Wall clock time and date at job start Sat Apr 11 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34779 * 119.99772 * 2 1 4 4 O 1.21552 * 119.99569 * 185.33932 * 3 2 1 5 5 C 1.47872 * 119.99871 * 5.34266 * 3 2 1 6 6 N 1.34543 * 126.04313 * 186.34670 * 5 3 2 7 7 C 1.30871 * 107.26755 * 179.97438 * 6 5 3 8 8 N 1.34582 * 107.62411 * 359.97438 * 7 6 5 9 9 H 0.97007 * 125.74528 * 179.97438 * 8 7 6 10 10 N 1.28844 * 108.50406 * 359.73019 * 8 7 6 11 11 C 1.46493 * 119.99865 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.78048 * 178.21654 * 11 2 1 13 13 C 1.55157 * 110.72567 * 54.97965 * 11 2 1 14 14 C 1.54911 * 101.58263 * 206.13514 * 13 11 2 15 15 N 1.47427 * 104.83240 * 37.00688 * 14 13 11 16 16 C 1.34779 * 125.64613 * 155.89708 * 15 14 13 17 17 O 1.21281 * 119.99676 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00068 * 359.96746 * 16 15 14 19 19 S 1.80998 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00211 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99691 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00302 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00276 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99565 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46898 * 90.00323 * 24 22 20 26 26 H 1.48498 * 109.47192 * 209.99539 * 24 22 20 27 27 H 1.48498 * 109.47693 * 330.00102 * 24 22 20 28 28 C 1.47018 * 108.70283 * 335.86964 * 15 14 13 29 29 H 1.08994 * 109.47091 * 275.28874 * 1 2 3 30 30 H 1.08998 * 109.46878 * 35.29231 * 1 2 3 31 31 H 1.08998 * 109.46621 * 155.28528 * 1 2 3 32 32 H 1.08004 * 126.18443 * 179.97438 * 7 6 5 33 33 H 1.09000 * 110.99699 * 324.20503 * 13 11 2 34 34 H 1.08998 * 111.00513 * 88.05767 * 13 11 2 35 35 H 1.09002 * 110.36730 * 155.84637 * 14 13 11 36 36 H 1.08998 * 110.36352 * 278.05456 * 14 13 11 37 37 H 1.08999 * 109.47595 * 300.00411 * 18 16 15 38 38 H 1.09011 * 109.47037 * 60.00384 * 18 16 15 39 39 H 0.96997 * 120.00415 * 180.02562 * 23 22 20 40 40 H 1.08994 * 109.88198 * 241.64145 * 28 15 14 41 41 H 1.09006 * 109.88221 * 120.47710 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1695 -0.0980 5 6 1.4043 2.4450 0.1192 6 7 1.9356 3.6765 0.0130 7 6 0.9619 4.5353 0.1782 8 7 -0.1684 3.8348 0.3855 9 1 -1.0488 4.2121 0.5389 10 7 0.1150 2.5787 0.3407 11 6 2.1975 -1.2687 -0.0006 12 1 3.2731 -1.0943 -0.0322 13 6 1.7508 -2.1601 -1.1894 14 6 2.0639 -3.5780 -0.6498 15 7 1.7324 -3.5173 0.7854 16 6 1.4054 -4.5698 1.5612 17 8 1.1509 -4.4020 2.7351 18 6 1.3559 -5.9551 0.9701 19 16 0.8896 -7.1427 2.2539 20 6 0.9091 -8.6329 1.3140 21 1 1.1620 -8.6060 0.2643 22 6 0.6005 -9.8415 1.9227 23 7 0.6156 -10.9548 1.2207 24 14 0.1639 -9.8881 3.7383 25 1 -1.3025 -9.7169 3.8993 26 1 0.5757 -11.1939 4.3132 27 1 0.8710 -8.7906 4.4459 28 6 1.8183 -2.1187 1.2304 29 1 -0.3633 0.0947 1.0232 30 1 -0.3633 0.8388 -0.5937 31 1 -0.3632 -0.9335 -0.4297 32 1 1.0497 5.6114 0.1528 33 1 0.6851 -2.0434 -1.3862 34 1 2.3374 -1.9434 -2.0821 35 1 1.4432 -4.3204 -1.1515 36 1 3.1196 -3.8117 -0.7875 37 1 0.6197 -5.9813 0.1667 38 1 2.3369 -6.2158 0.5725 39 1 0.3996 -11.7994 1.6459 40 1 2.5848 -2.0207 1.9991 41 1 0.8541 -1.7944 1.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720352379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:11 Heat of formation + Delta-G solvation = 17.432254 kcal Electronic energy + Delta-G solvation = -26249.321343 eV Core-core repulsion = 22292.380004 eV Total energy + Delta-G solvation = -3956.941339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.49715 -41.57588 -40.51456 -38.59983 -36.33975 -34.66771 -34.45916 -33.12356 -31.99337 -30.95032 -29.45119 -28.03153 -27.83413 -25.93475 -24.40920 -23.85077 -22.17261 -20.88331 -20.61485 -19.63910 -19.49494 -18.68893 -18.22881 -17.56139 -17.47472 -17.14991 -16.92418 -16.52008 -16.06101 -15.76187 -15.67139 -15.37917 -14.94969 -14.87869 -14.65969 -14.09276 -14.05030 -13.81222 -13.70507 -13.37307 -13.31608 -13.01584 -12.85049 -12.72008 -12.66573 -12.63430 -11.88299 -11.81066 -11.77817 -11.57149 -11.40417 -11.16603 -11.07962 -10.74741 -10.53210 -9.90248 -9.80247 -9.00362 -8.50876 -6.21999 0.20655 0.93732 1.11928 1.31341 1.32107 1.48025 1.49118 1.56322 1.91329 2.08270 2.16634 2.25409 2.68207 2.87316 2.98494 3.31570 3.40262 3.50562 3.76766 3.89463 4.02233 4.05933 4.13248 4.18640 4.30292 4.41937 4.57979 4.60278 4.70631 4.75294 4.82245 4.90124 4.94682 5.07014 5.19186 5.26548 5.36217 5.71619 5.91169 6.07774 6.12391 6.27956 6.75090 6.94313 7.01077 7.05188 8.61276 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.002024 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.721942 B =13830.952924 C =14181.006496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.585 5.585 3 C 0.610 3.390 4 O -0.552 6.552 5 C 0.122 3.878 6 N -0.515 5.515 7 C 0.220 3.780 8 N -0.381 5.381 9 H 0.473 0.527 10 N -0.266 5.266 11 C 0.138 3.862 12 H 0.113 0.887 13 C -0.128 4.128 14 C 0.092 3.908 15 N -0.612 5.612 16 C 0.550 3.450 17 O -0.563 6.563 18 C -0.101 4.101 19 S -0.178 6.178 20 C -0.527 4.527 21 H 0.065 0.935 22 C 0.046 3.954 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.261 1.261 26 H -0.260 1.260 27 H -0.239 1.239 28 C 0.102 3.898 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.282 0.718 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.277 0.723 40 H 0.060 0.940 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 34.628 -7.643 35.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.317 5.317 3 C 0.395 3.605 4 O -0.427 6.427 5 C -0.157 4.157 6 N -0.241 5.241 7 C -0.077 4.077 8 N -0.106 5.106 9 H 0.325 0.675 10 N -0.110 5.110 11 C 0.033 3.967 12 H 0.130 0.870 13 C -0.167 4.167 14 C -0.030 4.030 15 N -0.348 5.348 16 C 0.338 3.662 17 O -0.442 6.442 18 C -0.252 4.252 19 S 0.049 5.951 20 C -0.674 4.674 21 H 0.083 0.917 22 C -0.159 4.159 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.186 1.186 26 H -0.184 1.184 27 H -0.163 1.163 28 C -0.022 4.022 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.297 0.703 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.965 34.086 -5.958 34.829 hybrid contribution -0.352 -0.355 -0.498 0.706 sum -4.318 33.730 -6.456 34.613 Atomic orbital electron populations 1.22175 0.76502 1.04535 1.03319 1.47493 1.08617 1.03922 1.71684 1.16681 0.85515 0.81839 0.76445 1.90803 1.14475 1.86750 1.50657 1.23424 0.88274 0.94358 1.09630 1.71256 1.32740 0.99152 1.20955 1.27637 0.80114 1.02565 0.97336 1.45308 1.14081 1.02717 1.48535 0.67543 1.74424 1.15736 1.01558 1.19296 1.22059 0.98267 0.81796 0.94535 0.86954 1.23198 1.04327 0.91563 0.97583 1.22685 1.02780 0.99051 0.78514 1.48273 1.68590 1.05972 1.11930 1.19705 0.75852 0.85311 0.85366 1.90695 1.50240 1.85536 1.17710 1.23200 1.06890 0.92869 1.02213 1.84762 1.91397 1.01369 1.17578 1.22432 1.53955 0.92686 0.98354 0.91706 1.25531 0.93620 0.94177 1.02581 1.70005 1.47780 0.99056 1.38459 0.85891 0.80343 0.79870 0.80418 1.18608 1.18381 1.16268 1.22169 1.02162 0.80632 0.97218 0.91933 0.88828 0.89148 0.70300 0.88341 0.86848 0.88351 0.89200 0.86557 0.86933 0.91371 0.92138 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 8.05 127.77 1.03 2.03 16 2 N -0.59 -10.82 2.88 -819.32 -2.36 -13.18 16 3 C 0.61 14.67 7.68 86.79 0.67 15.33 16 4 O -0.55 -17.35 16.48 -3.88 -0.06 -17.41 16 5 C 0.12 2.45 7.60 137.13 1.04 3.50 16 6 N -0.52 -9.67 11.41 -193.03 -2.20 -11.87 16 7 C 0.22 1.21 13.14 180.30 2.37 3.58 16 8 N -0.38 -1.47 6.93 -60.38 -0.42 -1.89 16 9 H 0.47 -2.62 8.96 -219.79 -1.97 -4.59 16 10 N -0.27 -3.42 9.04 -52.44 -0.47 -3.89 16 11 C 0.14 2.55 3.35 46.18 0.15 2.70 16 12 H 0.11 2.37 7.01 -2.38 -0.02 2.36 16 13 C -0.13 -1.68 6.59 31.99 0.21 -1.47 16 14 C 0.09 1.56 6.69 86.86 0.58 2.14 16 15 N -0.61 -15.87 3.33 -811.79 -2.70 -18.57 16 16 C 0.55 19.70 7.87 87.66 0.69 20.39 16 17 O -0.56 -25.08 16.19 -3.03 -0.05 -25.13 16 18 C -0.10 -3.83 5.16 71.24 0.37 -3.46 16 19 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 20 C -0.53 -30.50 10.04 67.95 0.68 -29.82 16 21 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 22 C 0.05 2.72 5.50 84.86 0.47 3.19 16 23 N -0.92 -55.45 13.97 21.65 0.30 -55.15 16 24 Si 0.91 45.05 27.74 68.60 1.90 46.96 16 25 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 28 C 0.10 2.40 6.50 86.73 0.56 2.97 16 29 H 0.06 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.09 1.10 5.93 -2.39 -0.01 1.08 16 31 H 0.09 0.97 6.13 -2.39 -0.01 0.95 16 32 H 0.28 -1.86 8.06 -2.91 -0.02 -1.88 16 33 H 0.10 1.08 6.14 -2.39 -0.01 1.06 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.51 7.48 -2.39 -0.02 1.50 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 3.96 7.85 -2.40 -0.02 3.94 16 38 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 39 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.74 7.06 -2.38 -0.02 1.73 16 Total: -1.00 -90.62 357.23 0.80 -89.82 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -0.91 Total: -0.72 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 8.82 Total: 21.09 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -7.85 Total: -104.55 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.11 Total: -42.54 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -90.62 0.80 -89.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720352379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.254 kcal (2) G-P(sol) polarization free energy of solvation -90.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds