Wall clock time and date at job start Sat Apr 11 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28512 * 124.44469 * 2 1 4 4 C 1.31139 * 109.06013 * 180.02562 * 3 2 1 5 5 C 1.40917 * 105.77106 * 0.02562 * 4 3 2 6 6 C 1.47806 * 127.23137 * 179.97438 * 5 4 3 7 7 O 1.21559 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99603 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99449 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.85552 * 313.97117 * 9 8 6 11 11 C 1.53783 * 113.61384 * 85.16977 * 9 8 6 12 12 C 1.53781 * 87.08074 * 89.11330 * 11 9 8 13 13 H 1.09004 * 113.61793 * 140.06535 * 12 11 9 14 14 N 1.46500 * 113.61684 * 270.88258 * 12 11 9 15 15 C 1.34776 * 120.00482 * 201.85938 * 14 12 11 16 16 O 1.21282 * 119.99893 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00243 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47085 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99990 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00035 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00124 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00228 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00176 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47476 * 89.99678 * 23 21 19 25 25 H 1.48499 * 109.46929 * 329.99461 * 23 21 19 26 26 H 1.48504 * 109.47062 * 210.00168 * 23 21 19 27 27 C 1.53776 * 87.08143 * 25.43272 * 12 11 9 28 28 N 1.28588 * 124.44095 * 180.31302 * 2 1 3 29 29 H 1.08998 * 109.47213 * 89.97413 * 1 2 3 30 30 H 1.08998 * 109.47115 * 209.97298 * 1 2 3 31 31 H 1.09000 * 109.46867 * 329.97497 * 1 2 3 32 32 H 1.07997 * 127.10852 * 180.02562 * 4 3 2 33 33 H 0.96994 * 120.00164 * 359.97438 * 8 6 5 34 34 H 1.09001 * 113.61426 * 334.56653 * 11 9 8 35 35 H 1.09003 * 113.69101 * 203.67166 * 11 9 8 36 36 H 0.97005 * 119.99516 * 21.85447 * 14 12 11 37 37 H 1.08996 * 109.47291 * 59.99843 * 17 15 14 38 38 H 1.09002 * 109.46899 * 299.99911 * 17 15 14 39 39 H 0.97005 * 119.99532 * 0.02562 * 22 21 19 40 40 H 1.09007 * 113.61535 * 89.11763 * 27 12 11 41 41 H 1.09008 * 113.61533 * 220.02156 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 -0.0006 5 6 3.4658 -0.6972 -0.0015 6 6 4.6486 -1.5836 -0.0029 7 8 5.7663 -1.1056 -0.0039 8 7 4.4879 -2.9218 -0.0043 9 6 5.6603 -3.8002 -0.0063 10 1 6.4167 -3.4952 -0.7295 11 6 6.2257 -4.0762 1.3970 12 6 5.2625 -5.2732 1.4638 13 1 5.6974 -6.1582 1.9284 14 7 3.9440 -4.9359 2.0060 15 6 3.1645 -5.9014 2.5321 16 8 3.5546 -7.0495 2.5564 17 6 1.8080 -5.5546 3.0893 18 16 1.0120 -7.0542 3.7166 19 6 -0.5092 -6.3756 4.2912 20 1 -0.7003 -5.3174 4.1915 21 6 -1.4620 -7.2012 4.8719 22 7 -1.2294 -8.4911 4.9930 23 14 -3.0750 -6.4819 5.4804 24 1 -4.0761 -6.5139 4.3840 25 1 -2.8590 -5.0778 5.9128 26 1 -3.5721 -7.2824 6.6282 27 6 5.3092 -5.2959 -0.0731 28 7 2.1923 -1.0605 -0.0058 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 4.3130 1.3694 -0.0003 33 1 3.5961 -3.3032 -0.0039 34 1 5.9996 -3.2930 2.1206 35 1 7.2776 -4.3617 1.3970 36 1 3.6319 -4.0177 1.9863 37 1 1.1925 -5.1190 2.3022 38 1 1.9215 -4.8362 3.9012 39 1 -0.3919 -8.8646 4.6767 40 1 6.1106 -5.9150 -0.4765 41 1 4.3433 -5.4974 -0.5363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737469864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:48 Heat of formation + Delta-G solvation = 61.772403 kcal Electronic energy + Delta-G solvation = -26438.917490 eV Core-core repulsion = 22483.898885 eV Total energy + Delta-G solvation = -3955.018606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.04097 -40.86622 -39.26500 -37.94159 -34.27912 -33.99984 -33.17602 -32.57201 -32.49275 -29.32400 -28.48187 -26.10189 -25.47683 -24.87786 -23.66329 -22.50130 -21.30087 -20.29243 -19.95576 -18.38098 -18.16467 -17.40391 -17.34985 -16.78036 -16.33099 -15.99688 -15.61616 -15.19147 -15.04414 -14.68533 -14.59298 -14.27467 -13.89306 -13.48915 -13.39134 -13.33179 -12.95750 -12.69673 -12.44846 -12.35213 -12.23143 -12.07284 -11.83599 -11.42681 -11.21820 -10.95297 -10.85410 -10.72637 -10.50430 -10.23528 -9.86599 -9.63567 -9.59535 -9.41004 -9.07435 -9.00514 -8.26875 -6.71463 -6.66405 -4.04507 0.90520 1.56869 1.75391 2.61330 2.84801 2.89246 2.90283 3.30096 3.34915 3.47044 3.51487 3.55656 4.10995 4.20367 4.25095 4.40421 4.56777 4.57901 4.59014 4.74264 4.85558 4.87630 4.96918 5.18260 5.27370 5.37091 5.37939 5.39421 5.51280 5.57322 5.65362 5.68726 5.71741 5.81068 5.95434 6.08965 6.12215 6.56624 7.02747 7.53955 7.67161 7.79358 7.87425 8.44041 8.45911 9.22721 10.77595 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009335 B = 0.003271 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.847919 B = 8558.630245 C =11266.146857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.138 5.138 3 N -0.289 5.289 4 C 0.036 3.964 5 C -0.054 4.054 6 C 0.615 3.385 7 O -0.522 6.522 8 N -0.702 5.702 9 C 0.121 3.879 10 H 0.099 0.901 11 C -0.154 4.154 12 C 0.122 3.878 13 H 0.106 0.894 14 N -0.722 5.722 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.131 4.131 18 S -0.113 6.113 19 C -0.608 4.608 20 H 0.065 0.935 21 C 0.036 3.964 22 N -0.884 5.884 23 Si 1.086 2.914 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.279 1.279 27 C -0.155 4.155 28 N -0.246 5.246 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.209 0.791 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.396 0.604 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.278 0.722 40 H 0.109 0.891 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.670 17.933 -13.014 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.041 5.041 3 N -0.129 5.129 4 C -0.147 4.147 5 C -0.217 4.217 6 C 0.398 3.602 7 O -0.395 6.395 8 N -0.355 5.355 9 C 0.016 3.984 10 H 0.117 0.883 11 C -0.193 4.193 12 C 0.016 3.984 13 H 0.124 0.876 14 N -0.376 5.376 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.283 4.283 18 S 0.113 5.887 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.194 4.194 28 N -0.095 5.095 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.225 0.775 33 H 0.245 0.755 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.231 0.769 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.334 15.931 -12.243 21.752 hybrid contribution 1.076 2.270 -0.786 2.632 sum 9.410 18.201 -13.029 24.281 Atomic orbital electron populations 1.22365 0.69191 1.06787 1.05602 1.48089 1.09444 0.99077 1.47450 1.74057 1.03811 1.15468 1.19577 1.24852 0.94356 0.93528 1.01992 1.23008 0.91299 0.94895 1.12449 1.16593 0.86062 0.81319 0.76224 1.90827 1.23725 1.75316 1.49649 1.45697 1.10277 1.05090 1.74403 1.21974 0.87988 0.90010 0.98395 0.88271 1.23743 1.00125 0.98185 0.97284 1.21852 0.83848 0.99092 0.93647 0.87602 1.45812 1.17374 1.11181 1.63243 1.20313 0.85984 0.85138 0.76641 1.90705 1.73393 1.19607 1.54970 1.23319 0.95454 1.05942 1.03539 1.84830 1.18466 1.07813 1.77609 1.23722 1.03205 0.98491 1.50197 0.91641 1.26045 1.02921 0.94450 0.94068 1.70773 1.27113 1.11888 1.42023 0.83295 0.73746 0.74784 0.76906 1.21045 1.21344 1.20467 1.23771 1.03728 0.94229 0.97693 1.74399 1.02883 1.15972 1.16258 0.88611 0.87070 0.87328 0.77472 0.75470 0.90359 0.87487 0.76902 0.88977 0.89062 0.90927 0.87310 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.55 59.85 0.69 1.17 16 2 N -0.14 -1.26 4.34 -16.63 -0.07 -1.34 16 3 N -0.29 -2.89 12.01 30.90 0.37 -2.51 16 4 C 0.04 0.35 12.04 -16.84 -0.20 0.15 16 5 C -0.05 -0.57 7.21 -82.68 -0.60 -1.17 16 6 C 0.61 6.71 7.83 -12.34 -0.10 6.61 16 7 O -0.52 -6.83 16.89 5.31 0.09 -6.74 16 8 N -0.70 -6.54 4.33 -53.97 -0.23 -6.78 16 9 C 0.12 1.04 4.00 -67.12 -0.27 0.77 16 10 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 11 C -0.15 -1.35 7.62 -25.92 -0.20 -1.55 16 12 C 0.12 1.32 4.28 -67.12 -0.29 1.04 16 13 H 0.11 1.31 7.54 -51.93 -0.39 0.92 16 14 N -0.72 -9.28 4.96 -53.02 -0.26 -9.54 16 15 C 0.53 9.55 7.85 -10.99 -0.09 9.46 16 16 O -0.51 -11.14 15.50 5.56 0.09 -11.05 16 17 C -0.13 -2.59 6.16 36.00 0.22 -2.37 16 18 S -0.11 -3.00 19.60 -107.50 -2.11 -5.10 16 19 C -0.61 -17.22 9.50 30.94 0.29 -16.92 16 20 H 0.07 1.77 7.80 -52.49 -0.41 1.36 16 21 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 22 N -0.88 -27.17 13.67 55.49 0.76 -26.41 16 23 Si 1.09 24.50 29.92 -169.99 -5.09 19.41 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.16 -1.35 7.57 -25.92 -0.20 -1.54 16 28 N -0.25 -2.55 11.84 33.42 0.40 -2.15 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.41 3.70 7.59 -40.82 -0.31 3.39 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.42 7.19 -40.82 -0.29 4.13 16 37 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.28 8.74 7.13 -40.82 -0.29 8.45 16 40 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.08 0.78 8.13 -51.92 -0.42 0.35 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -37.41 372.10 -6.41 -43.82 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.14 Total: 6.21 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.82 Total: -3.42 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.96 Total: -48.73 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.41 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.11 Total: -5.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.41 -6.41 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737469864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.590 kcal (2) G-P(sol) polarization free energy of solvation -37.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds