.2262 6.7248 -0.0008 11 14 0.7403 7.9500 0.0016 12 1 0.4271 8.3323 1.4021 13 1 1.3609 9.1029 -0.6992 14 1 -0.5110 7.5612 -0.6971 15 6 2.1975 -1.2687 -0.0006 16 6 1.5559 -2.3550 0.8813 17 7 0.8109 -2.7591 -0.3343 18 6 0.7705 -4.2215 -0.4671 19 6 -0.4567 -4.7551 0.2261 20 6 -0.4052 -5.1174 1.5591 21 7 -1.4751 -5.5801 2.1752 22 6 -2.6270 -5.7261 1.5500 23 6 -2.7538 -5.3900 0.2132 24 9 -3.9365 -5.5424 -0.4218 25 6 -1.6489 -4.8940 -0.4665 26 6 1.8625 -2.1771 -1.1973 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7583 2.5302 -0.8892 31 1 0.7589 2.5299 0.8908 32 1 3.5663 7.6332 -0.0009 33 1 3.2669 -1.1418 0.1680 34 1 2.2612 -3.1072 1.2345 35 1 0.9221 -1.9588 1.6747 36 1 0.7367 -4.4895 -1.5231 37 1 1.6617 -4.6526 -0.0112 38 1 0.5217 -5.0156 2.1040 39 1 -3.4807 -6.1125 2.0869 40 1 -1.7171 -4.6236 -1.5098 41 1 1.4732 -1.6391 -2.0616 42 1 2.6576 -2.8772 -1.4534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716736365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = -16.534686 kcal Electronic energy + Delta-G solvation = -25895.879559 eV Core-core repulsion = 21917.545342 eV Total energy + Delta-G solvation = -3978.334217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.00246 -41.86474 -40.98582 -39.76387 -36.08278 -34.58611 -34.33428 -32.39913 -31.12036 -29.42097 -27.82328 -27.66179 -27.13723 -25.48278 -24.68892 -22.80636 -21.88476 -19.96384 -19.42575 -18.51643 -18.34633 -18.11508 -17.80635 -17.31609 -16.88512 -16.87038 -16.84341 -16.38035 -16.15439 -15.66307 -15.36645 -14.89006 -14.55451 -14.49056 -14.42719 -14.32051 -14.11359 -13.63269 -13.56547 -13.41768 -13.17433 -13.10085 -12.96475 -12.88958 -12.62484 -12.59416 -12.10933 -12.05322 -11.70721 -11.14322 -10.91852 -10.75522 -10.63282 -10.27471 -9.97410 -9.77601 -9.61566 -8.67184 -8.34727 -6.12875 -0.12253 0.07181 1.25324 1.42385 1.45543 1.54734 1.56402 2.08762 2.27434 2.51548 2.91826 2.99303 2.99358 3.26728 3.44449 3.52248 3.66322 3.75648 3.76949 3.83994 3.92554 4.07013 4.18346 4.21646 4.36650 4.39964 4.46575 4.51288 4.63471 4.67573 4.71226 4.80844 4.85789 4.87034 4.93816 5.02450 5.08006 5.30340 5.41677 5.60738 5.63915 5.94922 6.19709 6.30245 6.79258 7.06551 7.14131 8.74467 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002059 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.568074 B =13595.472322 C =14492.271554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.587 5.587 3 C 0.533 3.467 4 O -0.564 6.564 5 C -0.123 4.123 6 S -0.150 6.150 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.998 3.002 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.258 1.258 15 C 0.098 3.902 16 C 0.005 3.995 17 N -0.478 5.478 18 C 0.061 3.939 19 C -0.090 4.090 20 C 0.092 3.908 21 N -0.480 5.480 22 C 0.063 3.937 23 C 0.036 3.964 24 F -0.138 7.138 25 C -0.094 4.094 26 C 0.006 3.994 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.088 0.912 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 -28.910 -0.807 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.319 5.319 3 C 0.321 3.679 4 O -0.442 6.442 5 C -0.274 4.274 6 S 0.077 5.923 7 C -0.693 4.693 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.820 3.180 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.182 1.182 15 C -0.007 4.007 16 C -0.124 4.124 17 N -0.201 5.201 18 C -0.067 4.067 19 C -0.092 4.092 20 C -0.065 4.065 21 N -0.188 5.188 22 C -0.095 4.095 23 C 0.014 3.986 24 F -0.116 7.116 25 C -0.121 4.121 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.177 0.823 41 H 0.106 0.894 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.733 -28.865 -0.041 30.461 hybrid contribution -1.355 0.961 -0.845 1.864 sum -11.088 -27.903 -0.886 30.039 Atomic orbital electron populations 1.22040 0.77168 1.04739 1.02669 1.47423 1.08027 1.03762 1.72695 1.20110 0.87246 0.85370 0.75139 1.90669 1.15500 1.87444 1.50591 1.23365 1.02717 0.95142 1.06172 1.85527 1.12551 0.97189 1.97017 1.23181 0.94588 0.92678 1.58876 0.90055 1.26121 0.97609 1.01660 0.93747 1.70179 1.14062 1.22477 1.47985 0.84960 0.77898 0.76360 0.78802 1.19316 1.20234 1.18233 1.22529 0.97063 0.83062 0.98049 1.24528 0.96704 0.96441 0.94715 1.68586 1.37852 1.09659 1.03957 1.21656 0.94207 0.89014 1.01835 1.20713 0.95757 0.97980 0.94778 1.23118 0.97453 0.94064 0.91915 1.67776 0.99437 1.12953 1.38637 1.23161 0.97296 0.98513 0.90533 1.18957 0.82550 1.04036 0.93035 1.91518 1.44505 1.93586 1.82029 1.21777 0.91080 0.96917 1.02324 1.24405 0.94437 0.96612 0.96911 0.92282 0.91386 0.87328 0.87602 0.87820 0.91977 0.89000 0.87251 0.89361 0.88029 0.89770 0.80595 0.80386 0.82283 0.89383 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 9.23 127.77 1.18 2.70 16 2 N -0.59 -15.25 3.09 -826.84 -2.56 -17.81 16 3 C 0.53 19.91 7.69 87.66 0.67 20.58 16 4 O -0.56 -25.82 15.34 -3.03 -0.05 -25.86 16 5 C -0.12 -4.97 4.71 71.24 0.34 -4.63 16 6 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 7 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 C 0.01 0.77 5.49 84.86 0.47 1.23 16 10 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 11 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 15 C 0.10 1.96 4.51 46.55 0.21 2.17 16 16 C 0.01 0.07 7.22 86.36 0.62 0.69 16 17 N -0.48 -5.40 4.29 -912.12 -3.92 -9.32 16 18 C 0.06 0.43 4.95 85.56 0.42 0.85 16 19 C -0.09 -0.93 5.46 -19.78 -0.11 -1.03 16 20 C 0.09 1.11 10.86 84.69 0.92 2.03 16 21 N -0.48 -7.71 10.36 -195.67 -2.03 -9.73 16 22 C 0.06 0.90 11.17 84.73 0.95 1.85 16 23 C 0.04 0.51 7.35 22.47 0.17 0.68 16 24 F -0.14 -2.21 17.28 44.97 0.78 -1.44 16 25 C -0.09 -1.11 9.85 22.51 0.22 -0.89 16 26 C 0.01 0.08 7.36 86.41 0.64 0.71 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.40 6.44 -2.39 -0.02 1.39 16 29 H 0.11 1.84 6.07 -2.39 -0.01 1.83 16 30 H 0.11 3.91 7.40 -2.39 -0.02 3.89 16 31 H 0.10 3.87 8.11 -2.39 -0.02 3.85 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.09 2.25 7.22 -2.39 -0.02 2.23 16 34 H 0.11 0.84 7.49 -2.39 -0.02 0.83 16 35 H 0.09 1.31 7.88 -2.39 -0.02 1.29 16 36 H 0.10 0.52 8.03 -2.39 -0.02 0.51 16 37 H 0.08 0.31 7.34 -2.39 -0.02 0.30 16 38 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.11 0.93 7.92 -2.39 -0.02 0.92 16 Total: -1.00 -77.69 370.86 1.76 -75.93 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.04 Total: 11.44 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 7.34 Total: -3.68 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -8.21 Total: -92.54 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.44 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -77.69 1.76 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716736365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.395 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds