Wall clock time and date at job start Sat Apr 11 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34779 * 119.99772 * 2 1 4 4 O 1.21552 * 119.99569 * 185.33932 * 3 2 1 5 5 C 1.47872 * 119.99871 * 5.34266 * 3 2 1 6 6 N 1.34543 * 126.04313 * 186.34670 * 5 3 2 7 7 C 1.30871 * 107.26755 * 179.97438 * 6 5 3 8 8 N 1.34582 * 107.62411 * 359.97438 * 7 6 5 9 9 H 0.97007 * 125.74528 * 179.97438 * 8 7 6 10 10 N 1.28844 * 108.50406 * 359.73019 * 8 7 6 11 11 C 1.46493 * 119.99865 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.78048 * 178.21654 * 11 2 1 13 13 C 1.55157 * 110.72567 * 54.97965 * 11 2 1 14 14 C 1.54911 * 101.58263 * 206.13514 * 13 11 2 15 15 N 1.47427 * 104.83240 * 37.00688 * 14 13 11 16 16 C 1.34779 * 125.64613 * 155.89708 * 15 14 13 17 17 O 1.21281 * 119.99676 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00068 * 359.96746 * 16 15 14 19 19 S 1.80998 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00211 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99691 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00302 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00276 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99565 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46898 * 90.00323 * 24 22 20 26 26 H 1.48498 * 109.47192 * 209.99539 * 24 22 20 27 27 H 1.48498 * 109.47693 * 330.00102 * 24 22 20 28 28 C 1.47018 * 108.70283 * 335.86964 * 15 14 13 29 29 H 1.08994 * 109.47091 * 275.28874 * 1 2 3 30 30 H 1.08998 * 109.46878 * 35.29231 * 1 2 3 31 31 H 1.08998 * 109.46621 * 155.28528 * 1 2 3 32 32 H 1.08004 * 126.18443 * 179.97438 * 7 6 5 33 33 H 1.09000 * 110.99699 * 324.20503 * 13 11 2 34 34 H 1.08998 * 111.00513 * 88.05767 * 13 11 2 35 35 H 1.09002 * 110.36730 * 155.84637 * 14 13 11 36 36 H 1.08998 * 110.36352 * 278.05456 * 14 13 11 37 37 H 1.08999 * 109.47595 * 300.00411 * 18 16 15 38 38 H 1.09011 * 109.47037 * 60.00384 * 18 16 15 39 39 H 0.96997 * 120.00415 * 180.02562 * 23 22 20 40 40 H 1.08994 * 109.88198 * 241.64145 * 28 15 14 41 41 H 1.09006 * 109.88221 * 120.47710 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1695 -0.0980 5 6 1.4043 2.4450 0.1192 6 7 1.9356 3.6765 0.0130 7 6 0.9619 4.5353 0.1782 8 7 -0.1684 3.8348 0.3855 9 1 -1.0488 4.2121 0.5389 10 7 0.1150 2.5787 0.3407 11 6 2.1975 -1.2687 -0.0006 12 1 3.2731 -1.0943 -0.0322 13 6 1.7508 -2.1601 -1.1894 14 6 2.0639 -3.5780 -0.6498 15 7 1.7324 -3.5173 0.7854 16 6 1.4054 -4.5698 1.5612 17 8 1.1509 -4.4020 2.7351 18 6 1.3559 -5.9551 0.9701 19 16 0.8896 -7.1427 2.2539 20 6 0.9091 -8.6329 1.3140 21 1 1.1620 -8.6060 0.2643 22 6 0.6005 -9.8415 1.9227 23 7 0.6156 -10.9548 1.2207 24 14 0.1639 -9.8881 3.7383 25 1 -1.3025 -9.7169 3.8993 26 1 0.5757 -11.1939 4.3132 27 1 0.8710 -8.7906 4.4459 28 6 1.8183 -2.1187 1.2304 29 1 -0.3633 0.0947 1.0232 30 1 -0.3633 0.8388 -0.5937 31 1 -0.3632 -0.9335 -0.4297 32 1 1.0497 5.6114 0.1528 33 1 0.6851 -2.0434 -1.3862 34 1 2.3374 -1.9434 -2.0821 35 1 1.4432 -4.3204 -1.1515 36 1 3.1196 -3.8117 -0.7875 37 1 0.6197 -5.9813 0.1667 38 1 2.3369 -6.2158 0.5725 39 1 0.3996 -11.7994 1.6459 40 1 2.5848 -2.0207 1.9991 41 1 0.8541 -1.7944 1.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720352379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:11 Heat of formation + Delta-G solvation = 47.008816 kcal Electronic energy + Delta-G solvation = -26248.038807 eV Core-core repulsion = 22292.380004 eV Total energy + Delta-G solvation = -3955.658803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.01890 -40.62308 -39.36817 -37.45454 -35.40543 -33.94289 -32.44511 -32.34422 -31.06197 -29.82578 -28.39095 -27.29188 -25.64165 -25.12166 -23.62445 -23.26880 -21.42825 -19.99756 -19.48441 -18.99309 -17.95892 -17.73481 -17.01078 -16.92569 -16.50626 -15.89239 -15.31509 -15.25994 -15.16154 -14.89968 -14.34343 -14.11816 -13.75595 -13.68892 -13.33466 -13.25429 -12.89541 -12.81288 -12.53692 -12.16240 -12.11579 -11.92500 -11.82089 -11.26919 -11.24297 -11.09467 -11.00427 -10.95881 -10.61452 -10.57063 -10.25844 -9.86256 -9.56893 -9.09704 -9.00454 -8.63276 -8.49944 -6.92417 -6.28918 -4.00839 0.81500 1.59714 1.97529 2.30219 2.71639 2.89083 2.92929 3.20271 3.33178 3.51003 3.56252 3.61540 3.92496 4.17081 4.20490 4.31562 4.33476 4.69181 4.71412 4.76671 4.91691 5.03563 5.10162 5.15539 5.21557 5.34146 5.43997 5.46447 5.55329 5.60472 5.68471 5.70787 5.74619 5.82040 6.00132 6.03247 6.16618 6.29294 6.80263 7.37101 7.52104 7.70636 7.94061 8.40666 8.41656 9.17247 10.80222 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.002024 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.721942 B =13830.952924 C =14181.006496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.591 5.591 3 C 0.615 3.385 4 O -0.507 6.507 5 C 0.154 3.846 6 N -0.462 5.462 7 C 0.199 3.801 8 N -0.401 5.401 9 H 0.452 0.548 10 N -0.270 5.270 11 C 0.132 3.868 12 H 0.122 0.878 13 C -0.143 4.143 14 C 0.101 3.899 15 N -0.624 5.624 16 C 0.548 3.452 17 O -0.516 6.516 18 C -0.117 4.117 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.101 3.899 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 32.282 -6.965 33.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.325 5.325 3 C 0.399 3.601 4 O -0.377 6.377 5 C -0.126 4.126 6 N -0.186 5.186 7 C -0.099 4.099 8 N -0.123 5.123 9 H 0.299 0.701 10 N -0.112 5.112 11 C 0.028 3.972 12 H 0.140 0.860 13 C -0.182 4.182 14 C -0.023 4.023 15 N -0.362 5.362 16 C 0.336 3.664 17 O -0.390 6.390 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.107 0.893 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.023 4.023 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.673 31.709 -5.234 32.249 hybrid contribution -0.712 0.157 -0.600 0.944 sum -3.385 31.866 -5.834 32.572 Atomic orbital electron populations 1.22063 0.78030 1.03507 1.03135 1.47455 1.07793 1.04554 1.72660 1.16335 0.85816 0.80766 0.77212 1.90846 1.12623 1.85953 1.48319 1.23733 0.87342 0.94682 1.06886 1.71327 1.30041 0.98511 1.18699 1.26779 0.81421 1.01284 1.00450 1.45278 1.12976 1.03879 1.50216 0.70086 1.74535 1.17110 0.99590 1.19922 1.22187 0.98572 0.81666 0.94762 0.86005 1.23215 1.03138 0.93856 0.98011 1.22327 1.01585 0.97338 0.81026 1.48380 1.70844 1.06392 1.10534 1.20011 0.75646 0.84930 0.85772 1.90714 1.47571 1.84925 1.15802 1.23253 1.05714 0.93788 1.04010 1.84807 1.90874 1.01092 1.14834 1.22303 1.54551 0.90958 0.99021 0.89350 1.24706 0.93601 0.94386 0.98604 1.69931 1.46710 0.98347 1.36645 0.86739 0.80443 0.79503 0.85196 1.19223 1.19936 1.15911 1.22121 1.02612 0.81271 0.96317 0.91721 0.89700 0.90377 0.75242 0.89669 0.88944 0.89563 0.90589 0.88515 0.88394 0.91938 0.90729 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 8.05 59.85 0.48 1.04 16 2 N -0.59 -5.69 2.88 -172.93 -0.50 -6.19 16 3 C 0.62 7.33 7.68 -12.32 -0.09 7.24 16 4 O -0.51 -7.66 16.48 5.32 0.09 -7.57 16 5 C 0.15 1.59 7.60 -156.36 -1.19 0.40 16 6 N -0.46 -4.54 11.41 -12.37 -0.14 -4.68 16 7 C 0.20 0.82 13.14 -90.48 -1.19 -0.37 16 8 N -0.40 -1.34 6.93 29.56 0.20 -1.13 16 9 H 0.45 -0.48 8.96 -190.21 -1.71 -2.18 16 10 N -0.27 -1.96 9.04 32.07 0.29 -1.67 16 11 C 0.13 1.29 3.35 -66.10 -0.22 1.07 16 12 H 0.12 1.30 7.01 -51.92 -0.36 0.93 16 13 C -0.14 -1.13 6.59 -24.58 -0.16 -1.29 16 14 C 0.10 0.99 6.69 -2.53 -0.02 0.97 16 15 N -0.62 -8.50 3.33 -170.52 -0.57 -9.07 16 16 C 0.55 10.04 7.87 -10.99 -0.09 9.95 16 17 O -0.52 -11.44 16.19 5.56 0.09 -11.35 16 18 C -0.12 -2.28 5.16 36.00 0.19 -2.09 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 24 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 28 C 0.10 1.22 6.50 -3.07 -0.02 1.20 16 29 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 31 H 0.08 0.52 6.13 -51.93 -0.32 0.20 16 32 H 0.23 -0.26 8.06 -52.48 -0.42 -0.68 16 33 H 0.08 0.61 6.14 -51.93 -0.32 0.30 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.80 7.48 -51.93 -0.39 0.42 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.73 7.85 -51.92 -0.41 1.32 16 38 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.90 7.06 -51.93 -0.37 0.54 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -40.13 357.23 -9.47 -49.60 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -6.29 Total: -5.25 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.10 Total: 6.16 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.06 Total: -48.44 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -40.13 -9.47 -49.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720352379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.609 kcal (2) G-P(sol) polarization free energy of solvation -40.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds